Wall clock time and date at job start Tue Mar 31 2020 17:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.26924 * 2 1 4 4 C 1.54337 * 110.30316 * 237.92313 * 2 1 3 5 5 C 1.54603 * 102.27531 * 267.39229 * 4 2 1 6 6 H 1.08995 * 110.36942 * 214.67652 * 5 4 2 7 7 N 1.46509 * 110.30436 * 92.58089 * 5 4 2 8 8 C 1.34776 * 119.99680 * 157.78012 * 7 5 4 9 9 O 1.21586 * 120.00181 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.46494 * 120.00226 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47304 * 179.97438 * 11 10 8 13 13 O 1.21290 * 120.00292 * 0.02562 * 12 11 10 14 14 N 1.34786 * 119.99898 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99767 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00043 * 0.02562 * 15 14 12 17 17 C 1.38952 * 119.99973 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99979 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99708 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47054 * 90.00198 * 19 17 15 21 21 H 1.48500 * 109.46808 * 210.00213 * 19 17 15 22 22 H 1.48502 * 109.47318 * 329.99952 * 19 17 15 23 23 C 1.51369 * 105.18655 * 333.64614 * 5 4 2 24 24 C 1.38493 * 130.38930 * 197.18445 * 23 5 4 25 25 C 1.38103 * 120.21481 * 180.02562 * 24 23 5 26 26 C 1.38244 * 119.93599 * 359.97438 * 25 24 23 27 27 C 1.38105 * 119.93515 * 359.97438 * 26 25 24 28 28 C 1.38212 * 109.75634 * 17.20001 * 23 5 4 29 29 H 1.09001 * 109.47002 * 60.69928 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.70365 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.70194 * 1 2 3 32 32 H 1.09001 * 109.47070 * 59.29913 * 3 2 1 33 33 H 1.08998 * 109.47264 * 179.29363 * 3 2 1 34 34 H 1.09003 * 109.47093 * 299.29796 * 3 2 1 35 35 H 1.08998 * 110.82488 * 25.65057 * 4 2 1 36 36 H 1.09002 * 110.82428 * 149.19699 * 4 2 1 37 37 H 0.97003 * 119.99667 * 337.77584 * 7 5 4 38 38 H 0.97003 * 119.99593 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46991 * 299.99917 * 11 10 8 40 40 H 1.08998 * 109.47102 * 59.99900 * 11 10 8 41 41 H 0.96996 * 119.99837 * 359.97438 * 14 12 11 42 42 H 0.97000 * 119.99786 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.89362 * 0.04360 * 24 23 5 44 44 H 1.08004 * 120.03170 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.03330 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.89586 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0656 -0.7687 -1.2265 5 6 2.2441 -2.1985 -0.6661 6 1 3.1099 -2.6791 -1.1215 7 7 1.0372 -2.9933 -0.9070 8 6 1.1086 -4.3391 -0.9225 9 8 2.1745 -4.8935 -0.7360 10 7 -0.0017 -5.0703 -1.1436 11 6 0.0757 -6.5331 -1.1598 12 6 -1.2928 -7.1057 -1.4248 13 8 -2.2397 -6.3648 -1.5849 14 7 -1.4645 -8.4412 -1.4850 15 6 -2.7094 -8.9621 -1.7266 16 1 -3.5525 -8.3023 -1.8691 17 6 -2.8865 -10.3389 -1.7881 18 7 -4.0798 -10.8382 -2.0202 19 14 -1.4281 -11.4800 -1.5424 20 1 -1.2962 -11.8112 -0.1008 21 1 -1.6394 -12.7276 -2.3196 22 1 -0.1895 -10.8084 -2.0114 23 6 2.4655 -2.0170 0.8203 24 6 2.9846 -2.8884 1.7633 25 6 3.0933 -2.4992 3.0838 26 6 2.6832 -1.2357 3.4667 27 6 2.1663 -0.3649 2.5276 28 6 2.0552 -0.7539 1.2029 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.6938 1.9578 0.8836 33 1 3.1499 1.4201 0.0127 34 1 1.7142 1.9503 -0.8962 35 1 1.3387 -0.7572 -2.0387 36 1 3.0208 -0.3584 -1.5542 37 1 0.1867 -2.5509 -1.0553 38 1 -0.8523 -4.6279 -1.2912 39 1 0.7616 -6.8519 -1.9448 40 1 0.4373 -6.8886 -0.1949 41 1 -0.7071 -9.0337 -1.3581 42 1 -4.2033 -11.7993 -2.0635 43 1 3.3058 -3.8755 1.4648 44 1 3.4989 -3.1810 3.8167 45 1 2.7679 -0.9295 4.4989 46 1 1.8466 0.6222 2.8273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358278020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:15 Heat of formation + Delta-G solvation = -41.036075 kcal Electronic energy + Delta-G solvation = -27963.086513 eV Core-core repulsion = 24045.309373 eV Total energy + Delta-G solvation = -3917.777140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12616 -39.56090 -38.33051 -36.90911 -34.63753 -34.32251 -33.71539 -31.81772 -31.46365 -30.18178 -28.88826 -27.67698 -27.44318 -24.52196 -23.77630 -22.87676 -21.36623 -20.58826 -19.65357 -19.55171 -18.83395 -18.08640 -16.89977 -16.04925 -15.68145 -15.53296 -15.36330 -15.20544 -15.06405 -14.66069 -14.23465 -14.16232 -14.01170 -13.83149 -13.77576 -13.18038 -13.13040 -12.90927 -12.55062 -12.48043 -12.32729 -12.17012 -12.15470 -11.98928 -11.81727 -11.39390 -11.31756 -11.22836 -10.80432 -10.73355 -10.63807 -10.10995 -10.05372 -9.69343 -9.23166 -8.94736 -8.79195 -8.76046 -8.68449 -8.29923 -6.40440 -3.92945 1.15680 1.27786 2.78801 3.00150 3.04882 3.12948 3.32850 3.58338 3.65986 4.03935 4.04764 4.16187 4.32710 4.58776 4.63193 4.69424 4.75731 4.90427 4.92660 4.98983 5.14696 5.23360 5.30859 5.32151 5.40970 5.44492 5.55011 5.59717 5.64338 5.67007 5.74702 5.80538 5.84430 5.86186 5.86723 5.94357 6.01912 6.32227 6.41192 6.48685 6.54759 6.65413 6.87029 7.04445 7.45548 8.00769 8.17936 8.44976 8.74440 8.82191 9.30365 9.64207 10.71762 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.002403 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.264713 B =11647.741754 C =12199.485444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.028 4.028 3 C -0.137 4.137 4 C -0.120 4.120 5 C 0.204 3.796 6 H 0.097 0.903 7 N -0.737 5.737 8 C 0.707 3.293 9 O -0.596 6.596 10 N -0.725 5.725 11 C 0.127 3.873 12 C 0.439 3.561 13 O -0.579 6.579 14 N -0.577 5.577 15 C -0.310 4.310 16 H 0.121 0.879 17 C 0.045 3.955 18 N -0.875 5.875 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.108 4.108 24 C -0.082 4.082 25 C -0.126 4.126 26 C -0.115 4.115 27 C -0.112 4.112 28 C -0.077 4.077 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.396 0.604 38 H 0.407 0.593 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.374 0.626 42 H 0.275 0.725 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.321 22.632 6.153 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.194 4.194 4 C -0.158 4.158 5 C 0.099 3.901 6 H 0.115 0.885 7 N -0.393 5.393 8 C 0.407 3.593 9 O -0.475 6.475 10 N -0.382 5.382 11 C -0.002 4.002 12 C 0.225 3.775 13 O -0.464 6.464 14 N -0.214 5.214 15 C -0.438 4.438 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.514 5.514 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.110 4.110 24 C -0.101 4.101 25 C -0.144 4.144 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.078 4.078 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.231 0.769 38 H 0.245 0.755 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.208 0.792 42 H 0.086 0.914 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.486 22.372 6.150 27.895 hybrid contribution 0.177 -0.825 0.226 0.874 sum 15.662 21.546 6.375 27.390 Atomic orbital electron populations 1.21897 0.93122 1.02249 1.02288 1.20128 0.95825 0.95070 0.91758 1.21830 1.01094 0.94509 1.01994 1.22795 1.02742 0.93108 0.97131 1.20112 0.88349 0.91036 0.90638 0.88505 1.45199 1.11471 1.04495 1.78112 1.15853 0.84237 0.81367 0.77888 1.90881 1.28091 1.70883 1.57611 1.44754 1.10539 1.06331 1.76624 1.20790 0.96747 0.79706 1.02937 1.19671 0.89657 0.83162 0.85043 1.90533 1.42065 1.58333 1.55434 1.42118 1.10433 1.05281 1.63617 1.19436 0.85915 0.92021 1.46439 0.86108 1.25067 0.96954 0.96780 0.97132 1.69621 1.21203 1.13415 1.47148 0.86670 0.82116 0.81423 0.79287 1.19400 1.19996 1.19188 1.20854 0.99532 0.94381 0.96196 1.20844 0.97485 0.99504 0.92254 1.21092 1.00909 0.96519 0.95918 1.21044 0.99118 0.94070 0.99129 1.20533 1.00883 0.99678 0.91876 1.20454 0.98226 0.95148 0.93925 0.91833 0.92341 0.92186 0.92440 0.92332 0.92165 0.89429 0.89217 0.76886 0.75547 0.89891 0.89958 0.79235 0.91400 0.85546 0.86006 0.86099 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.44 37.16 0.31 -0.69 16 2 C -0.03 -0.21 0.88 -154.63 -0.14 -0.35 16 3 C -0.14 -0.83 8.30 37.16 0.31 -0.53 16 4 C -0.12 -0.90 5.70 -25.19 -0.14 -1.05 16 5 C 0.20 2.18 3.17 -67.91 -0.22 1.97 16 6 H 0.10 1.16 7.64 -51.93 -0.40 0.77 16 7 N -0.74 -8.68 5.01 -58.65 -0.29 -8.98 16 8 C 0.71 10.96 8.55 -86.92 -0.74 10.22 16 9 O -0.60 -10.85 15.85 5.29 0.08 -10.76 16 10 N -0.73 -11.72 5.53 -66.42 -0.37 -12.08 16 11 C 0.13 2.23 6.15 -5.20 -0.03 2.19 16 12 C 0.44 9.68 7.85 -10.98 -0.09 9.59 16 13 O -0.58 -14.63 15.24 5.55 0.08 -14.55 16 14 N -0.58 -13.46 5.09 -10.96 -0.06 -13.51 16 15 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 16 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 17 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 18 N -0.87 -25.03 13.96 55.50 0.77 -24.26 16 19 Si 0.88 19.07 27.74 -169.99 -4.71 14.35 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 23 C -0.11 -1.24 5.76 -104.21 -0.60 -1.84 16 24 C -0.08 -1.02 10.04 -39.54 -0.40 -1.41 16 25 C -0.13 -1.34 10.05 -39.63 -0.40 -1.73 16 26 C -0.12 -1.09 10.05 -39.63 -0.40 -1.48 16 27 C -0.11 -1.04 9.78 -39.53 -0.39 -1.43 16 28 C -0.08 -0.75 4.92 -104.21 -0.51 -1.26 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 6.35 -51.93 -0.33 0.15 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.33 8.00 -51.93 -0.42 -0.08 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.57 7.81 -51.93 -0.41 0.17 16 36 H 0.09 0.58 7.92 -51.93 -0.41 0.17 16 37 H 0.40 3.92 6.91 -40.82 -0.28 3.64 16 38 H 0.41 6.47 7.45 -40.82 -0.30 6.16 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 42 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.13 1.71 7.87 -52.48 -0.41 1.30 16 44 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.86 7.92 -52.49 -0.42 0.44 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -32.98 378.74 -9.00 -41.98 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -6.55 Total: 17.49 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -3.67 Total: 4.61 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.06 Total: -58.83 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.17 Total: -25.31 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.98 -9.00 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.945 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds