Wall clock time and date at job start Tue Mar 31 2020 17:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.34478 * 2 1 4 4 C 1.54341 * 110.30370 * 237.87167 * 2 1 3 5 5 C 1.54350 * 102.39006 * 214.73242 * 4 2 1 6 6 H 1.09002 * 110.30423 * 145.26874 * 5 4 2 7 7 N 1.46498 * 110.30175 * 267.32258 * 5 4 2 8 8 C 1.34777 * 119.99890 * 204.99745 * 7 5 4 9 9 O 1.21584 * 120.00068 * 0.02562 * 8 7 5 10 10 N 1.34774 * 120.00085 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00420 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47599 * 180.02562 * 11 10 8 13 13 O 1.21296 * 119.99862 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00409 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00164 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99996 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99955 * 180.02562 * 15 14 12 18 18 N 1.31406 * 119.99973 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99984 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46910 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46928 * 119.99675 * 19 17 15 22 22 H 1.48502 * 109.47102 * 240.00109 * 19 17 15 23 23 C 1.51366 * 105.16953 * 26.34770 * 5 4 2 24 24 C 1.38505 * 130.39376 * 162.81317 * 23 5 4 25 25 C 1.38096 * 120.21856 * 179.97438 * 24 23 5 26 26 C 1.38262 * 119.93357 * 359.65936 * 25 24 23 27 27 C 1.38101 * 119.93201 * 0.65369 * 26 25 24 28 28 C 1.38216 * 109.76158 * 342.81067 * 23 5 4 29 29 H 1.08993 * 109.47158 * 299.33276 * 1 2 3 30 30 H 1.09004 * 109.46692 * 59.33116 * 1 2 3 31 31 H 1.09006 * 109.47260 * 179.32797 * 1 2 3 32 32 H 1.08999 * 109.47067 * 180.67369 * 3 2 1 33 33 H 1.09005 * 109.47059 * 300.66924 * 3 2 1 34 34 H 1.09000 * 109.47437 * 60.67056 * 3 2 1 35 35 H 1.09008 * 110.82286 * 332.95245 * 4 2 1 36 36 H 1.08993 * 110.82506 * 96.30736 * 4 2 1 37 37 H 0.96998 * 119.99815 * 25.00399 * 7 5 4 38 38 H 0.97002 * 119.99643 * 359.97438 * 10 8 7 39 39 H 1.09007 * 109.46909 * 300.00497 * 11 10 8 40 40 H 1.09004 * 109.47166 * 59.99649 * 11 10 8 41 41 H 0.96997 * 119.99748 * 359.97438 * 14 12 11 42 42 H 0.97004 * 120.00431 * 179.97438 * 18 17 15 43 43 H 1.08004 * 119.88725 * 0.02562 * 24 23 5 44 44 H 1.07999 * 120.03585 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.03004 * 180.32384 * 26 25 24 46 46 H 1.08002 * 119.89454 * 179.65977 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4345 0.0000 4 6 2.0656 -0.7698 -1.2258 5 6 3.3425 -1.4338 -0.6680 6 1 3.4900 -2.4127 -1.1242 7 7 4.5075 -0.5796 -0.9117 8 6 5.7384 -1.1236 -0.9846 9 8 5.8820 -2.3232 -0.8486 10 7 6.8103 -0.3378 -1.2082 11 6 8.1483 -0.9291 -1.2880 12 6 9.1627 0.1559 -1.5423 13 8 8.8033 1.3097 -1.6471 14 7 10.4691 -0.1557 -1.6544 15 6 11.3920 0.8314 -1.8852 16 1 11.0721 1.8588 -1.9776 17 6 12.7389 0.5100 -2.0012 18 7 13.1280 -0.7401 -1.8892 19 14 13.9963 1.8549 -2.3164 20 1 13.3065 3.1672 -2.4020 21 1 14.9797 1.8837 -1.2041 22 1 14.7021 1.5831 -3.5944 23 6 3.0965 -1.5787 0.8185 24 6 3.7336 -2.3690 1.7608 25 6 3.3320 -2.3359 3.0816 26 6 2.2952 -1.5062 3.4669 27 6 1.6545 -0.7223 2.5277 28 6 2.0552 -0.7549 1.2023 29 1 -0.3633 0.5034 0.8958 30 1 -0.3633 0.5242 -0.8840 31 1 -0.3634 -1.0276 -0.0121 32 1 3.1517 1.4179 -0.0121 33 1 1.6967 1.9574 -0.8840 34 1 1.7163 1.9502 0.8959 35 1 1.3490 -1.5229 -1.5539 36 1 2.3050 -0.0849 -2.0392 37 1 4.3929 0.3774 -1.0204 38 1 6.6957 0.6193 -1.3171 39 1 8.3806 -1.4303 -0.3484 40 1 8.1777 -1.6527 -2.1027 41 1 10.7564 -1.0784 -1.5710 42 1 14.0682 -0.9647 -1.9706 43 1 4.5477 -3.0126 1.4617 44 1 3.8305 -2.9537 3.8139 45 1 1.9833 -1.4752 4.5005 46 1 0.8411 -0.0786 2.8284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358278019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:10 Heat of formation + Delta-G solvation = -69.206499 kcal Electronic energy + Delta-G solvation = -27881.313327 eV Core-core repulsion = 23962.314626 eV Total energy + Delta-G solvation = -3918.998701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97423 -40.82736 -39.89891 -37.66812 -36.25993 -35.40486 -35.25454 -33.38545 -32.36929 -30.91538 -29.78871 -28.76567 -28.12579 -26.40063 -24.69351 -23.62619 -22.44050 -21.62008 -21.35405 -20.29681 -20.10141 -19.56327 -17.90291 -17.44830 -16.99400 -16.66305 -16.58674 -16.30177 -16.03869 -15.98430 -15.55053 -15.44633 -15.18214 -14.78280 -14.63779 -14.46286 -14.04756 -13.95506 -13.63430 -13.55566 -13.50058 -13.18559 -12.92184 -12.91382 -12.70013 -12.45059 -12.44162 -12.12637 -12.11463 -11.92081 -11.58410 -11.45531 -11.43937 -11.36242 -10.56348 -10.42868 -10.11031 -9.90197 -9.74200 -9.54695 -8.51501 -6.01701 0.35675 0.47532 1.34785 1.42295 1.55715 1.65322 1.88950 2.11160 2.28358 2.82734 3.06992 3.15709 3.33283 3.37231 3.49344 3.96902 4.00201 4.10692 4.17007 4.20396 4.25503 4.33446 4.41938 4.44934 4.55224 4.62139 4.67345 4.83158 4.85430 4.97076 5.00706 5.03829 5.09192 5.16798 5.26877 5.30446 5.31776 5.38536 5.42117 5.54044 5.59273 5.62003 5.74704 5.90879 5.95269 6.10497 6.47512 7.00983 7.03059 7.42173 7.53078 7.93761 8.65737 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.002262 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.599963 B =12372.776077 C =12804.136007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.024 4.024 3 C -0.138 4.138 4 C -0.112 4.112 5 C 0.199 3.801 6 H 0.078 0.922 7 N -0.720 5.720 8 C 0.705 3.295 9 O -0.627 6.627 10 N -0.725 5.725 11 C 0.143 3.857 12 C 0.434 3.566 13 O -0.623 6.623 14 N -0.560 5.560 15 C -0.336 4.336 16 H 0.086 0.914 17 C -0.012 4.012 18 N -0.917 5.917 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.129 4.129 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.115 4.115 27 C -0.114 4.114 28 C -0.076 4.076 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.407 0.593 38 H 0.409 0.591 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.099 0.901 44 H 0.133 0.867 45 H 0.147 0.853 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.708 -0.024 5.966 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.024 4.024 3 C -0.195 4.195 4 C -0.150 4.150 5 C 0.094 3.906 6 H 0.096 0.904 7 N -0.376 5.376 8 C 0.405 3.595 9 O -0.508 6.508 10 N -0.382 5.382 11 C 0.014 3.986 12 C 0.221 3.779 13 O -0.511 6.511 14 N -0.195 5.195 15 C -0.465 4.465 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.557 5.557 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.155 4.155 26 C -0.133 4.133 27 C -0.132 4.132 28 C -0.077 4.077 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.244 0.756 38 H 0.246 0.754 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.151 0.849 45 H 0.165 0.835 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.595 -0.436 5.976 27.262 hybrid contribution 1.391 0.435 -0.008 1.457 sum -25.205 -0.001 5.968 25.901 Atomic orbital electron populations 1.21809 0.91846 1.02351 1.03043 1.20158 0.97026 0.94819 0.90386 1.21912 1.00295 0.93991 1.03336 1.22795 0.94176 1.00431 0.97581 1.20236 0.84950 0.94677 0.90765 0.90423 1.45129 1.03974 1.11421 1.77110 1.15989 0.81116 0.84829 0.77609 1.90868 1.85694 1.14517 1.59698 1.44694 1.04690 1.11602 1.77226 1.20564 0.80765 0.93769 1.03485 1.20394 0.83874 0.89927 0.83671 1.90466 1.80065 1.22285 1.58324 1.41840 1.05086 1.10715 1.61859 1.19769 0.87674 0.90705 1.48339 0.89564 1.26145 0.99387 0.99605 0.96084 1.69687 1.18465 1.18463 1.49060 0.84805 0.77298 0.77575 0.78261 1.19389 1.19648 1.19594 1.20980 0.97570 0.98253 0.96282 1.20841 0.99187 0.99102 0.93749 1.21285 0.98454 1.00380 0.95336 1.21386 0.95567 0.95788 1.00566 1.20889 1.00758 1.00007 0.91550 1.20763 0.95723 0.96191 0.95015 0.91788 0.90748 0.92484 0.93756 0.90092 0.91878 0.87903 0.88068 0.75609 0.75355 0.89390 0.89005 0.76725 0.91069 0.88237 0.84947 0.83488 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.32 71.98 0.60 -0.65 16 2 C -0.02 -0.32 0.89 -52.26 -0.05 -0.36 16 3 C -0.14 -1.71 8.46 71.98 0.61 -1.10 16 4 C -0.11 -1.57 5.69 31.51 0.18 -1.39 16 5 C 0.20 4.44 3.20 44.92 0.14 4.58 16 6 H 0.08 2.05 7.56 -2.39 -0.02 2.03 16 7 N -0.72 -17.73 5.02 -458.19 -2.30 -20.03 16 8 C 0.70 23.27 8.56 179.06 1.53 24.81 16 9 O -0.63 -24.73 15.99 -3.98 -0.06 -24.79 16 10 N -0.72 -24.78 5.53 -482.30 -2.67 -27.45 16 11 C 0.14 5.41 6.15 85.63 0.53 5.94 16 12 C 0.43 20.35 7.85 87.66 0.69 21.03 16 13 O -0.62 -32.44 15.24 -3.08 -0.05 -32.49 16 14 N -0.56 -28.44 5.29 -306.99 -1.62 -30.06 16 15 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 16 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 17 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 18 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 19 Si 1.00 41.95 29.55 68.60 2.03 43.98 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 23 C -0.13 -3.08 5.77 -19.59 -0.11 -3.20 16 24 C -0.11 -2.93 10.04 22.30 0.22 -2.70 16 25 C -0.14 -2.96 10.05 22.24 0.22 -2.74 16 26 C -0.12 -2.02 10.05 22.24 0.22 -1.79 16 27 C -0.11 -1.91 9.76 22.30 0.22 -1.70 16 28 C -0.08 -1.42 4.92 -19.59 -0.10 -1.51 16 29 H 0.06 0.53 7.92 -2.39 -0.02 0.52 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.57 8.13 -2.38 -0.02 0.55 16 32 H 0.04 0.67 6.25 -2.39 -0.01 0.65 16 33 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 1.19 7.90 -2.38 -0.02 1.17 16 36 H 0.10 1.16 7.83 -2.39 -0.02 1.14 16 37 H 0.41 8.17 6.82 -92.71 -0.63 7.53 16 38 H 0.41 13.59 7.45 -92.71 -0.69 12.90 16 39 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 40 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 41 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 42 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.10 3.07 8.06 -2.91 -0.02 3.05 16 44 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 46 H 0.14 1.63 7.87 -2.91 -0.02 1.61 16 Total: -1.00 -69.49 381.87 0.78 -68.72 By element: Atomic # 1 Polarization: 50.66 SS G_CDS: -1.03 Total: 49.64 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 6.19 Total: 21.27 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -6.31 Total: -126.32 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -0.11 Total: -57.28 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -69.49 0.78 -68.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.488 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds