Wall clock time and date at job start Tue Mar 31 2020 17:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29822 * 118.55834 * 2 1 4 4 C 1.50141 * 123.28945 * 180.37452 * 3 2 1 5 5 N 1.46848 * 110.26950 * 342.95231 * 4 3 2 6 6 C 1.46906 * 110.99897 * 287.53448 * 5 4 3 7 7 C 1.53001 * 109.47194 * 293.95426 * 6 5 4 8 8 N 1.46498 * 109.47077 * 180.02562 * 7 6 5 9 9 S 1.65595 * 120.00063 * 165.00440 * 8 7 6 10 10 O 1.42095 * 106.40282 * 178.53695 * 9 8 7 11 11 O 1.42100 * 106.40181 * 311.45901 * 9 8 7 12 12 N 1.65601 * 107.21794 * 64.99696 * 9 8 7 13 13 C 1.46492 * 120.00121 * 269.99740 * 12 9 8 14 14 C 1.46507 * 119.99968 * 90.00300 * 12 9 8 15 15 H 1.09000 * 109.46948 * 359.97438 * 14 12 9 16 16 C 1.52999 * 109.47033 * 240.00031 * 14 12 9 17 17 C 1.50698 * 109.46902 * 119.99714 * 14 12 9 18 18 H 1.07996 * 120.00446 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99667 * 179.97438 * 17 14 12 20 20 N 1.31514 * 119.99590 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99985 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47136 * 89.99905 * 21 19 17 23 23 H 1.48496 * 109.46946 * 209.99886 * 21 19 17 24 24 H 1.48497 * 109.47220 * 329.99874 * 21 19 17 25 25 C 1.47229 * 110.21944 * 50.91442 * 5 4 3 26 26 C 1.50306 * 118.55068 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46729 * 270.02122 * 1 2 3 28 28 H 1.08995 * 109.47157 * 30.01379 * 1 2 3 29 29 H 1.08994 * 109.47275 * 150.02224 * 1 2 3 30 30 H 1.07998 * 118.35227 * 0.40083 * 3 2 1 31 31 H 1.08997 * 109.33411 * 103.19329 * 4 3 2 32 32 H 1.09001 * 109.33888 * 222.87234 * 4 3 2 33 33 H 1.08996 * 109.47109 * 53.95646 * 6 5 4 34 34 H 1.09007 * 109.46805 * 173.96012 * 6 5 4 35 35 H 1.09004 * 109.47446 * 300.00351 * 7 6 5 36 36 H 1.08997 * 109.46752 * 60.00413 * 7 6 5 37 37 H 0.97002 * 119.99998 * 345.00048 * 8 7 6 38 38 H 1.09001 * 109.47088 * 90.00296 * 13 12 9 39 39 H 1.09004 * 109.47810 * 210.00159 * 13 12 9 40 40 H 1.08998 * 109.47724 * 330.00712 * 13 12 9 41 41 H 1.09008 * 109.46681 * 299.99644 * 16 14 12 42 42 H 1.08993 * 109.47142 * 59.99446 * 16 14 12 43 43 H 1.09002 * 109.46927 * 180.02562 * 16 14 12 44 44 H 0.97008 * 119.99309 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.63075 * 171.51137 * 25 5 4 46 46 H 1.09001 * 109.63801 * 50.89967 * 25 5 4 47 47 H 1.09004 * 109.43300 * 283.57594 * 26 2 1 48 48 H 1.08997 * 109.43380 * 43.42211 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0082 5 7 4.2418 -0.0077 0.3881 6 6 4.0641 -0.2540 1.8255 7 6 4.8439 0.7936 2.6226 8 7 4.6672 0.5477 4.0559 9 16 5.6733 1.2759 5.1512 10 8 5.2276 0.8693 6.4377 11 8 6.9980 1.0611 4.6839 12 7 5.4028 2.9069 5.0565 13 6 6.1818 3.7257 4.1244 14 6 4.3844 3.5310 5.9049 15 1 3.9130 2.7697 6.5265 16 6 3.3254 4.1972 5.0243 17 6 5.0314 4.5690 6.7852 18 1 6.0946 4.7465 6.7190 19 6 4.2656 5.2930 7.6744 20 7 2.9708 5.0772 7.7546 21 14 5.0674 6.5803 8.7651 22 1 5.0570 7.8930 8.0711 23 1 4.3132 6.6882 10.0397 24 1 6.4692 6.1828 9.0515 25 6 3.6860 -1.1137 -0.4090 26 6 2.2254 -1.3203 0.0006 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5140 29 1 -0.3633 -0.8901 -0.5135 30 1 1.5380 2.0451 0.0066 31 1 3.9584 1.5309 -1.0107 32 1 3.9255 2.0429 0.6923 33 1 3.0057 -0.1883 2.0772 34 1 4.4354 -1.2487 2.0722 35 1 5.9025 0.7280 2.3708 36 1 4.4727 1.7883 2.3758 37 1 3.9608 -0.0417 4.3634 38 1 5.6693 3.7693 3.1634 39 1 6.2867 4.7335 4.5262 40 1 7.1689 3.2836 3.9898 41 1 3.7966 4.9585 4.4025 42 1 2.8576 3.4464 4.3876 43 1 2.5680 4.6620 5.6556 44 1 2.4321 5.5863 8.3804 45 1 4.2527 -2.0247 -0.2166 46 1 3.7376 -0.8636 -1.4687 47 1 2.1868 -1.7537 1.0000 48 1 1.7429 -1.9960 -0.7056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337795050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:14 Heat of formation + Delta-G solvation = -79.153141 kcal Electronic energy + Delta-G solvation = -27988.467065 eV Core-core repulsion = 24204.480996 eV Total energy + Delta-G solvation = -3783.986069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.172 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.76052 -38.33308 -37.88540 -36.89010 -36.73213 -34.69329 -34.50963 -31.87959 -30.91302 -30.13010 -27.69142 -27.23381 -26.97081 -24.97151 -24.06120 -22.64483 -22.17681 -20.31121 -18.96153 -18.59905 -18.34337 -17.87686 -17.51082 -16.95273 -16.71054 -16.24859 -15.97378 -15.61859 -15.23040 -15.11036 -15.05313 -14.73648 -14.43243 -14.30060 -13.78629 -13.56315 -13.51037 -13.45158 -13.33586 -13.16459 -13.11256 -13.00349 -12.85971 -12.74067 -12.69241 -12.63549 -12.59455 -12.31173 -12.13484 -12.12178 -12.01619 -11.87430 -11.54038 -11.16142 -10.50926 -10.43630 -9.66532 -9.65082 -9.27410 -8.11347 -6.24574 -0.31318 1.25040 1.42633 1.44881 1.54300 2.02168 2.43683 2.61358 3.03474 3.17176 3.47048 3.78572 3.91490 3.94393 4.10762 4.13768 4.18254 4.23515 4.44803 4.54970 4.60580 4.66522 4.68253 4.76677 4.77752 4.80556 4.82065 4.91433 4.95846 5.00500 5.02058 5.04095 5.06254 5.11155 5.15548 5.18466 5.27795 5.61738 5.64043 5.69536 5.87647 5.96210 6.03751 6.07699 6.14684 6.21148 6.30793 6.83033 7.44185 8.92838 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.003362 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.441365 B = 8325.660999 C = 9191.685294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.132 4.132 3 C -0.203 4.203 4 C 0.073 3.927 5 N -0.532 5.532 6 C 0.052 3.948 7 C 0.121 3.879 8 N -1.118 6.118 9 S 2.799 3.201 10 O -1.017 7.017 11 O -1.008 7.008 12 N -0.996 5.996 13 C 0.091 3.909 14 C 0.274 3.726 15 H 0.024 0.976 16 C -0.131 4.131 17 C -0.539 4.539 18 H 0.058 0.942 19 C 0.018 3.982 20 N -0.914 5.914 21 Si 0.956 3.044 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.275 1.275 25 C 0.053 3.947 26 C -0.120 4.120 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.420 0.580 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.032 0.968 43 H 0.065 0.935 44 H 0.264 0.736 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -10.357 -19.758 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.133 4.133 3 C -0.222 4.222 4 C -0.055 4.055 5 N -0.254 5.254 6 C -0.078 4.078 7 C -0.005 4.005 8 N -0.881 5.881 9 S 2.808 3.192 10 O -1.002 7.002 11 O -0.991 6.991 12 N -0.838 5.838 13 C -0.054 4.054 14 C 0.169 3.831 15 H 0.042 0.958 16 C -0.191 4.191 17 C -0.579 4.579 18 H 0.076 0.924 19 C -0.182 4.182 20 N -0.553 5.553 21 Si 0.781 3.219 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.074 4.074 26 C -0.159 4.159 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.255 0.745 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.912 -10.588 -19.263 22.064 hybrid contribution -1.396 0.749 1.071 1.913 sum -3.309 -9.839 -18.192 20.945 Atomic orbital electron populations 1.20920 0.91801 1.02885 1.02015 1.21186 0.96496 0.95111 1.00470 1.22813 0.97998 0.98066 1.03330 1.21243 0.89262 0.92323 1.02676 1.62652 1.56111 1.03345 1.03314 1.22191 0.98651 0.99121 0.87801 1.21311 1.01717 0.99569 0.77916 1.55703 1.51445 1.63040 1.17932 1.01111 0.73132 0.72836 0.72157 1.93552 1.83044 1.82798 1.40764 1.93505 1.37465 1.85584 1.82596 1.57516 1.50115 1.24495 1.51629 1.21499 0.94681 0.97275 0.91995 1.18388 0.84975 0.92400 0.87318 0.95816 1.21878 0.99591 0.99249 0.98360 1.21668 0.94815 1.20483 1.20885 0.92395 1.25634 0.95406 0.99059 0.98106 1.69982 1.05806 1.42093 1.37395 0.85595 0.78389 0.79570 0.78312 1.19456 1.21006 1.19954 1.22350 0.92345 0.94473 0.98272 1.21097 0.96885 0.95039 1.02847 0.92040 0.91795 0.90938 0.87593 0.88434 0.89735 0.93461 0.89365 0.90147 0.91372 0.74505 0.91412 0.90950 0.90969 0.93942 0.94873 0.91654 0.92676 0.89131 0.89605 0.90825 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.91 71.24 0.71 -0.99 16 2 C -0.13 -2.13 5.25 -15.40 -0.08 -2.21 16 3 C -0.20 -3.54 8.95 26.69 0.24 -3.30 16 4 C 0.07 1.23 5.84 85.39 0.50 1.73 16 5 N -0.53 -9.27 5.03 -900.91 -4.53 -13.81 16 6 C 0.05 1.00 4.20 86.30 0.36 1.36 16 7 C 0.12 2.87 6.20 86.38 0.54 3.41 16 8 N -1.12 -31.76 6.05 -187.49 -1.14 -32.89 16 9 S 2.80 108.92 6.14 -56.49 -0.35 108.57 16 10 O -1.02 -48.39 16.70 -128.00 -2.14 -50.52 16 11 O -1.01 -41.21 16.21 -128.00 -2.07 -43.28 16 12 N -1.00 -40.62 3.12 -520.45 -1.62 -42.24 16 13 C 0.09 3.09 9.65 127.77 1.23 4.32 16 14 C 0.27 13.43 2.62 44.24 0.12 13.55 16 15 H 0.02 1.33 6.91 -2.39 -0.02 1.32 16 16 C -0.13 -5.85 8.97 71.98 0.65 -5.20 16 17 C -0.54 -29.18 7.99 25.60 0.20 -28.98 16 18 H 0.06 3.11 7.33 -2.91 -0.02 3.09 16 19 C 0.02 0.97 5.30 84.66 0.45 1.42 16 20 N -0.91 -51.29 11.32 21.45 0.24 -51.05 16 21 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 C 0.05 0.72 6.03 86.27 0.52 1.24 16 26 C -0.12 -1.61 5.23 29.76 0.16 -1.45 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.88 7.94 -2.39 -0.02 0.86 16 29 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 30 H 0.11 1.86 7.87 -2.91 -0.02 1.84 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.53 6.00 -2.39 -0.01 1.51 16 33 H 0.05 0.93 6.00 -2.39 -0.01 0.92 16 34 H 0.09 1.56 8.09 -2.38 -0.02 1.54 16 35 H 0.08 2.00 7.75 -2.38 -0.02 1.98 16 36 H 0.07 1.57 6.32 -2.39 -0.02 1.56 16 37 H 0.42 10.45 8.65 -96.75 -0.84 9.61 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.61 7.02 -2.39 -0.02 2.60 16 40 H 0.07 2.31 7.02 -2.39 -0.02 2.29 16 41 H 0.04 1.76 7.67 -2.38 -0.02 1.74 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 44 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 45 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 47 H 0.07 1.04 7.13 -2.39 -0.02 1.02 16 48 H 0.09 0.95 8.13 -2.39 -0.02 0.93 16 Total: -1.00 -68.01 382.68 -3.88 -71.89 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.11 Total: 23.12 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 5.59 Total: -15.11 kcal Atomic # 7 Polarization: -132.95 SS G_CDS: -7.05 Total: -140.00 kcal Atomic # 8 Polarization: -89.59 SS G_CDS: -4.21 Total: -93.81 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 108.92 SS G_CDS: -0.35 Total: 108.57 kcal Total: -68.01 -3.88 -71.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337795050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.259 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds