Wall clock time and date at job start Tue Mar 31 2020 17:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.29825 * 118.55240 * 2 1 4 4 C 1.50140 * 123.28306 * 180.39278 * 3 2 1 5 5 N 1.46847 * 110.27917 * 342.92814 * 4 3 2 6 6 C 1.46893 * 111.00065 * 174.31392 * 5 4 3 7 7 C 1.53000 * 109.47322 * 66.04542 * 6 5 4 8 8 N 1.46501 * 109.47266 * 179.97438 * 7 6 5 9 9 S 1.65598 * 120.00034 * 164.99831 * 8 7 6 10 10 O 1.42100 * 106.40183 * 311.46236 * 9 8 7 11 11 O 1.42101 * 106.40217 * 178.54484 * 9 8 7 12 12 N 1.65597 * 107.21541 * 65.00515 * 9 8 7 13 13 C 1.46503 * 119.99956 * 269.99520 * 12 9 8 14 14 C 1.46497 * 120.00227 * 89.99985 * 12 9 8 15 15 H 1.09003 * 109.46733 * 0.02562 * 14 12 9 16 16 C 1.53000 * 109.47145 * 119.99787 * 14 12 9 17 17 C 1.50694 * 109.47115 * 239.99861 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.47243 * 110.20158 * 50.92320 * 5 4 3 26 26 C 1.50306 * 118.55497 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46762 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46752 * 120.00268 * 1 2 3 29 29 H 1.08994 * 109.47051 * 240.00055 * 1 2 3 30 30 H 1.08001 * 118.36041 * 0.36668 * 3 2 1 31 31 H 1.08994 * 109.33745 * 222.67887 * 4 3 2 32 32 H 1.09007 * 109.20259 * 103.08709 * 4 3 2 33 33 H 1.08996 * 109.47305 * 306.03711 * 6 5 4 34 34 H 1.09005 * 109.46933 * 186.04559 * 6 5 4 35 35 H 1.09001 * 109.46843 * 59.99785 * 7 6 5 36 36 H 1.08992 * 109.46988 * 299.99673 * 7 6 5 37 37 H 0.96998 * 119.99681 * 345.00413 * 8 7 6 38 38 H 1.08994 * 109.47665 * 270.00896 * 13 12 9 39 39 H 1.09008 * 109.46786 * 30.00504 * 13 12 9 40 40 H 1.08997 * 109.47360 * 149.99945 * 13 12 9 41 41 H 1.09000 * 109.47156 * 59.99824 * 16 14 12 42 42 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 43 43 H 1.09007 * 109.47356 * 300.00099 * 16 14 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.63792 * 50.89349 * 25 5 4 46 46 H 1.09003 * 109.63437 * 171.50932 * 25 5 4 47 47 H 1.09005 * 109.42638 * 283.58098 * 26 2 1 48 48 H 1.08996 * 109.43104 * 43.42565 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1404 0.0000 4 6 3.6238 1.2642 -0.0086 5 7 4.2421 -0.0074 0.3879 6 6 5.7037 0.0540 0.2555 7 6 6.2651 1.0609 1.2615 8 7 7.7229 1.1217 1.1298 9 16 8.5645 2.3733 1.8136 10 8 7.8959 3.5657 1.4259 11 8 9.9378 2.1290 1.5423 12 7 8.3825 2.2476 3.4547 13 6 7.2655 2.9213 4.1216 14 6 9.3385 1.4627 4.2398 15 1 10.0934 1.0406 3.5764 16 6 10.0152 2.3672 5.2717 17 6 8.6119 0.3486 4.9481 18 1 7.5447 0.2365 4.8261 19 6 9.3094 -0.5272 5.7528 20 7 10.6090 -0.3905 5.9018 21 14 8.4086 -1.9078 6.6313 22 1 7.9556 -1.4341 7.9638 23 1 7.2312 -2.3216 5.8264 24 1 9.3230 -3.0654 6.8021 25 6 3.6860 -1.1135 -0.4092 26 6 2.2255 -1.3202 0.0006 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 -0.3633 -0.5138 0.8899 30 1 1.5380 2.0452 0.0061 31 1 3.9254 2.0452 0.6893 32 1 3.9559 1.5294 -1.0124 33 1 5.9642 0.3668 -0.7556 34 1 6.1280 -0.9307 0.4518 35 1 6.0046 0.7480 2.2726 36 1 5.8409 2.0455 1.0652 37 1 8.1951 0.4289 0.6421 38 1 7.5702 3.9257 4.4156 39 1 6.4187 2.9840 3.4381 40 1 6.9764 2.3555 5.0072 41 1 9.2605 2.7897 5.9350 42 1 10.7268 1.7834 5.8555 43 1 10.5408 3.1731 4.7594 44 1 11.0996 -1.0064 6.4682 45 1 3.7372 -0.8633 -1.4688 46 1 4.2527 -2.0245 -0.2170 47 1 2.1868 -1.7536 1.0000 48 1 1.7431 -1.9959 -0.7057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337795052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:17 Heat of formation + Delta-G solvation = -81.483269 kcal Electronic energy + Delta-G solvation = -27647.702220 eV Core-core repulsion = 23863.615109 eV Total energy + Delta-G solvation = -3784.087111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.23264 -38.34407 -37.88186 -37.04004 -36.90203 -34.92963 -34.48811 -31.83205 -30.91235 -30.29219 -27.54686 -27.21975 -26.96635 -24.94849 -23.61858 -22.66212 -22.41369 -20.36995 -18.80193 -18.55263 -18.34347 -18.25921 -17.42964 -16.91387 -16.60807 -16.29611 -15.97275 -15.60055 -15.27334 -15.07711 -14.84127 -14.55697 -14.47013 -14.18414 -14.15187 -13.73217 -13.50468 -13.44321 -13.33409 -13.23284 -13.14666 -12.98047 -12.93384 -12.85048 -12.72578 -12.64015 -12.54197 -12.24487 -12.18269 -12.11132 -11.88569 -11.65125 -11.36650 -11.16382 -10.48259 -10.43655 -9.70796 -9.65368 -9.30077 -8.07093 -6.21583 -0.28665 1.34226 1.47022 1.48886 1.57911 1.97915 2.47516 2.60002 2.95181 3.21504 3.46402 3.75946 3.81272 3.98471 4.06464 4.12398 4.28768 4.37278 4.42875 4.49424 4.56133 4.56351 4.71127 4.72706 4.80554 4.81030 4.82919 4.95076 4.96170 4.97788 5.00103 5.05020 5.09036 5.17213 5.18164 5.21663 5.28104 5.59535 5.63081 5.69182 5.86172 5.99888 6.04356 6.08487 6.17138 6.22404 6.31374 6.87964 7.48085 8.97519 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011583 B = 0.003671 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.858628 B = 7626.249295 C = 9095.708017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.125 4.125 3 C -0.177 4.177 4 C 0.075 3.925 5 N -0.541 5.541 6 C 0.056 3.944 7 C 0.123 3.877 8 N -1.118 6.118 9 S 2.801 3.199 10 O -1.007 7.007 11 O -1.018 7.018 12 N -0.996 5.996 13 C 0.100 3.900 14 C 0.273 3.727 15 H 0.026 0.974 16 C -0.139 4.139 17 C -0.527 4.527 18 H 0.070 0.930 19 C 0.016 3.984 20 N -0.919 5.919 21 Si 0.958 3.042 22 H -0.277 1.277 23 H -0.266 1.266 24 H -0.289 1.289 25 C 0.051 3.949 26 C -0.079 4.079 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.421 0.579 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.018 0.982 44 H 0.263 0.737 45 H 0.040 0.960 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.296 -0.868 -12.049 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.126 4.126 3 C -0.195 4.195 4 C -0.052 4.052 5 N -0.267 5.267 6 C -0.074 4.074 7 C -0.003 4.003 8 N -0.881 5.881 9 S 2.810 3.190 10 O -0.990 6.990 11 O -1.002 7.002 12 N -0.838 5.838 13 C -0.046 4.046 14 C 0.169 3.831 15 H 0.043 0.957 16 C -0.199 4.199 17 C -0.566 4.566 18 H 0.088 0.912 19 C -0.183 4.183 20 N -0.558 5.558 21 Si 0.784 3.216 22 H -0.203 1.203 23 H -0.190 1.190 24 H -0.215 1.215 25 C -0.077 4.077 26 C -0.116 4.116 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.256 0.744 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.884 -0.195 -11.836 21.447 hybrid contribution 0.346 -1.009 -0.115 1.073 sum -17.538 -1.205 -11.951 21.257 Atomic orbital electron populations 1.20924 0.91086 1.02787 1.02604 1.21250 0.96662 0.95054 0.99593 1.22174 0.94848 0.98325 1.04166 1.21082 0.92817 0.91951 0.99325 1.62307 1.03881 1.04573 1.55907 1.22203 0.87624 1.00110 0.97423 1.21236 0.77795 1.00540 1.00768 1.55643 1.16489 1.45116 1.70824 1.01063 0.71954 0.73303 0.72684 1.93520 1.76727 1.46246 1.82504 1.93542 1.34957 1.86417 1.85272 1.57578 1.37937 1.63780 1.24466 1.21394 0.87380 0.96492 0.99309 1.18389 0.86493 0.88463 0.89751 0.95668 1.21947 1.00370 0.97751 0.99813 1.21629 0.95140 1.11874 1.28002 0.91231 1.25678 0.95452 0.99925 0.97273 1.70022 1.07872 1.38421 1.39520 0.85557 0.78419 0.78684 0.78927 1.20261 1.19044 1.21525 1.22264 0.96112 0.94296 0.94997 1.20504 0.93321 0.95131 1.02665 0.91777 0.90796 0.91312 0.86329 0.89787 0.93535 0.93211 0.89219 0.91289 0.90676 0.74444 0.93007 0.90823 0.90489 0.93771 0.91196 0.96255 0.92797 0.94133 0.89555 0.90558 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 10.02 71.24 0.71 -0.72 16 2 C -0.13 -2.06 5.89 -15.40 -0.09 -2.15 16 3 C -0.18 -3.18 9.53 26.68 0.25 -2.92 16 4 C 0.08 1.50 5.26 85.39 0.45 1.95 16 5 N -0.54 -11.29 4.72 -900.92 -4.25 -15.54 16 6 C 0.06 1.19 5.09 86.30 0.44 1.63 16 7 C 0.12 3.22 6.17 86.38 0.53 3.75 16 8 N -1.12 -33.75 6.05 -187.50 -1.14 -34.89 16 9 S 2.80 107.81 6.09 -56.49 -0.34 107.46 16 10 O -1.01 -39.81 16.68 -128.00 -2.14 -41.94 16 11 O -1.02 -46.76 16.70 -128.00 -2.14 -48.90 16 12 N -1.00 -40.54 3.12 -520.45 -1.62 -42.16 16 13 C 0.10 3.41 9.28 127.77 1.19 4.59 16 14 C 0.27 13.40 2.62 44.24 0.12 13.52 16 15 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 16 C -0.14 -6.70 8.97 71.98 0.65 -6.06 16 17 C -0.53 -26.68 7.99 25.60 0.20 -26.47 16 18 H 0.07 3.37 7.33 -2.91 -0.02 3.35 16 19 C 0.02 0.85 5.30 84.66 0.45 1.30 16 20 N -0.92 -51.06 11.32 21.45 0.24 -50.82 16 21 Si 0.96 41.39 29.54 68.60 2.03 43.42 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 24 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 25 C 0.05 0.87 5.59 86.27 0.48 1.35 16 26 C -0.08 -1.22 6.05 29.75 0.18 -1.04 16 27 H 0.06 0.73 7.62 -2.39 -0.02 0.71 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.12 1.85 7.63 -2.91 -0.02 1.83 16 31 H 0.08 1.73 6.73 -2.39 -0.02 1.71 16 32 H 0.05 0.89 8.06 -2.38 -0.02 0.87 16 33 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.09 1.83 7.94 -2.38 -0.02 1.82 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 36 H 0.08 1.92 6.28 -2.39 -0.02 1.91 16 37 H 0.42 11.25 8.65 -96.75 -0.84 10.41 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.12 7.79 -2.38 -0.02 2.11 16 40 H 0.08 2.67 7.02 -2.39 -0.02 2.66 16 41 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16 42 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 43 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 45 H 0.04 0.66 8.08 -2.39 -0.02 0.64 16 46 H 0.09 1.35 7.92 -2.39 -0.02 1.33 16 47 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.47 388.38 -3.69 -69.16 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.10 Total: 25.49 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 5.56 Total: -11.28 kcal Atomic # 7 Polarization: -136.64 SS G_CDS: -6.77 Total: -143.41 kcal Atomic # 8 Polarization: -86.57 SS G_CDS: -4.27 Total: -90.84 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 107.81 SS G_CDS: -0.34 Total: 107.46 kcal Total: -65.47 -3.69 -69.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337795052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.322 kcal (2) G-P(sol) polarization free energy of solvation -65.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds