Wall clock time and date at job start Tue Mar 31 2020 17:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.34478 * 2 1 4 4 C 1.54341 * 110.30370 * 237.87167 * 2 1 3 5 5 C 1.54350 * 102.39006 * 214.73242 * 4 2 1 6 6 H 1.09002 * 110.30423 * 145.26874 * 5 4 2 7 7 N 1.46498 * 110.30175 * 267.32258 * 5 4 2 8 8 C 1.34777 * 119.99890 * 204.99745 * 7 5 4 9 9 O 1.21584 * 120.00068 * 0.02562 * 8 7 5 10 10 N 1.34774 * 120.00085 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00420 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47599 * 180.02562 * 11 10 8 13 13 O 1.21296 * 119.99862 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00409 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00164 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99996 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99955 * 180.02562 * 15 14 12 18 18 N 1.31406 * 119.99973 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99984 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46910 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46928 * 119.99675 * 19 17 15 22 22 H 1.48502 * 109.47102 * 240.00109 * 19 17 15 23 23 C 1.51366 * 105.16953 * 26.34770 * 5 4 2 24 24 C 1.38505 * 130.39376 * 162.81317 * 23 5 4 25 25 C 1.38096 * 120.21856 * 179.97438 * 24 23 5 26 26 C 1.38262 * 119.93357 * 359.65936 * 25 24 23 27 27 C 1.38101 * 119.93201 * 0.65369 * 26 25 24 28 28 C 1.38216 * 109.76158 * 342.81067 * 23 5 4 29 29 H 1.08993 * 109.47158 * 299.33276 * 1 2 3 30 30 H 1.09004 * 109.46692 * 59.33116 * 1 2 3 31 31 H 1.09006 * 109.47260 * 179.32797 * 1 2 3 32 32 H 1.08999 * 109.47067 * 180.67369 * 3 2 1 33 33 H 1.09005 * 109.47059 * 300.66924 * 3 2 1 34 34 H 1.09000 * 109.47437 * 60.67056 * 3 2 1 35 35 H 1.09008 * 110.82286 * 332.95245 * 4 2 1 36 36 H 1.08993 * 110.82506 * 96.30736 * 4 2 1 37 37 H 0.96998 * 119.99815 * 25.00399 * 7 5 4 38 38 H 0.97002 * 119.99643 * 359.97438 * 10 8 7 39 39 H 1.09007 * 109.46909 * 300.00497 * 11 10 8 40 40 H 1.09004 * 109.47166 * 59.99649 * 11 10 8 41 41 H 0.96997 * 119.99748 * 359.97438 * 14 12 11 42 42 H 0.97004 * 120.00431 * 179.97438 * 18 17 15 43 43 H 1.08004 * 119.88725 * 0.02562 * 24 23 5 44 44 H 1.07999 * 120.03585 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.03004 * 180.32384 * 26 25 24 46 46 H 1.08002 * 119.89454 * 179.65977 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4345 0.0000 4 6 2.0656 -0.7698 -1.2258 5 6 3.3425 -1.4338 -0.6680 6 1 3.4900 -2.4127 -1.1242 7 7 4.5075 -0.5796 -0.9117 8 6 5.7384 -1.1236 -0.9846 9 8 5.8820 -2.3232 -0.8486 10 7 6.8103 -0.3378 -1.2082 11 6 8.1483 -0.9291 -1.2880 12 6 9.1627 0.1559 -1.5423 13 8 8.8033 1.3097 -1.6471 14 7 10.4691 -0.1557 -1.6544 15 6 11.3920 0.8314 -1.8852 16 1 11.0721 1.8588 -1.9776 17 6 12.7389 0.5100 -2.0012 18 7 13.1280 -0.7401 -1.8892 19 14 13.9963 1.8549 -2.3164 20 1 13.3065 3.1672 -2.4020 21 1 14.9797 1.8837 -1.2041 22 1 14.7021 1.5831 -3.5944 23 6 3.0965 -1.5787 0.8185 24 6 3.7336 -2.3690 1.7608 25 6 3.3320 -2.3359 3.0816 26 6 2.2952 -1.5062 3.4669 27 6 1.6545 -0.7223 2.5277 28 6 2.0552 -0.7549 1.2023 29 1 -0.3633 0.5034 0.8958 30 1 -0.3633 0.5242 -0.8840 31 1 -0.3634 -1.0276 -0.0121 32 1 3.1517 1.4179 -0.0121 33 1 1.6967 1.9574 -0.8840 34 1 1.7163 1.9502 0.8959 35 1 1.3490 -1.5229 -1.5539 36 1 2.3050 -0.0849 -2.0392 37 1 4.3929 0.3774 -1.0204 38 1 6.6957 0.6193 -1.3171 39 1 8.3806 -1.4303 -0.3484 40 1 8.1777 -1.6527 -2.1027 41 1 10.7564 -1.0784 -1.5710 42 1 14.0682 -0.9647 -1.9706 43 1 4.5477 -3.0126 1.4617 44 1 3.8305 -2.9537 3.8139 45 1 1.9833 -1.4752 4.5005 46 1 0.8411 -0.0786 2.8284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358278019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:11 Heat of formation + Delta-G solvation = -48.260285 kcal Electronic energy + Delta-G solvation = -27880.405031 eV Core-core repulsion = 23962.314626 eV Total energy + Delta-G solvation = -3918.090405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09369 -39.47537 -38.14945 -36.87834 -34.56848 -34.26181 -33.62882 -31.52514 -31.28465 -30.15754 -28.83410 -27.64720 -27.26935 -24.60533 -23.80861 -22.84739 -21.33717 -20.54867 -19.58493 -19.51959 -18.42163 -17.95504 -16.86304 -15.96941 -15.61627 -15.52877 -15.31489 -15.13446 -14.89270 -14.50518 -14.18979 -14.09097 -13.99150 -13.79120 -13.76318 -13.42639 -13.13919 -12.86828 -12.52725 -12.30449 -12.16817 -12.08512 -11.91017 -11.77283 -11.62693 -11.36065 -11.29066 -11.13674 -10.76744 -10.71069 -10.40545 -10.32102 -10.02573 -9.63911 -9.17499 -8.91938 -8.75963 -8.61404 -8.59791 -8.09090 -6.50682 -3.92563 1.18275 1.30102 2.86009 3.10684 3.22832 3.29617 3.40528 3.68969 3.76335 4.07879 4.10434 4.18946 4.46577 4.62930 4.72163 4.79069 4.91238 4.92745 4.95377 5.01654 5.18178 5.26012 5.33410 5.34064 5.43683 5.47258 5.57431 5.63417 5.66869 5.76576 5.84223 5.88593 5.94450 5.96253 6.02234 6.04402 6.09696 6.34616 6.43641 6.53751 6.57961 6.77360 6.89507 7.11955 7.46953 7.93623 8.25411 8.46269 8.81869 9.05694 9.40691 9.88587 10.66341 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.002262 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.599963 B =12372.776077 C =12804.136007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.138 4.138 4 C -0.120 4.120 5 C 0.203 3.797 6 H 0.099 0.901 7 N -0.737 5.737 8 C 0.706 3.294 9 O -0.596 6.596 10 N -0.724 5.724 11 C 0.129 3.871 12 C 0.429 3.571 13 O -0.598 6.598 14 N -0.550 5.550 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.108 4.108 24 C -0.083 4.083 25 C -0.126 4.126 26 C -0.116 4.116 27 C -0.112 4.112 28 C -0.077 4.077 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.395 0.605 38 H 0.406 0.594 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.958 -1.303 5.743 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 C -0.195 4.195 4 C -0.158 4.158 5 C 0.098 3.902 6 H 0.117 0.883 7 N -0.393 5.393 8 C 0.406 3.594 9 O -0.475 6.475 10 N -0.382 5.382 11 C 0.001 3.999 12 C 0.215 3.785 13 O -0.485 6.485 14 N -0.185 5.185 15 C -0.433 4.433 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.109 4.109 24 C -0.101 4.101 25 C -0.144 4.144 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.078 4.078 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.230 0.770 38 H 0.243 0.757 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.083 0.917 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -24.803 -1.717 5.749 25.518 hybrid contribution 0.928 0.867 0.008 1.270 sum -23.875 -0.850 5.758 24.575 Atomic orbital electron populations 1.21829 0.93520 1.02087 1.01964 1.20130 0.95815 0.95040 0.91795 1.21892 1.01182 0.94164 1.02267 1.22756 0.95940 1.00013 0.97129 1.20058 0.84228 0.95349 0.90579 0.88327 1.45197 1.04964 1.10661 1.78517 1.15874 0.80373 0.85342 0.77859 1.90885 1.85125 1.13124 1.58320 1.44776 1.05126 1.11498 1.76758 1.20774 0.81032 0.95300 1.02824 1.19775 0.83816 0.89430 0.85504 1.90491 1.79580 1.20747 1.57638 1.41793 1.04596 1.10932 1.61147 1.19770 0.86445 0.90922 1.46187 0.87659 1.25325 0.98142 0.97330 0.96978 1.69621 1.17681 1.17090 1.49102 0.85762 0.79862 0.80555 0.77935 1.19152 1.20619 1.20619 1.20872 0.96474 0.97336 0.96229 1.20839 0.98841 0.98174 0.92294 1.21093 0.97719 0.99668 0.95894 1.21044 0.96490 0.96755 0.99108 1.20528 1.00443 1.00134 0.91863 1.20454 0.96606 0.96818 0.93918 0.92457 0.92187 0.92319 0.92377 0.91848 0.92200 0.89276 0.89461 0.76961 0.75686 0.90083 0.90018 0.77024 0.91652 0.85597 0.85982 0.86106 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.32 37.16 0.31 -0.55 16 2 C -0.03 -0.22 0.89 -154.63 -0.14 -0.35 16 3 C -0.14 -1.03 8.46 37.15 0.31 -0.71 16 4 C -0.12 -0.96 5.69 -25.32 -0.14 -1.10 16 5 C 0.20 2.27 3.20 -68.05 -0.22 2.06 16 6 H 0.10 1.24 7.56 -51.93 -0.39 0.85 16 7 N -0.74 -9.12 5.02 -58.79 -0.30 -9.41 16 8 C 0.71 11.50 8.56 -86.92 -0.74 10.75 16 9 O -0.60 -11.41 15.99 5.29 0.08 -11.32 16 10 N -0.72 -12.33 5.53 -66.42 -0.37 -12.69 16 11 C 0.13 2.43 6.15 -5.20 -0.03 2.40 16 12 C 0.43 9.91 7.85 -10.99 -0.09 9.82 16 13 O -0.60 -15.35 15.24 5.54 0.08 -15.26 16 14 N -0.55 -13.71 5.29 -10.97 -0.06 -13.77 16 15 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 16 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.89 -23.99 13.05 55.50 0.72 -23.27 16 19 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.11 -1.27 5.77 -104.20 -0.60 -1.87 16 24 C -0.08 -1.05 10.04 -39.54 -0.40 -1.45 16 25 C -0.13 -1.36 10.05 -39.62 -0.40 -1.76 16 26 C -0.12 -1.11 10.05 -39.62 -0.40 -1.51 16 27 C -0.11 -1.06 9.76 -39.54 -0.39 -1.45 16 28 C -0.08 -0.78 4.92 -104.20 -0.51 -1.29 16 29 H 0.06 0.34 7.92 -51.93 -0.41 -0.07 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 6.25 -51.93 -0.32 0.16 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.61 7.90 -51.92 -0.41 0.20 16 36 H 0.09 0.61 7.83 -51.93 -0.41 0.20 16 37 H 0.40 4.13 6.82 -40.82 -0.28 3.85 16 38 H 0.41 6.75 7.45 -40.82 -0.30 6.44 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.12 0.88 7.87 -52.49 -0.41 0.46 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -31.93 381.87 -9.35 -41.28 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -6.58 Total: 18.01 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -3.67 Total: 5.11 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.00 Total: -59.14 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: 0.17 Total: -26.59 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.93 -9.35 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.981 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds