Wall clock time and date at job start Tue Mar 31 2020 17:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31942 * 119.40949 * 2 1 4 4 C 1.32172 * 121.80474 * 180.28749 * 3 2 1 5 5 O 1.35485 * 119.79657 * 179.70508 * 4 3 2 6 6 C 1.40349 * 120.40041 * 359.72664 * 4 3 2 7 7 C 1.43198 * 120.60044 * 179.97438 * 6 4 3 8 8 N 4.75878 * 139.47163 * 0.33017 * 3 1 2 9 9 C 1.39947 * 118.79973 * 359.97438 * 6 4 3 10 10 C 1.50699 * 120.82835 * 180.02562 * 9 6 4 11 11 C 1.38282 * 119.40207 * 179.74890 * 2 1 3 12 12 C 1.50703 * 120.26787 * 0.02562 * 11 2 1 13 13 C 1.53000 * 109.46912 * 269.72291 * 12 11 2 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 O 1.21273 * 120.00140 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99767 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00054 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47194 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47232 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00428 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99996 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00227 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.46731 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46922 * 120.00215 * 24 22 20 27 27 H 1.48498 * 109.46996 * 239.99688 * 24 22 20 28 28 H 1.09002 * 109.47038 * 270.25192 * 1 2 3 29 29 H 1.09006 * 109.46461 * 30.24841 * 1 2 3 30 30 H 1.08991 * 109.47471 * 150.24753 * 1 2 3 31 31 H 0.96701 * 113.99367 * 270.01880 * 5 4 3 32 32 H 1.08993 * 109.47695 * 269.98044 * 10 9 6 33 33 H 1.09005 * 109.46900 * 29.98580 * 10 9 6 34 34 H 1.09006 * 109.46915 * 149.97505 * 10 9 6 35 35 H 1.09002 * 109.47152 * 149.72063 * 12 11 2 36 36 H 1.09001 * 109.46980 * 29.72163 * 12 11 2 37 37 H 1.09001 * 109.47194 * 299.99742 * 13 12 11 38 38 H 1.08992 * 109.47399 * 59.99914 * 13 12 11 39 39 H 0.97005 * 119.99680 * 359.97438 * 16 14 13 40 40 H 1.08998 * 109.47245 * 300.00495 * 17 16 14 41 41 H 1.09002 * 109.47021 * 59.99873 * 17 16 14 42 42 H 1.09001 * 109.47375 * 300.00051 * 18 17 16 43 43 H 1.09002 * 109.47045 * 60.00127 * 18 17 16 44 44 H 1.09001 * 109.47289 * 299.99925 * 19 18 17 45 45 H 1.09002 * 109.47153 * 60.00008 * 19 18 17 46 46 H 0.96993 * 120.00405 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1549 1.1494 0.0000 4 6 3.4754 1.2046 -0.0056 5 8 4.0989 2.4075 -0.0114 6 6 4.2356 0.0249 -0.0061 7 6 5.6665 0.0797 -0.0127 8 7 6.8017 0.1232 -0.0178 9 6 3.5699 -1.2061 0.0001 10 6 4.3408 -2.5010 0.0004 11 6 2.1858 -1.2047 0.0053 12 6 1.4248 -2.5055 0.0104 13 6 1.1728 -2.9431 1.4546 14 6 0.4123 -4.2442 1.4597 15 8 0.1021 -4.7694 0.4115 16 7 0.0760 -4.8237 2.6292 17 6 -0.6637 -6.0881 2.6342 18 6 -0.9156 -6.5259 4.0784 19 6 -1.6876 -7.8468 4.0836 20 6 -1.9364 -8.2777 5.5061 21 1 -1.5792 -7.6704 6.3246 22 6 -2.6191 -9.4478 5.7627 23 7 -3.0537 -10.1877 4.7660 24 14 -2.9268 -9.9822 7.5260 25 1 -2.3404 -8.9835 8.4553 26 1 -4.3890 -10.0828 7.7647 27 1 -2.2950 -11.3057 7.7595 28 1 -0.3633 0.0045 1.0277 29 1 -0.3632 0.8878 -0.5177 30 1 -0.3634 -0.8921 -0.5099 31 1 4.2760 2.7543 -0.8966 32 1 4.5222 -2.8163 -1.0270 33 1 5.2937 -2.3564 0.5097 34 1 3.7643 -3.2670 0.5192 35 1 2.0076 -3.2694 -0.5044 36 1 0.4712 -2.3705 -0.5001 37 1 2.1264 -3.0781 1.9651 38 1 0.5901 -2.1793 1.9694 39 1 0.3239 -4.4034 3.4676 40 1 -1.6171 -5.9534 2.1234 41 1 -0.0807 -6.8521 2.1198 42 1 0.0380 -6.6608 4.5888 43 1 -1.4984 -5.7620 4.5932 44 1 -2.6413 -7.7123 3.5731 45 1 -1.1045 -8.6105 3.5690 46 1 -3.5336 -11.0110 4.9464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349297553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:43 Heat of formation + Delta-G solvation = -43.172619 kcal Electronic energy + Delta-G solvation = -26595.469077 eV Core-core repulsion = 22677.599290 eV Total energy + Delta-G solvation = -3917.869788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.56858 -39.66913 -38.23554 -37.17119 -35.63666 -35.07040 -34.14765 -33.36468 -31.52007 -30.68760 -29.20374 -28.28892 -26.83361 -24.95688 -23.37913 -22.68401 -21.85039 -20.78916 -19.90217 -19.25514 -18.82282 -18.00443 -17.01963 -16.46263 -16.33583 -15.83408 -15.55658 -14.97226 -14.66247 -14.49577 -14.42849 -14.15792 -14.14353 -13.75732 -13.66945 -13.58133 -13.30068 -13.12981 -12.99636 -12.75575 -12.59729 -12.34273 -12.31207 -12.17503 -12.02541 -11.85880 -11.73656 -11.28059 -10.95343 -10.78823 -10.60818 -10.13578 -10.04897 -9.94127 -9.92226 -9.45172 -9.21547 -9.12704 -8.85866 -8.41252 -6.05695 -4.08875 -0.07506 0.44803 2.14963 2.36699 2.67436 2.82392 3.10031 3.27240 3.31381 3.33218 3.35360 3.38775 3.87045 3.93505 4.23879 4.41157 4.44102 4.53350 4.63877 4.74033 4.84365 4.93061 4.99642 5.02683 5.14767 5.24524 5.26892 5.30270 5.39703 5.44302 5.57518 5.64803 5.68346 5.71005 5.75278 5.98905 6.10185 6.41149 6.53918 6.76642 6.78178 6.95016 6.98539 7.25960 7.59272 7.61831 7.71170 7.92890 8.28637 8.34574 8.98055 9.55667 11.05548 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021950 B = 0.001723 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.340902 B =16250.949546 C =16607.777772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.192 3.808 3 N -0.501 5.501 4 C 0.367 3.633 5 O -0.475 6.475 6 C -0.109 4.109 7 C 0.264 3.736 8 N -0.406 5.406 9 C 0.031 3.969 10 C -0.132 4.132 11 C -0.145 4.145 12 C -0.064 4.064 13 C -0.139 4.139 14 C 0.507 3.493 15 O -0.544 6.544 16 N -0.726 5.726 17 C 0.116 3.884 18 C -0.121 4.121 19 C 0.023 3.977 20 C -0.522 4.522 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.893 5.893 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.407 0.593 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.399 0.601 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.796 23.354 -12.456 28.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.054 3.946 3 N -0.220 5.220 4 C 0.184 3.816 5 O -0.283 6.283 6 C -0.116 4.116 7 C -0.052 4.052 8 N -0.082 5.082 9 C 0.022 3.978 10 C -0.188 4.188 11 C -0.148 4.148 12 C -0.102 4.102 13 C -0.179 4.179 14 C 0.292 3.708 15 O -0.422 6.422 16 N -0.377 5.377 17 C -0.007 4.007 18 C -0.159 4.159 19 C -0.015 4.015 20 C -0.561 4.561 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.532 5.532 24 Si 0.721 3.279 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.267 0.733 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.232 0.768 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.789 23.629 -12.652 29.698 hybrid contribution 0.066 -0.678 1.023 1.230 sum 12.855 22.951 -11.629 28.761 Atomic orbital electron populations 1.21008 0.87602 1.04666 1.04260 1.21185 0.97252 0.86228 0.89889 1.67173 1.08472 1.30157 1.16207 1.19000 0.86489 0.84102 0.91978 1.84734 1.76663 1.32647 1.34255 1.16914 0.85917 0.94285 1.14475 1.25070 0.91987 0.94053 0.94113 1.81277 1.11603 1.06857 1.08453 1.20199 0.93148 0.93977 0.90505 1.21066 1.00116 0.93380 1.04260 1.20528 0.92746 0.97030 1.04451 1.20373 1.01237 0.92283 0.96332 1.21677 1.01803 0.95974 0.98495 1.20526 0.79868 0.86311 0.84059 1.90713 1.54947 1.65107 1.31460 1.46251 1.57728 1.25485 1.08205 1.21651 0.95715 0.83594 0.99729 1.21889 1.00887 1.00879 0.92264 1.19036 0.95050 0.90003 0.97364 1.21237 1.35800 1.06721 0.92324 0.92593 1.25036 0.95721 0.96624 0.97115 1.69971 1.38215 1.14350 1.30691 0.86528 0.77936 0.78543 0.84937 1.19760 1.20979 1.20999 0.89180 0.89737 0.89114 0.73327 0.89028 0.90684 0.89115 0.89188 0.88699 0.88787 0.88577 0.76754 0.91719 0.91773 0.92749 0.92713 0.96262 0.96283 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.75 36.00 0.35 -0.24 16 2 C 0.19 1.32 6.78 -82.53 -0.56 0.76 16 3 N -0.50 -4.19 10.28 -9.20 -0.09 -4.28 16 4 C 0.37 2.91 7.76 -16.61 -0.13 2.78 16 5 O -0.48 -3.32 13.00 -18.15 -0.24 -3.56 16 6 C -0.11 -0.83 5.76 -106.54 -0.61 -1.44 16 7 C 0.26 2.37 13.51 -22.48 -0.30 2.06 16 8 N -0.41 -4.47 18.54 41.84 0.78 -3.69 16 9 C 0.03 0.21 5.95 -103.92 -0.62 -0.41 16 10 C -0.13 -0.71 8.89 36.01 0.32 -0.39 16 11 C -0.15 -0.92 5.14 -104.54 -0.54 -1.46 16 12 C -0.06 -0.42 3.55 -27.88 -0.10 -0.52 16 13 C -0.14 -0.96 5.57 -27.88 -0.16 -1.11 16 14 C 0.51 5.86 7.83 -10.98 -0.09 5.77 16 15 O -0.54 -8.47 15.98 5.56 0.09 -8.38 16 16 N -0.73 -8.76 5.56 -60.30 -0.33 -9.10 16 17 C 0.12 1.86 5.67 -4.05 -0.02 1.84 16 18 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 19 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 20 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 21 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 23 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 24 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.38 5.90 -51.93 -0.31 0.08 16 31 H 0.41 0.86 9.06 45.56 0.41 1.27 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.44 7.19 -51.93 -0.37 0.06 16 34 H 0.09 0.44 6.05 -51.93 -0.31 0.13 16 35 H 0.09 0.63 6.75 -51.93 -0.35 0.28 16 36 H 0.09 0.63 5.87 -51.93 -0.30 0.33 16 37 H 0.09 0.51 7.47 -51.93 -0.39 0.12 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.40 3.73 8.47 -40.82 -0.35 3.38 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -35.08 392.73 -7.05 -42.13 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.74 Total: -2.16 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -3.14 Total: -7.38 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 1.08 Total: -42.66 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.15 Total: -11.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.08 -7.05 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349297553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.038 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds