Wall clock time and date at job start Tue Mar 31 2020 17:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38281 * 120.38135 * 2 1 4 4 N 1.31867 * 120.93343 * 180.02562 * 3 2 1 5 5 C 1.31803 * 121.80029 * 359.77094 * 4 3 2 6 6 C 1.38903 * 120.65541 * 0.49622 * 5 4 3 7 7 N 1.39751 * 120.49388 * 179.77458 * 6 5 4 8 8 C 1.34775 * 120.00231 * 214.68832 * 7 6 5 9 9 O 1.21374 * 119.99979 * 355.55901 * 8 7 6 10 10 C 1.49357 * 120.00178 * 175.56165 * 8 7 6 11 11 O 1.21356 * 120.00045 * 6.13539 * 10 8 7 12 12 N 1.34781 * 119.99800 * 186.13309 * 10 8 7 13 13 C 1.46928 * 120.63118 * 354.75984 * 12 10 8 14 14 C 1.53620 * 108.53894 * 126.36780 * 13 12 10 15 15 C 1.53039 * 109.24413 * 54.85984 * 14 13 12 16 16 C 1.52997 * 109.46420 * 178.48963 * 15 14 13 17 17 C 1.50702 * 109.46928 * 295.06395 * 16 15 14 18 18 H 1.07997 * 120.00153 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00225 * 179.97438 * 17 16 15 20 20 N 1.31524 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47015 * 90.00171 * 21 19 17 23 23 H 1.48499 * 109.47540 * 210.00242 * 21 19 17 24 24 H 1.48502 * 109.47298 * 330.00159 * 21 19 17 25 25 C 1.53042 * 109.53711 * 298.51087 * 15 14 13 26 26 C 1.46923 * 120.62817 * 175.04384 * 12 10 8 27 27 C 1.38496 * 120.38003 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.46911 * 269.97760 * 1 2 3 29 29 H 1.08997 * 109.46746 * 29.98086 * 1 2 3 30 30 H 1.09000 * 109.47254 * 149.97716 * 1 2 3 31 31 H 1.08001 * 119.53497 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.67129 * 180.26275 * 5 4 3 33 33 H 0.97001 * 119.99786 * 34.95552 * 7 6 5 34 34 H 1.08998 * 109.58960 * 246.20395 * 13 12 10 35 35 H 1.08999 * 109.58666 * 6.63335 * 13 12 10 36 36 H 1.08997 * 109.63826 * 294.86423 * 14 13 12 37 37 H 1.09000 * 109.43226 * 174.72653 * 14 13 12 38 38 H 1.09004 * 109.44805 * 58.52011 * 15 14 13 39 39 H 1.09001 * 109.47196 * 55.06655 * 16 15 14 40 40 H 1.09002 * 109.47242 * 175.07238 * 16 15 14 41 41 H 0.96996 * 119.99348 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.49394 * 301.41056 * 25 15 14 43 43 H 1.09004 * 109.52669 * 181.33433 * 25 15 14 44 44 H 1.08996 * 109.58964 * 353.37095 * 26 12 10 45 45 H 1.09006 * 109.58804 * 113.65510 * 26 12 10 46 46 H 1.07994 * 120.81864 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1929 0.0000 4 7 3.5250 1.2056 -0.0005 5 6 4.2303 0.0922 0.0034 6 6 3.5999 -1.1455 -0.0020 7 7 4.3511 -2.3240 -0.0025 8 6 3.9064 -3.4064 -0.6712 9 8 2.8167 -3.3843 -1.2053 10 6 4.7544 -4.6330 -0.7549 11 8 5.7926 -4.6967 -0.1298 12 7 4.3665 -5.6691 -1.5247 13 6 3.0597 -5.6548 -2.1962 14 6 3.2777 -5.9136 -3.6946 15 6 4.0613 -7.2160 -3.8729 16 6 4.2486 -7.4981 -5.3649 17 6 2.9057 -7.7488 -6.0012 18 1 2.0084 -7.7103 -5.4015 19 6 2.8226 -8.0263 -7.3492 20 7 3.9154 -8.0727 -8.0796 21 14 1.1580 -8.3363 -8.1381 22 1 0.5920 -7.0510 -8.6209 23 1 1.3187 -9.2677 -9.2834 24 1 0.2398 -8.9365 -7.1371 25 6 5.4310 -7.0850 -3.2028 26 6 5.2398 -6.8370 -1.7033 27 6 2.2074 -1.1948 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6650 2.1274 0.0004 32 1 5.3091 0.1427 0.0072 33 1 5.1907 -2.3641 0.4816 34 1 2.4246 -6.4349 -1.7764 35 1 2.5879 -4.6822 -2.0568 36 1 3.8401 -5.0881 -4.1309 37 1 2.3117 -5.9993 -4.1921 38 1 3.5098 -8.0369 -3.4145 39 1 4.7215 -6.6389 -5.8406 40 1 4.8805 -8.3772 -5.4919 41 1 3.8568 -8.2683 -9.0279 42 1 5.9731 -6.2484 -3.6437 43 1 5.9981 -8.0042 -3.3502 44 1 6.2068 -6.6448 -1.2386 45 1 4.7800 -7.7111 -1.2419 46 1 1.6871 -2.1411 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565362038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:41 Heat of formation + Delta-G solvation = -25.457444 kcal Electronic energy + Delta-G solvation = -28054.082747 eV Core-core repulsion = 24136.981147 eV Total energy + Delta-G solvation = -3917.101600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61957 -40.40489 -38.89997 -37.62646 -35.81293 -34.02595 -33.90249 -32.16152 -30.89662 -30.72386 -28.26643 -27.70339 -26.03337 -24.46503 -23.58382 -22.91316 -22.23960 -21.33327 -20.54362 -19.25298 -18.06410 -17.55225 -17.32156 -16.67916 -16.52728 -16.27640 -16.08881 -15.37345 -14.70811 -14.61047 -14.40381 -14.21598 -13.91724 -13.68939 -13.64118 -13.30678 -13.15478 -13.00384 -12.92565 -12.81570 -12.43378 -12.22008 -11.87070 -11.37990 -11.34299 -11.20726 -11.02201 -10.79301 -10.74665 -10.51681 -10.19806 -10.00618 -9.80596 -9.65543 -9.43531 -9.03852 -8.87187 -8.75548 -8.54546 -8.35917 -6.01223 -4.03139 0.52198 0.90049 1.29637 1.99186 2.94046 3.24277 3.30442 3.37178 3.39637 3.44419 3.98886 4.17262 4.43489 4.44380 4.50206 4.67305 4.70348 5.05964 5.16247 5.24618 5.26070 5.34028 5.35015 5.39331 5.51970 5.55228 5.62776 5.69314 5.72071 5.86134 5.90025 5.96299 6.15123 6.26150 6.33016 6.39003 6.49144 6.54090 6.64713 6.92339 6.97902 7.09016 7.24460 7.44942 7.59925 7.64794 7.76467 7.79099 7.98288 8.40808 9.03272 9.60792 11.10104 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.002753 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.831192 B =10167.504052 C =11626.929980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.117 4.117 3 C 0.082 3.918 4 N -0.462 5.462 5 C 0.077 3.923 6 C 0.095 3.905 7 N -0.641 5.641 8 C 0.515 3.485 9 O -0.484 6.484 10 C 0.506 3.494 11 O -0.532 6.532 12 N -0.562 5.562 13 C 0.039 3.961 14 C -0.114 4.114 15 C -0.084 4.084 16 C 0.028 3.972 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.129 4.129 26 C 0.107 3.893 27 C -0.079 4.079 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.426 0.574 34 H 0.066 0.934 35 H 0.151 0.849 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 14.373 19.709 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.076 4.076 4 N -0.170 5.170 5 C -0.083 4.083 6 C -0.001 4.001 7 N -0.288 5.288 8 C 0.299 3.701 9 O -0.359 6.359 10 C 0.287 3.713 11 O -0.411 6.411 12 N -0.293 5.293 13 C -0.081 4.081 14 C -0.152 4.152 15 C -0.103 4.103 16 C -0.009 4.009 17 C -0.554 4.554 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.167 4.167 26 C -0.014 4.014 27 C -0.106 4.106 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.175 0.825 32 H 0.177 0.823 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.951 15.041 19.435 24.653 hybrid contribution -0.818 -1.233 -0.530 1.572 sum -2.769 13.808 18.905 23.574 Atomic orbital electron populations 1.20755 0.89703 1.03675 1.02762 1.20905 0.97950 0.93296 0.99806 1.22693 0.89796 0.97690 0.97383 1.67675 1.08367 1.29729 1.11188 1.22637 1.00551 0.85995 0.99078 1.18825 0.91858 0.86683 1.02743 1.43094 1.25669 1.09652 1.50353 1.20643 0.86801 0.84625 0.78048 1.90345 1.21258 1.80618 1.43645 1.19540 0.85948 0.84045 0.81729 1.90750 1.24489 1.81326 1.44514 1.48141 1.19687 1.16804 1.44683 1.23643 0.82462 1.07989 0.93989 1.21926 1.02366 0.98170 0.92764 1.21247 0.93016 0.96331 0.99682 1.19120 0.97028 0.96764 0.87997 1.21234 0.93137 1.47543 0.93510 0.92573 1.25025 0.96305 0.95608 0.97553 1.69967 1.27265 1.49583 1.06716 0.86639 0.84494 0.78091 0.79053 1.20700 1.21304 1.19884 1.22039 0.99736 1.02134 0.92773 1.21900 0.94715 0.86463 0.98330 1.21689 0.92197 0.99797 0.96953 0.90699 0.90868 0.90788 0.82512 0.82285 0.73529 0.91579 0.83326 0.92523 0.89632 0.92287 0.96671 0.96607 0.93048 0.91975 0.90725 0.89380 0.90945 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.04 36.01 0.36 -0.32 16 2 C -0.12 -1.01 5.89 -104.51 -0.62 -1.63 16 3 C 0.08 0.72 10.85 -17.52 -0.19 0.53 16 4 N -0.46 -4.78 10.35 -13.07 -0.14 -4.91 16 5 C 0.08 0.73 11.13 -17.32 -0.19 0.53 16 6 C 0.10 0.95 6.32 -83.59 -0.53 0.42 16 7 N -0.64 -6.26 5.34 -10.20 -0.05 -6.31 16 8 C 0.51 6.30 7.67 -11.63 -0.09 6.22 16 9 O -0.48 -6.52 10.49 5.48 0.06 -6.46 16 10 C 0.51 6.98 7.75 -11.63 -0.09 6.89 16 11 O -0.53 -7.92 15.92 5.49 0.09 -7.83 16 12 N -0.56 -8.09 2.97 -173.05 -0.51 -8.60 16 13 C 0.04 0.58 6.31 -3.49 -0.02 0.56 16 14 C -0.11 -2.04 5.21 -26.39 -0.14 -2.18 16 15 C -0.08 -1.62 2.10 -90.58 -0.19 -1.81 16 16 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 17 C -0.52 -14.03 8.39 -34.44 -0.29 -14.32 16 18 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.13 -2.09 5.36 -26.61 -0.14 -2.24 16 26 C 0.11 1.51 6.42 -3.71 -0.02 1.48 16 27 C -0.08 -0.80 8.49 -39.08 -0.33 -1.13 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.43 3.34 8.30 -40.82 -0.34 3.00 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.15 2.18 3.69 -57.22 -0.21 1.97 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.20 7.04 -51.93 -0.37 0.84 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.15 1.59 6.32 -52.49 -0.33 1.26 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -31.95 374.25 -8.51 -40.46 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.60 Total: 2.54 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.70 Total: -4.93 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.03 Total: -45.75 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.14 Total: -14.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.95 -8.51 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565362038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.998 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds