Wall clock time and date at job start Tue Mar 31 2020 17:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 115.55042 * 2 1 4 4 N 1.46496 * 109.47397 * 93.31063 * 3 2 1 5 5 C 1.34775 * 119.99666 * 188.36276 * 4 3 2 6 6 O 1.21582 * 120.00727 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99671 * 179.97438 * 5 4 3 8 8 C 1.46507 * 119.99933 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46935 * 180.02562 * 8 7 5 10 10 O 1.21292 * 120.00091 * 0.02562 * 9 8 7 11 11 N 1.34784 * 120.00023 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99898 * 179.97438 * 11 9 8 13 13 H 1.07996 * 120.00326 * 0.02562 * 12 11 9 14 14 C 1.38957 * 119.99624 * 179.97438 * 12 11 9 15 15 N 1.31413 * 119.99751 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99930 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46998 * 60.00462 * 16 14 12 18 18 H 1.48493 * 109.47077 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47242 * 300.00664 * 16 14 12 20 20 C 1.53004 * 117.49520 * 145.65933 * 2 1 3 21 21 C 1.53006 * 60.02938 * 107.50759 * 20 2 1 22 22 H 1.08993 * 117.50067 * 107.49950 * 21 20 2 23 23 C 1.50705 * 117.49585 * 252.52132 * 21 20 2 24 24 C 1.38228 * 120.00073 * 8.33651 * 23 21 20 25 25 C 1.38233 * 119.99837 * 179.78873 * 24 23 21 26 26 C 1.38237 * 119.99876 * 0.45528 * 25 24 23 27 27 C 1.38230 * 120.00172 * 359.77564 * 26 25 24 28 28 C 1.38231 * 119.99800 * 0.02562 * 27 26 25 29 29 H 1.08990 * 109.47391 * 310.11733 * 1 2 3 30 30 H 1.09004 * 109.46751 * 70.11389 * 1 2 3 31 31 H 1.08994 * 109.47293 * 190.10774 * 1 2 3 32 32 H 1.09006 * 109.47005 * 213.31571 * 3 2 1 33 33 H 1.09006 * 109.46678 * 333.30732 * 3 2 1 34 34 H 0.97002 * 120.00147 * 8.36122 * 4 3 2 35 35 H 0.96998 * 120.00539 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.46992 * 299.99962 * 8 7 5 37 37 H 1.08997 * 109.46987 * 60.00531 * 8 7 5 38 38 H 0.96998 * 119.99561 * 359.97438 * 11 9 8 39 39 H 0.96998 * 119.99162 * 179.97438 * 15 14 12 40 40 H 1.09002 * 117.49940 * 215.00391 * 20 2 1 41 41 H 1.09002 * 117.50310 * 0.02562 * 20 2 1 42 42 H 1.08003 * 119.99920 * 359.97438 * 24 23 21 43 43 H 1.08003 * 119.99881 * 180.25504 * 25 24 23 44 44 H 1.08001 * 120.00068 * 179.79099 * 26 25 24 45 45 H 1.08000 * 120.00264 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.00070 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.4725 1.7866 1.3788 5 6 2.8991 3.0384 1.6385 6 8 3.0499 3.8304 0.7285 7 7 3.1586 3.4123 2.9071 8 6 3.6229 4.7729 3.1894 9 6 3.8386 4.9325 4.6723 10 8 3.6260 4.0012 5.4198 11 7 4.2678 6.1101 5.1680 12 6 4.4636 6.2554 6.5171 13 1 4.2742 5.4263 7.1826 14 6 4.9066 7.4693 7.0280 15 7 5.1375 8.4781 6.2180 16 14 5.1726 7.6676 8.8662 17 1 6.1921 6.6910 9.3270 18 1 5.6429 9.0468 9.1523 19 1 3.8941 7.4228 9.5807 20 6 2.2364 -1.1207 0.7656 21 6 2.2372 -1.1219 -0.7644 22 1 3.1725 -0.8765 -1.2674 23 6 1.3730 -2.1421 -1.4599 24 6 0.4901 -2.9139 -0.7282 25 6 -0.3057 -3.8466 -1.3666 26 6 -0.2118 -4.0139 -2.7356 27 6 0.6746 -3.2454 -3.4667 28 6 1.4674 -2.3099 -2.8287 29 1 -0.3633 0.6621 0.7858 30 1 -0.3633 0.3496 -0.9664 31 1 -0.3633 -1.0116 0.1803 32 1 3.1214 1.3378 -0.5645 33 1 1.5182 2.1042 -0.4617 34 1 2.3526 1.1547 2.1049 35 1 3.0387 2.7804 3.6332 36 1 4.5612 4.9528 2.6646 37 1 2.8744 5.4896 2.8516 38 1 4.4382 6.8547 4.5701 39 1 5.4464 9.3255 6.5748 40 1 3.1713 -0.8745 1.2692 41 1 1.6111 -1.8581 1.2689 42 1 0.4198 -2.7861 0.3420 43 1 -0.9985 -4.4468 -0.7955 44 1 -0.8311 -4.7450 -3.2340 45 1 0.7483 -3.3765 -4.5362 46 1 2.1603 -1.7097 -3.3998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455011989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:00 Heat of formation + Delta-G solvation = -21.632845 kcal Electronic energy + Delta-G solvation = -26542.011217 eV Core-core repulsion = 22625.075464 eV Total energy + Delta-G solvation = -3916.935753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55630 -39.69153 -38.33276 -37.83473 -34.44900 -34.12581 -33.61049 -31.41769 -31.35558 -31.03805 -28.97958 -27.98676 -26.04955 -24.34241 -24.16256 -22.77351 -21.13552 -20.43551 -19.61934 -19.55398 -18.32764 -17.91242 -17.27658 -16.30981 -15.81420 -15.70893 -15.47421 -15.28921 -14.76014 -14.60628 -14.59785 -14.33261 -14.01166 -13.86466 -13.73042 -13.45826 -13.29079 -13.11560 -12.86149 -12.53558 -12.29624 -12.15913 -11.92809 -11.71431 -11.61922 -11.33929 -11.18376 -11.09561 -10.74605 -10.50099 -10.36370 -10.29980 -9.96360 -9.61474 -9.25522 -9.13471 -8.86427 -8.61048 -8.57035 -8.08675 -6.50126 -3.92189 0.94952 1.04639 2.74608 3.14510 3.22142 3.24259 3.27624 3.42936 3.66186 3.76798 4.07770 4.12550 4.33337 4.39977 4.51557 4.59780 4.62757 4.66356 4.74255 4.80808 4.92275 5.11519 5.18508 5.22357 5.30348 5.42461 5.47142 5.57659 5.62378 5.67268 5.69012 5.72258 5.79456 5.94257 5.96346 6.02857 6.10037 6.12982 6.16751 6.27874 6.52322 6.64057 6.77797 7.12753 7.46895 7.93493 8.26476 8.46709 8.82182 9.05794 9.40919 9.88952 10.66680 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.038599 B = 0.001619 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.233280 B =17286.893475 C =17708.627600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.125 4.125 3 C 0.177 3.823 4 N -0.746 5.746 5 C 0.704 3.296 6 O -0.599 6.599 7 N -0.725 5.725 8 C 0.129 3.871 9 C 0.429 3.571 10 O -0.598 6.598 11 N -0.549 5.549 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.165 4.165 21 C -0.103 4.103 22 H 0.116 0.884 23 C -0.045 4.045 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.113 4.113 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.397 0.603 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -22.151 -17.231 29.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.125 4.125 3 C 0.053 3.947 4 N -0.403 5.403 5 C 0.404 3.596 6 O -0.478 6.478 7 N -0.382 5.382 8 C 0.000 4.000 9 C 0.214 3.786 10 O -0.485 6.485 11 N -0.184 5.184 12 C -0.435 4.435 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.202 4.202 21 C -0.122 4.122 22 H 0.134 0.866 23 C -0.045 4.045 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.131 4.131 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.231 0.769 35 H 0.244 0.756 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.067 -21.779 -17.514 29.381 hybrid contribution 0.188 0.056 1.154 1.170 sum -8.878 -21.723 -16.360 28.607 Atomic orbital electron populations 1.21440 0.91303 1.02511 1.02395 1.21863 0.95550 0.90224 1.04893 1.20584 0.99361 0.92326 0.82439 1.45054 1.73364 1.12539 1.09331 1.15853 0.78361 0.82128 0.83291 1.90905 1.60193 1.52176 1.44537 1.44771 1.71467 1.15023 1.06941 1.20776 1.00674 0.83153 0.95358 1.19775 0.85284 0.84665 0.88853 1.90487 1.58047 1.40333 1.59641 1.41779 1.56734 1.11064 1.08803 1.19681 1.42410 0.98763 0.82692 0.87750 1.25321 0.96750 0.95005 1.00604 1.69611 1.44951 1.03157 1.35740 0.85869 0.78973 0.77307 0.81787 1.19808 1.20862 1.19811 1.23276 1.02962 1.00619 0.93345 1.21274 0.99639 0.97393 0.93858 0.86556 1.19090 0.96274 0.95743 0.93389 1.21097 0.96374 0.96153 1.00031 1.21138 0.99354 0.98378 0.94809 1.21153 0.99099 0.99867 0.94345 1.21139 0.96373 0.96226 0.99894 1.20995 0.99756 0.98505 0.93843 0.91722 0.91958 0.91691 0.91797 0.90572 0.76893 0.75633 0.90055 0.90038 0.77008 0.91554 0.87815 0.87995 0.85790 0.86121 0.86248 0.86087 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 8.94 37.16 0.33 -0.59 16 2 C -0.12 -0.98 2.33 -154.47 -0.36 -1.34 16 3 C 0.18 1.84 5.77 -4.04 -0.02 1.82 16 4 N -0.75 -8.85 5.46 -65.22 -0.36 -9.21 16 5 C 0.70 11.47 8.57 -86.92 -0.74 10.72 16 6 O -0.60 -11.83 16.30 5.29 0.09 -11.74 16 7 N -0.72 -12.24 5.53 -66.41 -0.37 -12.61 16 8 C 0.13 2.42 6.15 -5.19 -0.03 2.39 16 9 C 0.43 9.87 7.85 -10.98 -0.09 9.78 16 10 O -0.60 -15.29 15.24 5.55 0.08 -15.21 16 11 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 12 C -0.31 -8.33 9.68 -14.93 -0.14 -8.48 16 13 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 14 C 0.03 0.68 5.50 -17.46 -0.10 0.59 16 15 N -0.89 -23.90 13.05 55.50 0.72 -23.18 16 16 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 C -0.17 -1.15 8.51 -26.73 -0.23 -1.38 16 21 C -0.10 -0.76 5.69 -91.73 -0.52 -1.29 16 22 H 0.12 0.83 8.03 -51.93 -0.42 0.41 16 23 C -0.04 -0.35 5.04 -104.62 -0.53 -0.87 16 24 C -0.12 -0.86 7.46 -39.59 -0.30 -1.15 16 25 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 26 C -0.13 -0.84 10.05 -39.58 -0.40 -1.23 16 27 C -0.12 -0.80 10.05 -39.59 -0.40 -1.20 16 28 C -0.11 -0.84 9.74 -39.58 -0.39 -1.22 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 5.17 -51.93 -0.27 0.18 16 32 H 0.06 0.68 7.87 -51.93 -0.41 0.28 16 33 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 34 H 0.40 3.88 7.85 -40.82 -0.32 3.56 16 35 H 0.41 6.64 7.45 -40.82 -0.30 6.34 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.10 0.73 8.06 -51.93 -0.42 0.31 16 41 H 0.10 0.62 6.17 -51.93 -0.32 0.30 16 42 H 0.12 0.76 5.27 -52.48 -0.28 0.49 16 43 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 44 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -32.21 385.08 -9.77 -41.98 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -6.36 Total: 17.01 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -4.30 Total: 5.35 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.06 Total: -58.71 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: 0.17 Total: -26.95 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.21 -9.77 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455011989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.347 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds