Wall clock time and date at job start Tue Mar 31 2020 17:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.26924 * 2 1 4 4 C 1.54337 * 110.30316 * 237.92313 * 2 1 3 5 5 C 1.54603 * 102.27531 * 267.39229 * 4 2 1 6 6 H 1.08995 * 110.36942 * 214.67652 * 5 4 2 7 7 N 1.46509 * 110.30436 * 92.58089 * 5 4 2 8 8 C 1.34776 * 119.99680 * 157.78012 * 7 5 4 9 9 O 1.21586 * 120.00181 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.46494 * 120.00226 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47304 * 179.97438 * 11 10 8 13 13 O 1.21290 * 120.00292 * 0.02562 * 12 11 10 14 14 N 1.34786 * 119.99898 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99767 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00043 * 0.02562 * 15 14 12 17 17 C 1.38952 * 119.99973 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99979 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99708 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47054 * 90.00198 * 19 17 15 21 21 H 1.48500 * 109.46808 * 210.00213 * 19 17 15 22 22 H 1.48502 * 109.47318 * 329.99952 * 19 17 15 23 23 C 1.51369 * 105.18655 * 333.64614 * 5 4 2 24 24 C 1.38493 * 130.38930 * 197.18445 * 23 5 4 25 25 C 1.38103 * 120.21481 * 180.02562 * 24 23 5 26 26 C 1.38244 * 119.93599 * 359.97438 * 25 24 23 27 27 C 1.38105 * 119.93515 * 359.97438 * 26 25 24 28 28 C 1.38212 * 109.75634 * 17.20001 * 23 5 4 29 29 H 1.09001 * 109.47002 * 60.69928 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.70365 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.70194 * 1 2 3 32 32 H 1.09001 * 109.47070 * 59.29913 * 3 2 1 33 33 H 1.08998 * 109.47264 * 179.29363 * 3 2 1 34 34 H 1.09003 * 109.47093 * 299.29796 * 3 2 1 35 35 H 1.08998 * 110.82488 * 25.65057 * 4 2 1 36 36 H 1.09002 * 110.82428 * 149.19699 * 4 2 1 37 37 H 0.97003 * 119.99667 * 337.77584 * 7 5 4 38 38 H 0.97003 * 119.99593 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46991 * 299.99917 * 11 10 8 40 40 H 1.08998 * 109.47102 * 59.99900 * 11 10 8 41 41 H 0.96996 * 119.99837 * 359.97438 * 14 12 11 42 42 H 0.97000 * 119.99786 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.89362 * 0.04360 * 24 23 5 44 44 H 1.08004 * 120.03170 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.03330 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.89586 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0656 -0.7687 -1.2265 5 6 2.2441 -2.1985 -0.6661 6 1 3.1099 -2.6791 -1.1215 7 7 1.0372 -2.9933 -0.9070 8 6 1.1086 -4.3391 -0.9225 9 8 2.1745 -4.8935 -0.7360 10 7 -0.0017 -5.0703 -1.1436 11 6 0.0757 -6.5331 -1.1598 12 6 -1.2928 -7.1057 -1.4248 13 8 -2.2397 -6.3648 -1.5849 14 7 -1.4645 -8.4412 -1.4850 15 6 -2.7094 -8.9621 -1.7266 16 1 -3.5525 -8.3023 -1.8691 17 6 -2.8865 -10.3389 -1.7881 18 7 -4.0798 -10.8382 -2.0202 19 14 -1.4281 -11.4800 -1.5424 20 1 -1.2962 -11.8112 -0.1008 21 1 -1.6394 -12.7276 -2.3196 22 1 -0.1895 -10.8084 -2.0114 23 6 2.4655 -2.0170 0.8203 24 6 2.9846 -2.8884 1.7633 25 6 3.0933 -2.4992 3.0838 26 6 2.6832 -1.2357 3.4667 27 6 2.1663 -0.3649 2.5276 28 6 2.0552 -0.7539 1.2029 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.6938 1.9578 0.8836 33 1 3.1499 1.4201 0.0127 34 1 1.7142 1.9503 -0.8962 35 1 1.3387 -0.7572 -2.0387 36 1 3.0208 -0.3584 -1.5542 37 1 0.1867 -2.5509 -1.0553 38 1 -0.8523 -4.6279 -1.2912 39 1 0.7616 -6.8519 -1.9448 40 1 0.4373 -6.8886 -0.1949 41 1 -0.7071 -9.0337 -1.3581 42 1 -4.2033 -11.7993 -2.0635 43 1 3.3058 -3.8755 1.4648 44 1 3.4989 -3.1810 3.8167 45 1 2.7679 -0.9295 4.4989 46 1 1.8466 0.6222 2.8273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358278020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:14 Heat of formation + Delta-G solvation = -63.925480 kcal Electronic energy + Delta-G solvation = -27964.079072 eV Core-core repulsion = 24045.309373 eV Total energy + Delta-G solvation = -3918.769699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96656 -40.87707 -39.98911 -37.66206 -36.30000 -35.41789 -35.25737 -33.83846 -32.37415 -30.91119 -29.83592 -28.86105 -28.12785 -26.24206 -24.67329 -23.62255 -22.40943 -21.59899 -21.46127 -20.61068 -20.24375 -19.50604 -17.90628 -17.47125 -17.01339 -16.80354 -16.61819 -16.33424 -16.04480 -15.88123 -15.59818 -15.36868 -14.97320 -14.78521 -14.64043 -14.48439 -14.30158 -14.06737 -13.99225 -13.65301 -13.51249 -13.17718 -12.97384 -12.91981 -12.68726 -12.45181 -12.44415 -12.13158 -12.00676 -11.91576 -11.58750 -11.45604 -11.43707 -11.34597 -10.66022 -10.41814 -10.32390 -9.89840 -9.73582 -9.54271 -8.46087 -6.07945 0.36406 0.48267 1.30690 1.33592 1.43226 1.63596 1.78164 2.11886 2.19973 2.74906 2.89415 3.10205 3.32293 3.37096 3.49793 3.96454 3.98557 4.00872 4.11396 4.17996 4.25670 4.33066 4.39399 4.43594 4.55527 4.62578 4.68131 4.83138 4.85030 4.97009 5.00758 5.04039 5.09327 5.17079 5.26780 5.29286 5.31945 5.41976 5.48497 5.54572 5.59672 5.62590 5.75350 5.87657 5.94479 6.11079 6.48361 6.77525 7.00309 7.27999 7.52837 7.77476 8.70339 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.002403 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.264713 B =11647.741754 C =12199.485444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 C -0.134 4.134 4 C -0.112 4.112 5 C 0.200 3.800 6 H 0.079 0.921 7 N -0.721 5.721 8 C 0.706 3.294 9 O -0.623 6.623 10 N -0.728 5.728 11 C 0.139 3.861 12 C 0.446 3.554 13 O -0.614 6.614 14 N -0.578 5.578 15 C -0.331 4.331 16 H 0.064 0.936 17 C -0.008 4.008 18 N -0.926 5.926 19 Si 0.958 3.042 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.233 1.233 23 C -0.129 4.129 24 C -0.108 4.108 25 C -0.137 4.137 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.077 4.077 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.406 0.594 38 H 0.408 0.592 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.392 0.608 42 H 0.281 0.719 43 H 0.103 0.897 44 H 0.133 0.867 45 H 0.146 0.854 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.459 24.183 6.718 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 C -0.191 4.191 4 C -0.149 4.149 5 C 0.095 3.905 6 H 0.097 0.903 7 N -0.378 5.378 8 C 0.406 3.594 9 O -0.504 6.504 10 N -0.385 5.385 11 C 0.011 3.989 12 C 0.234 3.766 13 O -0.500 6.500 14 N -0.218 5.218 15 C -0.460 4.460 16 H 0.082 0.918 17 C -0.208 4.208 18 N -0.565 5.565 19 Si 0.778 3.222 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.156 1.156 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.155 4.155 26 C -0.134 4.134 27 C -0.133 4.133 28 C -0.078 4.078 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.244 0.756 38 H 0.246 0.754 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.228 0.772 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.151 0.849 45 H 0.164 0.836 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 17.633 23.979 6.715 30.512 hybrid contribution -0.551 -1.168 0.084 1.294 sum 17.083 22.810 6.799 29.298 Atomic orbital electron populations 1.21915 0.92773 1.01613 1.03281 1.20155 0.95982 0.95787 0.90499 1.21809 1.00983 0.93288 1.03002 1.22837 1.03979 0.90631 0.97483 1.20276 0.87091 0.92423 0.90687 0.90328 1.45149 1.12551 1.03246 1.76804 1.15952 0.83446 0.82364 0.77661 1.90865 1.28963 1.71717 1.58891 1.44722 1.10870 1.05848 1.77097 1.20668 0.93435 0.80448 1.04358 1.20494 0.91014 0.82567 0.82565 1.90520 1.44022 1.59218 1.56207 1.41922 1.09492 1.06027 1.64356 1.19027 0.86347 0.92094 1.48500 0.91816 1.26059 1.00658 0.98217 0.95855 1.69780 1.24213 1.14277 1.48265 0.85453 0.78542 0.78378 0.79814 1.18145 1.19764 1.15615 1.20983 1.00444 0.95261 0.96365 1.20852 0.99190 0.99009 0.93598 1.21290 1.01205 0.97571 0.95459 1.21377 0.98113 0.93386 1.00513 1.20883 1.00166 1.00650 0.91648 1.20761 0.97442 0.94608 0.94962 0.90146 0.93724 0.91991 0.91893 0.92466 0.90773 0.88035 0.87827 0.75647 0.75417 0.88036 0.88344 0.77244 0.90915 0.87923 0.84920 0.83610 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.44 71.98 0.61 -1.07 16 2 C -0.02 -0.31 0.88 -52.26 -0.05 -0.35 16 3 C -0.13 -1.21 8.30 71.98 0.60 -0.61 16 4 C -0.11 -1.45 5.70 31.59 0.18 -1.27 16 5 C 0.20 4.17 3.17 45.00 0.14 4.31 16 6 H 0.08 1.92 7.64 -2.39 -0.02 1.90 16 7 N -0.72 -16.56 5.01 -457.75 -2.29 -18.86 16 8 C 0.71 21.58 8.55 179.06 1.53 23.11 16 9 O -0.62 -22.62 15.85 -3.99 -0.06 -22.68 16 10 N -0.73 -23.03 5.53 -482.31 -2.67 -25.70 16 11 C 0.14 4.71 6.15 85.63 0.53 5.24 16 12 C 0.45 19.66 7.85 87.65 0.69 20.35 16 13 O -0.61 -31.77 15.24 -3.06 -0.05 -31.81 16 14 N -0.58 -26.81 5.09 -306.98 -1.56 -28.38 16 15 C -0.33 -18.86 10.16 84.04 0.85 -18.00 16 16 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 17 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 18 N -0.93 -54.54 13.96 21.66 0.30 -54.24 16 19 Si 0.96 38.38 27.74 68.60 1.90 40.28 16 20 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 23 C -0.13 -2.93 5.76 -19.60 -0.11 -3.04 16 24 C -0.11 -2.73 10.04 22.30 0.22 -2.50 16 25 C -0.14 -2.86 10.05 22.24 0.22 -2.63 16 26 C -0.12 -1.98 10.05 22.24 0.22 -1.75 16 27 C -0.12 -1.90 9.78 22.30 0.22 -1.68 16 28 C -0.08 -1.39 4.92 -19.59 -0.10 -1.48 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.66 6.35 -2.39 -0.02 0.65 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.52 8.00 -2.39 -0.02 0.50 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.10 1.05 7.81 -2.39 -0.02 1.04 16 36 H 0.10 1.09 7.92 -2.39 -0.02 1.07 16 37 H 0.41 7.63 6.91 -92.71 -0.64 6.99 16 38 H 0.41 12.86 7.45 -92.71 -0.69 12.17 16 39 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 40 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.39 15.32 5.76 -92.71 -0.53 14.78 16 42 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.10 2.99 7.87 -2.91 -0.02 2.97 16 44 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 45 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 46 H 0.14 1.61 7.92 -2.91 -0.02 1.58 16 Total: -1.00 -75.43 378.74 0.91 -74.52 By element: Atomic # 1 Polarization: 49.12 SS G_CDS: -0.89 Total: 48.22 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 6.23 Total: 18.64 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -6.22 Total: -127.17 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -0.11 Total: -54.50 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.28 kcal Total: -75.43 0.91 -74.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.598 kcal (2) G-P(sol) polarization free energy of solvation -75.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds