Wall clock time and date at job start Tue Mar 31 2020 17:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 115.55042 * 2 1 4 4 N 1.46496 * 109.47397 * 93.31063 * 3 2 1 5 5 C 1.34775 * 119.99666 * 188.36276 * 4 3 2 6 6 O 1.21582 * 120.00727 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99671 * 179.97438 * 5 4 3 8 8 C 1.46507 * 119.99933 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46935 * 180.02562 * 8 7 5 10 10 O 1.21292 * 120.00091 * 0.02562 * 9 8 7 11 11 N 1.34784 * 120.00023 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99898 * 179.97438 * 11 9 8 13 13 H 1.07996 * 120.00326 * 0.02562 * 12 11 9 14 14 C 1.38957 * 119.99624 * 179.97438 * 12 11 9 15 15 N 1.31413 * 119.99751 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99930 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46998 * 60.00462 * 16 14 12 18 18 H 1.48493 * 109.47077 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47242 * 300.00664 * 16 14 12 20 20 C 1.53004 * 117.49520 * 145.65933 * 2 1 3 21 21 C 1.53006 * 60.02938 * 107.50759 * 20 2 1 22 22 H 1.08993 * 117.50067 * 107.49950 * 21 20 2 23 23 C 1.50705 * 117.49585 * 252.52132 * 21 20 2 24 24 C 1.38228 * 120.00073 * 8.33651 * 23 21 20 25 25 C 1.38233 * 119.99837 * 179.78873 * 24 23 21 26 26 C 1.38237 * 119.99876 * 0.45528 * 25 24 23 27 27 C 1.38230 * 120.00172 * 359.77564 * 26 25 24 28 28 C 1.38231 * 119.99800 * 0.02562 * 27 26 25 29 29 H 1.08990 * 109.47391 * 310.11733 * 1 2 3 30 30 H 1.09004 * 109.46751 * 70.11389 * 1 2 3 31 31 H 1.08994 * 109.47293 * 190.10774 * 1 2 3 32 32 H 1.09006 * 109.47005 * 213.31571 * 3 2 1 33 33 H 1.09006 * 109.46678 * 333.30732 * 3 2 1 34 34 H 0.97002 * 120.00147 * 8.36122 * 4 3 2 35 35 H 0.96998 * 120.00539 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.46992 * 299.99962 * 8 7 5 37 37 H 1.08997 * 109.46987 * 60.00531 * 8 7 5 38 38 H 0.96998 * 119.99561 * 359.97438 * 11 9 8 39 39 H 0.96998 * 119.99162 * 179.97438 * 15 14 12 40 40 H 1.09002 * 117.49940 * 215.00391 * 20 2 1 41 41 H 1.09002 * 117.50310 * 0.02562 * 20 2 1 42 42 H 1.08003 * 119.99920 * 359.97438 * 24 23 21 43 43 H 1.08003 * 119.99881 * 180.25504 * 25 24 23 44 44 H 1.08001 * 120.00068 * 179.79099 * 26 25 24 45 45 H 1.08000 * 120.00264 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.00070 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.4725 1.7866 1.3788 5 6 2.8991 3.0384 1.6385 6 8 3.0499 3.8304 0.7285 7 7 3.1586 3.4123 2.9071 8 6 3.6229 4.7729 3.1894 9 6 3.8386 4.9325 4.6723 10 8 3.6260 4.0012 5.4198 11 7 4.2678 6.1101 5.1680 12 6 4.4636 6.2554 6.5171 13 1 4.2742 5.4263 7.1826 14 6 4.9066 7.4693 7.0280 15 7 5.1375 8.4781 6.2180 16 14 5.1726 7.6676 8.8662 17 1 6.1921 6.6910 9.3270 18 1 5.6429 9.0468 9.1523 19 1 3.8941 7.4228 9.5807 20 6 2.2364 -1.1207 0.7656 21 6 2.2372 -1.1219 -0.7644 22 1 3.1725 -0.8765 -1.2674 23 6 1.3730 -2.1421 -1.4599 24 6 0.4901 -2.9139 -0.7282 25 6 -0.3057 -3.8466 -1.3666 26 6 -0.2118 -4.0139 -2.7356 27 6 0.6746 -3.2454 -3.4667 28 6 1.4674 -2.3099 -2.8287 29 1 -0.3633 0.6621 0.7858 30 1 -0.3633 0.3496 -0.9664 31 1 -0.3633 -1.0116 0.1803 32 1 3.1214 1.3378 -0.5645 33 1 1.5182 2.1042 -0.4617 34 1 2.3526 1.1547 2.1049 35 1 3.0387 2.7804 3.6332 36 1 4.5612 4.9528 2.6646 37 1 2.8744 5.4896 2.8516 38 1 4.4382 6.8547 4.5701 39 1 5.4464 9.3255 6.5748 40 1 3.1713 -0.8745 1.2692 41 1 1.6111 -1.8581 1.2689 42 1 0.4198 -2.7861 0.3420 43 1 -0.9985 -4.4468 -0.7955 44 1 -0.8311 -4.7450 -3.2340 45 1 0.7483 -3.3765 -4.5362 46 1 2.1603 -1.7097 -3.3998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455011989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:59 Heat of formation + Delta-G solvation = -42.445624 kcal Electronic energy + Delta-G solvation = -26542.913727 eV Core-core repulsion = 22625.075464 eV Total energy + Delta-G solvation = -3917.838263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40235 -40.78848 -39.98077 -38.61926 -36.23609 -35.25075 -35.21323 -33.35564 -31.92376 -31.62981 -29.71246 -29.30242 -27.30100 -26.00780 -24.75475 -23.28672 -22.13665 -21.37956 -21.25973 -20.41181 -20.07866 -19.33702 -17.80010 -17.47840 -17.40253 -16.94951 -16.49019 -16.30859 -16.11824 -15.91151 -15.72326 -15.41920 -15.15618 -15.04620 -14.88171 -14.23253 -14.04815 -13.95763 -13.85766 -13.66058 -13.52468 -13.40768 -13.11750 -12.89456 -12.83414 -12.45668 -12.37832 -12.12814 -11.84243 -11.76832 -11.54878 -11.51422 -11.30758 -10.85474 -10.54118 -10.42001 -10.08932 -9.79892 -9.75604 -9.39897 -8.49549 -5.99846 0.43021 0.54243 1.39270 1.43369 1.53271 1.60955 1.91379 2.13027 2.29555 2.62148 3.04819 3.11861 3.17686 3.35024 3.53089 3.74990 3.83314 3.95601 4.00910 4.18243 4.22422 4.24452 4.33204 4.44875 4.47618 4.61225 4.64880 4.69222 4.75986 4.83557 4.94659 4.99607 5.05305 5.11366 5.20864 5.21168 5.32328 5.33408 5.39757 5.48414 5.63287 5.67787 5.75620 5.92515 5.97432 6.15832 6.49557 7.04561 7.04702 7.44147 7.54667 7.95899 8.67059 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.038599 B = 0.001619 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.233280 B =17286.893475 C =17708.627600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.125 4.125 3 C 0.178 3.822 4 N -0.727 5.727 5 C 0.704 3.296 6 O -0.634 6.634 7 N -0.724 5.724 8 C 0.142 3.858 9 C 0.434 3.566 10 O -0.624 6.624 11 N -0.559 5.559 12 C -0.339 4.339 13 H 0.087 0.913 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.998 3.002 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.157 4.157 21 C -0.100 4.100 22 H 0.117 0.883 23 C -0.057 4.057 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.127 4.127 28 C -0.128 4.128 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.410 0.590 35 H 0.410 0.590 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 -23.375 -17.177 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.126 4.126 3 C 0.054 3.946 4 N -0.383 5.383 5 C 0.403 3.597 6 O -0.516 6.516 7 N -0.382 5.382 8 C 0.013 3.987 9 C 0.221 3.779 10 O -0.512 6.512 11 N -0.194 5.194 12 C -0.468 4.468 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.195 1.195 20 C -0.194 4.194 21 C -0.118 4.118 22 H 0.135 0.865 23 C -0.057 4.057 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.152 4.152 27 C -0.145 4.145 28 C -0.146 4.146 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.246 0.754 35 H 0.248 0.752 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.480 -23.044 -17.475 30.434 hybrid contribution 0.279 0.352 1.046 1.138 sum -9.201 -22.692 -16.429 29.487 Atomic orbital electron populations 1.21404 0.91038 1.02925 1.01909 1.21676 0.95543 0.89042 1.06333 1.20639 0.99230 0.93477 0.81251 1.44958 1.71704 1.11163 1.10518 1.15953 0.78246 0.83011 0.82441 1.90883 1.61783 1.53552 1.45356 1.44681 1.71716 1.14342 1.07422 1.20574 1.01543 0.84568 0.91981 1.20413 0.83457 0.83619 0.90442 1.90463 1.58668 1.41023 1.61010 1.41826 1.57504 1.11789 1.08325 1.19716 1.44419 0.99019 0.83674 0.89511 1.26128 0.95819 0.94270 1.04861 1.69680 1.44941 1.03510 1.37428 0.84919 0.78862 0.77653 0.76491 1.19498 1.19673 1.19513 1.23349 1.02905 0.99918 0.93205 1.21280 0.99489 0.96826 0.94243 0.86478 1.19178 0.96742 0.96135 0.93652 1.21262 0.96382 0.96261 1.00563 1.21419 0.99511 0.98411 0.95181 1.21453 0.99130 1.00070 0.94550 1.21403 0.96227 0.96027 1.00859 1.21202 1.00265 0.99014 0.94069 0.92222 0.92517 0.90728 0.91968 0.91859 0.75405 0.75202 0.89116 0.89140 0.76712 0.91090 0.87678 0.86786 0.84912 0.84509 0.84522 0.84593 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 8.94 71.98 0.64 -1.02 16 2 C -0.13 -1.84 2.33 -52.16 -0.12 -1.96 16 3 C 0.18 3.58 5.77 86.38 0.50 4.08 16 4 N -0.73 -16.50 5.46 -478.53 -2.61 -19.11 16 5 C 0.70 22.40 8.57 179.05 1.53 23.93 16 6 O -0.63 -24.78 16.30 -3.98 -0.06 -24.85 16 7 N -0.72 -23.90 5.53 -482.29 -2.67 -26.57 16 8 C 0.14 5.26 6.15 85.63 0.53 5.79 16 9 C 0.43 20.01 7.85 87.66 0.69 20.70 16 10 O -0.62 -31.98 15.24 -3.07 -0.05 -32.03 16 11 N -0.56 -28.09 5.29 -306.98 -1.62 -29.71 16 12 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 13 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 14 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 15 N -0.92 -48.64 13.05 21.67 0.28 -48.36 16 16 Si 1.00 41.63 29.55 68.60 2.03 43.66 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 C -0.16 -1.91 8.51 30.60 0.26 -1.65 16 21 C -0.10 -1.36 5.69 -11.51 -0.07 -1.43 16 22 H 0.12 1.56 8.03 -2.39 -0.02 1.54 16 23 C -0.06 -0.81 5.04 -19.87 -0.10 -0.91 16 24 C -0.13 -1.63 7.46 22.27 0.17 -1.47 16 25 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 26 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 27 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 28 C -0.13 -1.78 9.74 22.27 0.22 -1.56 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.92 5.17 -2.39 -0.01 0.91 16 32 H 0.06 1.30 7.87 -2.38 -0.02 1.28 16 33 H 0.06 1.47 7.95 -2.38 -0.02 1.45 16 34 H 0.41 7.37 7.85 -92.71 -0.73 6.65 16 35 H 0.41 13.06 7.45 -92.71 -0.69 12.37 16 36 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.40 19.31 7.90 -92.71 -0.73 18.57 16 39 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.10 1.28 8.06 -2.39 -0.02 1.26 16 41 H 0.11 1.13 6.17 -2.39 -0.01 1.12 16 42 H 0.13 1.37 5.27 -2.91 -0.02 1.36 16 43 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 45 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -68.06 385.08 0.38 -67.68 By element: Atomic # 1 Polarization: 47.76 SS G_CDS: -1.11 Total: 46.65 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 6.20 Total: 22.65 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -6.62 Total: -123.75 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -0.11 Total: -56.88 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -68.06 0.38 -67.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455011989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.232 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds