Wall clock time and date at job start Tue Mar 31 2020 17:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38281 * 120.38135 * 2 1 4 4 N 1.31867 * 120.93343 * 180.02562 * 3 2 1 5 5 C 1.31803 * 121.80029 * 359.77094 * 4 3 2 6 6 C 1.38903 * 120.65541 * 0.49622 * 5 4 3 7 7 N 1.39751 * 120.49388 * 179.77458 * 6 5 4 8 8 C 1.34775 * 120.00231 * 214.68832 * 7 6 5 9 9 O 1.21374 * 119.99979 * 355.55901 * 8 7 6 10 10 C 1.49357 * 120.00178 * 175.56165 * 8 7 6 11 11 O 1.21356 * 120.00045 * 6.13539 * 10 8 7 12 12 N 1.34781 * 119.99800 * 186.13309 * 10 8 7 13 13 C 1.46928 * 120.63118 * 354.75984 * 12 10 8 14 14 C 1.53620 * 108.53894 * 126.36780 * 13 12 10 15 15 C 1.53039 * 109.24413 * 54.85984 * 14 13 12 16 16 C 1.52997 * 109.46420 * 178.48963 * 15 14 13 17 17 C 1.50702 * 109.46928 * 295.06395 * 16 15 14 18 18 H 1.07997 * 120.00153 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00225 * 179.97438 * 17 16 15 20 20 N 1.31524 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47015 * 90.00171 * 21 19 17 23 23 H 1.48499 * 109.47540 * 210.00242 * 21 19 17 24 24 H 1.48502 * 109.47298 * 330.00159 * 21 19 17 25 25 C 1.53042 * 109.53711 * 298.51087 * 15 14 13 26 26 C 1.46923 * 120.62817 * 175.04384 * 12 10 8 27 27 C 1.38496 * 120.38003 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.46911 * 269.97760 * 1 2 3 29 29 H 1.08997 * 109.46746 * 29.98086 * 1 2 3 30 30 H 1.09000 * 109.47254 * 149.97716 * 1 2 3 31 31 H 1.08001 * 119.53497 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.67129 * 180.26275 * 5 4 3 33 33 H 0.97001 * 119.99786 * 34.95552 * 7 6 5 34 34 H 1.08998 * 109.58960 * 246.20395 * 13 12 10 35 35 H 1.08999 * 109.58666 * 6.63335 * 13 12 10 36 36 H 1.08997 * 109.63826 * 294.86423 * 14 13 12 37 37 H 1.09000 * 109.43226 * 174.72653 * 14 13 12 38 38 H 1.09004 * 109.44805 * 58.52011 * 15 14 13 39 39 H 1.09001 * 109.47196 * 55.06655 * 16 15 14 40 40 H 1.09002 * 109.47242 * 175.07238 * 16 15 14 41 41 H 0.96996 * 119.99348 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.49394 * 301.41056 * 25 15 14 43 43 H 1.09004 * 109.52669 * 181.33433 * 25 15 14 44 44 H 1.08996 * 109.58964 * 353.37095 * 26 12 10 45 45 H 1.09006 * 109.58804 * 113.65510 * 26 12 10 46 46 H 1.07994 * 120.81864 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1929 0.0000 4 7 3.5250 1.2056 -0.0005 5 6 4.2303 0.0922 0.0034 6 6 3.5999 -1.1455 -0.0020 7 7 4.3511 -2.3240 -0.0025 8 6 3.9064 -3.4064 -0.6712 9 8 2.8167 -3.3843 -1.2053 10 6 4.7544 -4.6330 -0.7549 11 8 5.7926 -4.6967 -0.1298 12 7 4.3665 -5.6691 -1.5247 13 6 3.0597 -5.6548 -2.1962 14 6 3.2777 -5.9136 -3.6946 15 6 4.0613 -7.2160 -3.8729 16 6 4.2486 -7.4981 -5.3649 17 6 2.9057 -7.7488 -6.0012 18 1 2.0084 -7.7103 -5.4015 19 6 2.8226 -8.0263 -7.3492 20 7 3.9154 -8.0727 -8.0796 21 14 1.1580 -8.3363 -8.1381 22 1 0.5920 -7.0510 -8.6209 23 1 1.3187 -9.2677 -9.2834 24 1 0.2398 -8.9365 -7.1371 25 6 5.4310 -7.0850 -3.2028 26 6 5.2398 -6.8370 -1.7033 27 6 2.2074 -1.1948 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6650 2.1274 0.0004 32 1 5.3091 0.1427 0.0072 33 1 5.1907 -2.3641 0.4816 34 1 2.4246 -6.4349 -1.7764 35 1 2.5879 -4.6822 -2.0568 36 1 3.8401 -5.0881 -4.1309 37 1 2.3117 -5.9993 -4.1921 38 1 3.5098 -8.0369 -3.4145 39 1 4.7215 -6.6389 -5.8406 40 1 4.8805 -8.3772 -5.4919 41 1 3.8568 -8.2683 -9.0279 42 1 5.9731 -6.2484 -3.6437 43 1 5.9981 -8.0042 -3.3502 44 1 6.2068 -6.6448 -1.2386 45 1 4.7800 -7.7111 -1.2419 46 1 1.6871 -2.1411 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565362038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:40 Heat of formation + Delta-G solvation = -45.495435 kcal Electronic energy + Delta-G solvation = -28054.951659 eV Core-core repulsion = 24136.981147 eV Total energy + Delta-G solvation = -3917.970513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55425 -41.28189 -39.91955 -38.90693 -36.76655 -35.60938 -34.57607 -33.99160 -32.10614 -31.58304 -29.97672 -28.28289 -27.32693 -25.80092 -24.65146 -24.19099 -23.32791 -22.45723 -21.70560 -20.61122 -19.10644 -18.53745 -18.35726 -18.03531 -17.50667 -17.50591 -17.11189 -16.55858 -16.37151 -15.63293 -15.51699 -15.16238 -15.13910 -14.97493 -14.51367 -14.49247 -14.35370 -14.09501 -13.98646 -13.66215 -13.52357 -13.39554 -13.01986 -12.86783 -12.75138 -12.60460 -12.49877 -12.32379 -12.16714 -12.06768 -11.78872 -11.44196 -11.24663 -10.87798 -10.69602 -10.54274 -10.40856 -10.00699 -9.81875 -9.47485 -8.17427 -6.26694 -0.29040 0.17745 0.39151 1.02974 1.40698 1.41168 1.51981 1.92084 2.25423 2.42048 2.73755 2.99808 3.16368 3.54278 3.78468 3.80619 3.90033 3.99320 4.02962 4.04197 4.09434 4.17711 4.38598 4.41596 4.55830 4.63172 4.66678 4.79946 4.83706 4.85710 4.90160 4.97302 5.03102 5.14922 5.19802 5.22454 5.29721 5.33570 5.38240 5.46351 5.55411 5.69736 5.77785 5.81956 5.88631 6.11164 6.28820 6.50281 6.70052 6.90011 6.90508 7.42007 8.94547 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.002753 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.831192 B =10167.504052 C =11626.929980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 C 0.079 3.921 4 N -0.483 5.483 5 C 0.075 3.925 6 C 0.081 3.919 7 N -0.624 5.624 8 C 0.517 3.483 9 O -0.499 6.499 10 C 0.509 3.491 11 O -0.542 6.542 12 N -0.568 5.568 13 C 0.053 3.947 14 C -0.108 4.108 15 C -0.076 4.076 16 C 0.033 3.967 17 C -0.527 4.527 18 H 0.065 0.935 19 C -0.003 4.003 20 N -0.937 5.937 21 Si 0.959 3.041 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.260 1.260 25 C -0.122 4.122 26 C 0.114 3.886 27 C -0.093 4.093 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.183 0.817 32 H 0.179 0.821 33 H 0.435 0.565 34 H 0.080 0.920 35 H 0.157 0.843 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.064 0.936 39 H -0.017 1.017 40 H -0.011 1.011 41 H 0.261 0.739 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 15.243 21.374 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.120 4.120 3 C -0.078 4.078 4 N -0.191 5.191 5 C -0.085 4.085 6 C -0.015 4.015 7 N -0.272 5.272 8 C 0.301 3.699 9 O -0.375 6.375 10 C 0.291 3.709 11 O -0.421 6.421 12 N -0.300 5.300 13 C -0.067 4.067 14 C -0.147 4.147 15 C -0.095 4.095 16 C -0.004 4.004 17 C -0.565 4.565 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.578 5.578 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.184 1.184 25 C -0.160 4.160 26 C -0.007 4.007 27 C -0.121 4.121 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.200 0.800 32 H 0.196 0.804 33 H 0.276 0.724 34 H 0.099 0.901 35 H 0.173 0.827 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.002 0.998 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.110 0.890 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.392 15.931 21.137 26.685 hybrid contribution -0.331 -1.430 -1.036 1.797 sum -3.723 14.501 20.101 25.064 Atomic orbital electron populations 1.20811 0.87892 1.04200 1.03803 1.21181 0.99291 0.92712 0.98865 1.23166 0.89550 0.98821 0.96266 1.67730 1.09259 1.30094 1.11975 1.22936 1.01545 0.85542 0.98433 1.18921 0.91994 0.86733 1.03805 1.42935 1.25807 1.09010 1.49432 1.20338 0.86456 0.84705 0.78449 1.90321 1.21726 1.80807 1.44635 1.19737 0.85827 0.84158 0.81199 1.90745 1.24934 1.81513 1.44860 1.48165 1.19596 1.17225 1.44994 1.23514 0.82900 1.08934 0.91383 1.21803 1.00899 0.96699 0.95265 1.21092 0.95216 0.97231 0.95949 1.19016 0.95473 0.94171 0.91765 1.21671 0.94252 1.46647 0.93956 0.91713 1.25959 1.00195 0.95499 0.98393 1.70110 1.29731 1.50930 1.07028 0.85530 0.79839 0.78089 0.78123 1.20074 1.21168 1.18434 1.21925 0.97666 1.02005 0.94417 1.21854 0.95463 0.87188 0.96224 1.21803 0.92491 1.00206 0.97550 0.89306 0.89290 0.91308 0.79990 0.80379 0.72441 0.90132 0.82736 0.94157 0.91139 0.91775 0.99831 0.99219 0.93032 0.93265 0.90135 0.88545 0.89027 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.04 71.24 0.71 -0.40 16 2 C -0.12 -1.85 5.89 -19.79 -0.12 -1.97 16 3 C 0.08 1.24 10.85 84.70 0.92 2.16 16 4 N -0.48 -9.26 10.35 -195.27 -2.02 -11.28 16 5 C 0.07 1.31 11.13 84.86 0.94 2.25 16 6 C 0.08 1.54 6.32 38.30 0.24 1.78 16 7 N -0.62 -11.45 5.34 -304.53 -1.62 -13.07 16 8 C 0.52 12.08 7.67 87.24 0.67 12.75 16 9 O -0.50 -12.97 10.49 -3.32 -0.03 -13.01 16 10 C 0.51 13.30 7.75 87.24 0.68 13.98 16 11 O -0.54 -15.22 15.92 -3.27 -0.05 -15.27 16 12 N -0.57 -15.54 2.97 -819.77 -2.43 -17.97 16 13 C 0.05 1.50 6.31 86.51 0.55 2.04 16 14 C -0.11 -3.89 5.21 30.82 0.16 -3.73 16 15 C -0.08 -2.96 2.10 -10.77 -0.02 -2.98 16 16 C 0.03 1.69 4.45 29.85 0.13 1.82 16 17 C -0.53 -29.12 8.39 25.60 0.21 -28.90 16 18 H 0.06 3.39 7.05 -2.91 -0.02 3.37 16 19 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 20 N -0.94 -57.21 13.29 21.45 0.28 -56.92 16 21 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 C -0.12 -3.94 5.36 30.67 0.16 -3.78 16 26 C 0.11 3.01 6.42 86.36 0.55 3.56 16 27 C -0.09 -1.79 8.49 22.60 0.19 -1.60 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.62 8.09 -2.39 -0.02 0.60 16 30 H 0.07 0.78 8.09 -2.39 -0.02 0.77 16 31 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.43 6.21 8.30 -92.71 -0.77 5.44 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.16 4.36 3.69 -86.19 -0.32 4.04 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 2.72 6.91 -2.39 -0.02 2.70 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.10 2.44 7.04 -2.39 -0.02 2.42 16 45 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 46 H 0.14 2.95 6.32 -2.91 -0.02 2.93 16 Total: -1.00 -69.42 374.25 2.53 -66.89 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.07 Total: 17.36 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 6.45 Total: -2.74 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -5.79 Total: -99.25 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.09 Total: -28.28 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.42 2.53 -66.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565362038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.395 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds