Wall clock time and date at job start Tue Mar 31 2020 17:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.29825 * 118.55240 * 2 1 4 4 C 1.50140 * 123.28306 * 180.39278 * 3 2 1 5 5 N 1.46847 * 110.27917 * 342.92814 * 4 3 2 6 6 C 1.46893 * 111.00065 * 174.31392 * 5 4 3 7 7 C 1.53000 * 109.47322 * 66.04542 * 6 5 4 8 8 N 1.46501 * 109.47266 * 179.97438 * 7 6 5 9 9 S 1.65598 * 120.00034 * 164.99831 * 8 7 6 10 10 O 1.42100 * 106.40183 * 311.46236 * 9 8 7 11 11 O 1.42101 * 106.40217 * 178.54484 * 9 8 7 12 12 N 1.65597 * 107.21541 * 65.00515 * 9 8 7 13 13 C 1.46503 * 119.99956 * 269.99520 * 12 9 8 14 14 C 1.46497 * 120.00227 * 89.99985 * 12 9 8 15 15 H 1.09003 * 109.46733 * 0.02562 * 14 12 9 16 16 C 1.53000 * 109.47145 * 119.99787 * 14 12 9 17 17 C 1.50694 * 109.47115 * 239.99861 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.47243 * 110.20158 * 50.92320 * 5 4 3 26 26 C 1.50306 * 118.55497 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46762 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46752 * 120.00268 * 1 2 3 29 29 H 1.08994 * 109.47051 * 240.00055 * 1 2 3 30 30 H 1.08001 * 118.36041 * 0.36668 * 3 2 1 31 31 H 1.08994 * 109.33745 * 222.67887 * 4 3 2 32 32 H 1.09007 * 109.20259 * 103.08709 * 4 3 2 33 33 H 1.08996 * 109.47305 * 306.03711 * 6 5 4 34 34 H 1.09005 * 109.46933 * 186.04559 * 6 5 4 35 35 H 1.09001 * 109.46843 * 59.99785 * 7 6 5 36 36 H 1.08992 * 109.46988 * 299.99673 * 7 6 5 37 37 H 0.96998 * 119.99681 * 345.00413 * 8 7 6 38 38 H 1.08994 * 109.47665 * 270.00896 * 13 12 9 39 39 H 1.09008 * 109.46786 * 30.00504 * 13 12 9 40 40 H 1.08997 * 109.47360 * 149.99945 * 13 12 9 41 41 H 1.09000 * 109.47156 * 59.99824 * 16 14 12 42 42 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 43 43 H 1.09007 * 109.47356 * 300.00099 * 16 14 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.63792 * 50.89349 * 25 5 4 46 46 H 1.09003 * 109.63437 * 171.50932 * 25 5 4 47 47 H 1.09005 * 109.42638 * 283.58098 * 26 2 1 48 48 H 1.08996 * 109.43104 * 43.42565 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1404 0.0000 4 6 3.6238 1.2642 -0.0086 5 7 4.2421 -0.0074 0.3879 6 6 5.7037 0.0540 0.2555 7 6 6.2651 1.0609 1.2615 8 7 7.7229 1.1217 1.1298 9 16 8.5645 2.3733 1.8136 10 8 7.8959 3.5657 1.4259 11 8 9.9378 2.1290 1.5423 12 7 8.3825 2.2476 3.4547 13 6 7.2655 2.9213 4.1216 14 6 9.3385 1.4627 4.2398 15 1 10.0934 1.0406 3.5764 16 6 10.0152 2.3672 5.2717 17 6 8.6119 0.3486 4.9481 18 1 7.5447 0.2365 4.8261 19 6 9.3094 -0.5272 5.7528 20 7 10.6090 -0.3905 5.9018 21 14 8.4086 -1.9078 6.6313 22 1 7.9556 -1.4341 7.9638 23 1 7.2312 -2.3216 5.8264 24 1 9.3230 -3.0654 6.8021 25 6 3.6860 -1.1135 -0.4092 26 6 2.2255 -1.3202 0.0006 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 -0.3633 -0.5138 0.8899 30 1 1.5380 2.0452 0.0061 31 1 3.9254 2.0452 0.6893 32 1 3.9559 1.5294 -1.0124 33 1 5.9642 0.3668 -0.7556 34 1 6.1280 -0.9307 0.4518 35 1 6.0046 0.7480 2.2726 36 1 5.8409 2.0455 1.0652 37 1 8.1951 0.4289 0.6421 38 1 7.5702 3.9257 4.4156 39 1 6.4187 2.9840 3.4381 40 1 6.9764 2.3555 5.0072 41 1 9.2605 2.7897 5.9350 42 1 10.7268 1.7834 5.8555 43 1 10.5408 3.1731 4.7594 44 1 11.0996 -1.0064 6.4682 45 1 3.7372 -0.8633 -1.4688 46 1 4.2527 -2.0245 -0.2170 47 1 2.1868 -1.7536 1.0000 48 1 1.7431 -1.9959 -0.7057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337795052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:18 Heat of formation + Delta-G solvation = -59.220139 kcal Electronic energy + Delta-G solvation = -27646.736818 eV Core-core repulsion = 23863.615109 eV Total energy + Delta-G solvation = -3783.121709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.45435 -36.70567 -36.17443 -35.97153 -35.23750 -33.96319 -32.58222 -31.10341 -29.44950 -29.06305 -26.64660 -25.46893 -25.16133 -24.18856 -22.79588 -21.58343 -20.74500 -18.85872 -17.80866 -17.23179 -16.76328 -16.45839 -16.13014 -15.71247 -15.47037 -15.06763 -14.81302 -14.46943 -14.13803 -13.79890 -13.54504 -13.46806 -13.32231 -13.12000 -12.73503 -12.69592 -12.41607 -12.20384 -11.98203 -11.91608 -11.75795 -11.55282 -11.51579 -11.39895 -11.34702 -11.20179 -10.97269 -10.83607 -10.79492 -10.64641 -10.41041 -10.20530 -10.05262 -9.34504 -9.10684 -8.97895 -8.49557 -8.47091 -7.94614 -6.08116 -4.16375 1.27213 2.03839 3.25808 3.33037 3.34497 3.40453 3.82492 4.18716 4.37051 4.48190 4.55938 4.79277 4.95566 5.03433 5.07446 5.11035 5.20682 5.22604 5.32796 5.34745 5.39177 5.42299 5.46298 5.57459 5.63658 5.66038 5.72694 5.82075 5.90296 6.03157 6.12775 6.19909 6.30930 6.38208 6.68892 6.73793 6.84022 6.89394 6.89848 6.96484 7.13216 7.25553 7.54563 7.64799 7.79921 8.06696 8.27594 8.86916 9.49931 10.96915 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011583 B = 0.003671 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.858628 B = 7626.249295 C = 9095.708017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.122 4.122 3 C -0.160 4.160 4 C 0.078 3.922 5 N -0.529 5.529 6 C 0.050 3.950 7 C 0.125 3.875 8 N -1.129 6.129 9 S 2.785 3.215 10 O -1.000 7.000 11 O -0.982 6.982 12 N -0.989 5.989 13 C 0.106 3.894 14 C 0.268 3.732 15 H 0.058 0.942 16 C -0.145 4.145 17 C -0.524 4.524 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.896 3.104 22 H -0.281 1.281 23 H -0.274 1.274 24 H -0.287 1.287 25 C 0.053 3.947 26 C -0.078 4.078 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.412 0.588 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.092 0.908 43 H 0.012 0.988 44 H 0.263 0.737 45 H 0.037 0.963 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.996 -0.207 -11.558 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.122 4.122 3 C -0.179 4.179 4 C -0.050 4.050 5 N -0.254 5.254 6 C -0.080 4.080 7 C -0.002 4.002 8 N -0.888 5.888 9 S 2.794 3.206 10 O -0.983 6.983 11 O -0.966 6.966 12 N -0.832 5.832 13 C -0.040 4.040 14 C 0.165 3.835 15 H 0.076 0.924 16 C -0.204 4.204 17 C -0.564 4.564 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.724 3.276 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.213 1.213 25 C -0.075 4.075 26 C -0.116 4.116 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.244 0.756 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.111 0.889 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.562 0.452 -11.339 19.261 hybrid contribution -0.320 -1.237 -0.212 1.295 sum -15.883 -0.785 -11.552 19.655 Atomic orbital electron populations 1.20907 0.92462 1.02246 1.01917 1.20969 0.95497 0.95095 1.00669 1.22081 0.95251 0.97557 1.02970 1.21072 0.92088 0.92335 0.99475 1.62311 1.04250 1.03796 1.55087 1.22300 0.87152 1.00701 0.97799 1.21112 0.79235 0.99468 1.00371 1.55990 1.15615 1.45661 1.71505 1.01708 0.72746 0.73078 0.73091 1.93533 1.76824 1.45382 1.82571 1.93593 1.32337 1.85826 1.84854 1.57681 1.37632 1.63771 1.24106 1.21203 0.87506 0.96438 0.98893 1.18720 0.86430 0.88143 0.90183 0.92392 1.22056 1.00541 0.97962 0.99878 1.21387 0.94871 1.11728 1.28392 0.91835 1.24927 0.94850 0.97677 0.96416 1.69886 1.06500 1.37498 1.38708 0.86534 0.79513 0.81581 0.79962 1.20685 1.19867 1.21258 1.22188 0.95596 0.94717 0.95011 1.20461 0.93692 0.94922 1.02489 0.92172 0.91942 0.91651 0.87185 0.89126 0.93643 0.94119 0.89642 0.90434 0.91056 0.75580 0.93902 0.93271 0.90170 0.94876 0.88932 0.96912 0.92680 0.94516 0.90146 0.89975 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.02 36.01 0.36 -0.49 16 2 C -0.12 -1.12 5.89 -100.92 -0.59 -1.72 16 3 C -0.16 -1.56 9.53 -35.97 -0.34 -1.91 16 4 C 0.08 0.82 5.26 -5.28 -0.03 0.79 16 5 N -0.53 -5.95 4.72 -236.11 -1.11 -7.07 16 6 C 0.05 0.57 5.09 -3.83 -0.02 0.55 16 7 C 0.13 1.72 6.17 -4.04 -0.02 1.70 16 8 N -1.13 -17.56 6.05 -10.61 -0.06 -17.63 16 9 S 2.79 54.21 6.09 -107.50 -0.66 53.55 16 10 O -1.00 -20.33 16.68 -57.17 -0.95 -21.28 16 11 O -0.98 -22.31 16.70 -57.17 -0.95 -23.27 16 12 N -0.99 -20.39 3.12 -115.85 -0.36 -20.76 16 13 C 0.11 1.89 9.28 59.85 0.56 2.44 16 14 C 0.27 6.53 2.62 -69.09 -0.18 6.35 16 15 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 16 C -0.14 -3.46 8.97 37.16 0.33 -3.13 16 17 C -0.52 -13.37 7.99 -34.44 -0.28 -13.65 16 18 H 0.06 1.58 7.33 -52.49 -0.38 1.19 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.89 -24.38 11.32 55.43 0.63 -23.76 16 21 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.05 0.50 5.59 -3.59 -0.02 0.48 16 26 C -0.08 -0.68 6.05 -28.03 -0.17 -0.85 16 27 H 0.06 0.40 7.62 -51.93 -0.40 0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 0.94 7.63 -52.49 -0.40 0.53 16 31 H 0.09 0.98 6.73 -51.93 -0.35 0.63 16 32 H 0.05 0.47 8.06 -51.93 -0.42 0.05 16 33 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.09 0.95 7.94 -51.93 -0.41 0.54 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.96 6.28 -51.93 -0.33 0.64 16 37 H 0.41 5.68 8.65 -34.47 -0.30 5.38 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.75 7.79 -51.92 -0.40 0.35 16 40 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 41 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 42 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 46 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -31.22 388.38 -11.32 -42.54 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.17 Total: 4.28 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.50 Total: -7.84 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -0.91 Total: -69.21 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.91 Total: -44.54 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.66 Total: 53.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.22 -11.32 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337795052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.682 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds