Wall clock time and date at job start Tue Mar 31 2020 16:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 119.53146 * 2 1 4 4 C 1.38487 * 119.24037 * 179.97438 * 3 2 1 5 5 C 1.39330 * 118.35730 * 0.02562 * 4 3 2 6 6 N 1.39753 * 120.49622 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00176 * 25.73365 * 6 5 4 8 8 O 1.21385 * 119.99761 * 5.69348 * 7 6 5 9 9 C 1.49353 * 120.00484 * 185.68636 * 7 6 5 10 10 O 1.21361 * 119.99430 * 6.14733 * 9 7 6 11 11 N 1.34775 * 120.00354 * 186.15546 * 9 7 6 12 12 C 1.46927 * 120.62626 * 354.76102 * 11 9 7 13 13 C 1.53626 * 108.54026 * 126.37310 * 12 11 9 14 14 C 1.53038 * 109.24426 * 54.85471 * 13 12 11 15 15 C 1.53000 * 109.46098 * 178.49107 * 14 13 12 16 16 C 1.50705 * 109.47143 * 295.06507 * 15 14 13 17 17 H 1.08007 * 119.99591 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99732 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99876 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46911 * 90.00569 * 20 18 16 22 22 H 1.48498 * 109.46981 * 210.00158 * 20 18 16 23 23 H 1.48492 * 109.47116 * 330.00435 * 20 18 16 24 24 C 1.53039 * 109.53525 * 298.50836 * 14 13 12 25 25 C 1.46927 * 120.63209 * 175.04421 * 11 9 7 26 26 C 1.38912 * 119.01285 * 359.97438 * 5 4 3 27 27 N 1.31799 * 120.65351 * 0.02562 * 26 5 4 28 28 H 1.09004 * 109.46946 * 89.99894 * 1 2 3 29 29 H 1.09004 * 109.47168 * 209.99945 * 1 2 3 30 30 H 1.08998 * 109.47226 * 329.99966 * 1 2 3 31 31 H 1.08000 * 120.37999 * 0.25333 * 3 2 1 32 32 H 1.08006 * 120.82432 * 179.97438 * 4 3 2 33 33 H 0.97009 * 120.00134 * 205.74495 * 6 5 4 34 34 H 1.09001 * 109.58485 * 246.20323 * 12 11 9 35 35 H 1.09000 * 109.59169 * 6.63034 * 12 11 9 36 36 H 1.08991 * 109.63527 * 294.85958 * 13 12 11 37 37 H 1.09008 * 109.42757 * 174.72262 * 13 12 11 38 38 H 1.09000 * 109.45083 * 58.52084 * 14 13 12 39 39 H 1.08993 * 109.47323 * 55.06497 * 15 14 13 40 40 H 1.08999 * 109.47570 * 175.06890 * 15 14 13 41 41 H 0.97001 * 120.00190 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.49945 * 301.41521 * 24 14 13 43 43 H 1.09006 * 109.52181 * 181.33313 * 24 14 13 44 44 H 1.09000 * 109.58400 * 353.36939 * 25 11 9 45 45 H 1.08993 * 109.58585 * 113.65318 * 25 11 9 46 46 H 1.08003 * 119.67270 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2032 0.0000 4 6 3.5735 1.1961 0.0005 5 6 4.2290 -0.0333 0.0005 6 7 5.6253 -0.0926 0.0005 7 6 6.3432 0.9293 0.5073 8 8 5.7794 1.8534 1.0566 9 6 7.8323 0.9247 0.3933 10 8 8.3888 0.0601 -0.2514 11 7 8.5581 1.8807 1.0063 12 6 7.8961 2.9976 1.6940 13 6 8.4281 3.0693 3.1334 14 6 9.9550 3.1671 3.1025 15 6 10.4879 3.2767 4.5325 16 6 10.0164 4.5697 5.1465 17 1 9.3982 5.2455 4.5741 18 6 10.3734 4.8895 6.4393 19 7 11.1258 4.0664 7.1364 20 14 9.7884 6.4919 7.2006 21 1 8.4859 6.2712 7.8789 22 1 10.7889 6.9634 8.1915 23 1 9.6253 7.5149 6.1366 24 6 10.5345 1.9167 2.4369 25 6 10.0264 1.8290 0.9944 26 6 3.4741 -1.1994 0.0005 27 7 2.1571 -1.1472 0.0000 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6472 2.1376 0.0041 32 1 4.1316 2.1208 0.0001 33 1 6.0778 -0.8692 -0.3644 34 1 8.1164 3.9294 1.1732 35 1 6.8190 2.8308 1.7089 36 1 8.1319 2.1731 3.6784 37 1 8.0171 3.9493 3.6284 38 1 10.2508 4.0501 2.5360 39 1 10.1188 2.4383 5.1230 40 1 11.5776 3.2582 4.5167 41 1 11.3773 4.2915 8.0458 42 1 10.2185 1.0314 2.9885 43 1 11.6230 1.9757 2.4363 44 1 10.3553 0.8908 0.5475 45 1 10.4168 2.6660 0.4156 46 1 3.9712 -2.1582 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568746835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:13 Heat of formation + Delta-G solvation = -23.161865 kcal Electronic energy + Delta-G solvation = -27886.052249 eV Core-core repulsion = 23969.050193 eV Total energy + Delta-G solvation = -3917.002056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64768 -40.41208 -38.94193 -37.63275 -35.92070 -34.01486 -32.65728 -32.16819 -32.08022 -30.79672 -28.40941 -27.76808 -25.63688 -24.16002 -23.92331 -23.00908 -22.37621 -21.32495 -20.51076 -19.28952 -18.26391 -17.65801 -16.87505 -16.66905 -16.38260 -16.26776 -15.93212 -15.36670 -14.87579 -14.62743 -14.49726 -14.31812 -14.20219 -13.69723 -13.63060 -13.36722 -13.08926 -12.88670 -12.81653 -12.57244 -12.48792 -12.27949 -11.87399 -11.38042 -11.31721 -11.21005 -11.02450 -10.79730 -10.74856 -10.51980 -10.20112 -10.03606 -9.98446 -9.74389 -9.43864 -9.04202 -8.87747 -8.61439 -8.52555 -8.36131 -6.01302 -4.03216 0.49201 0.92647 1.31950 1.97909 2.92135 3.23608 3.30393 3.37133 3.39628 3.45187 3.95460 4.04540 4.40764 4.44282 4.51778 4.62574 4.84049 5.13711 5.21548 5.25019 5.26735 5.33624 5.34112 5.38168 5.48233 5.54741 5.62361 5.68823 5.72539 5.82701 5.86017 5.95818 6.15416 6.26069 6.32680 6.38781 6.48659 6.53629 6.64807 6.92055 6.97633 7.08682 7.23871 7.43213 7.62165 7.64640 7.75593 7.78890 7.98093 8.40655 9.03119 9.60700 11.09982 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.002568 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.583834 B =10898.877186 C =12373.761944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.106 3.894 3 C -0.148 4.148 4 C -0.081 4.081 5 C 0.089 3.911 6 N -0.637 5.637 7 C 0.514 3.486 8 O -0.483 6.483 9 C 0.506 3.494 10 O -0.532 6.532 11 N -0.562 5.562 12 C 0.039 3.961 13 C -0.114 4.114 14 C -0.084 4.084 15 C 0.028 3.972 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.129 4.129 25 C 0.107 3.893 26 C 0.085 3.915 27 N -0.464 5.464 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.156 0.844 33 H 0.426 0.574 34 H 0.066 0.934 35 H 0.151 0.849 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.837 -8.257 -17.543 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.032 4.032 3 C -0.168 4.168 4 C -0.109 4.109 5 C -0.008 4.008 6 N -0.283 5.283 7 C 0.298 3.702 8 O -0.358 6.358 9 C 0.287 3.713 10 O -0.410 6.410 11 N -0.293 5.293 12 C -0.081 4.081 13 C -0.152 4.152 14 C -0.103 4.103 15 C -0.009 4.009 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.167 4.167 25 C -0.014 4.014 26 C -0.076 4.076 27 N -0.173 5.173 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.173 0.827 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.244 -8.810 -17.317 25.325 hybrid contribution 0.739 1.374 0.522 1.645 sum -15.505 -7.436 -16.795 24.037 Atomic orbital electron populations 1.20689 0.88598 1.03581 1.03034 1.21317 0.97237 0.88277 0.96357 1.21928 0.94044 0.99503 1.01307 1.21838 0.94593 0.98087 0.96369 1.18854 0.82969 0.95878 1.03081 1.43107 1.04227 1.22064 1.58902 1.20643 0.89270 0.82373 0.77913 1.90335 1.71505 1.33996 1.39917 1.19540 0.86904 0.83168 0.81703 1.90754 1.71905 1.37468 1.40912 1.48146 1.07520 1.23668 1.49981 1.23645 1.03200 0.87488 0.93749 1.21928 0.96741 1.03011 0.93537 1.21250 0.94161 0.95057 0.99841 1.19120 0.96059 0.96967 0.88770 1.21233 1.31493 1.04598 0.98095 0.92578 1.25023 0.95241 0.96828 0.97404 1.69959 1.36769 1.36415 1.10362 0.86640 0.78477 0.84016 0.79150 1.20700 1.21305 1.19894 1.22038 1.00772 1.00317 0.93546 1.21903 0.77558 1.03039 0.98916 1.22544 0.89402 0.96777 0.98838 1.67495 1.08491 1.29286 1.12071 0.90456 0.90474 0.90618 0.84198 0.82661 0.73559 0.91567 0.83340 0.92507 0.89619 0.92282 0.96669 0.96597 0.93049 0.91964 0.90719 0.89377 0.90947 0.82236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.17 36.01 0.37 -0.26 16 2 C 0.11 0.97 6.78 -82.56 -0.56 0.41 16 3 C -0.15 -1.29 9.73 -39.47 -0.38 -1.67 16 4 C -0.08 -0.83 8.81 -39.08 -0.34 -1.17 16 5 C 0.09 0.89 6.43 -83.59 -0.54 0.35 16 6 N -0.64 -6.22 5.35 -10.20 -0.05 -6.27 16 7 C 0.51 6.26 7.62 -11.63 -0.09 6.17 16 8 O -0.48 -6.45 10.28 5.47 0.06 -6.40 16 9 C 0.51 6.95 7.75 -11.63 -0.09 6.86 16 10 O -0.53 -7.91 15.94 5.49 0.09 -7.82 16 11 N -0.56 -8.06 2.97 -173.05 -0.51 -8.57 16 12 C 0.04 0.58 6.31 -3.48 -0.02 0.56 16 13 C -0.11 -2.03 5.21 -26.39 -0.14 -2.17 16 14 C -0.08 -1.62 2.10 -90.58 -0.19 -1.81 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 16 C -0.52 -14.01 8.39 -34.44 -0.29 -14.30 16 17 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 C -0.13 -2.09 5.36 -26.61 -0.14 -2.23 16 25 C 0.11 1.50 6.42 -3.71 -0.02 1.48 16 26 C 0.08 0.79 11.10 -17.32 -0.19 0.60 16 27 N -0.46 -4.83 10.26 -9.30 -0.10 -4.92 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.07 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.16 1.64 5.98 -52.48 -0.31 1.33 16 33 H 0.43 3.33 8.30 -40.82 -0.34 3.00 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.15 2.16 3.69 -57.22 -0.21 1.95 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.64 6.91 -51.92 -0.36 1.28 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.20 7.04 -51.93 -0.37 0.83 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -31.98 373.91 -8.61 -40.59 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.59 Total: 2.44 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.86 Total: -5.14 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.07 Total: -45.64 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.14 Total: -14.22 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.98 -8.61 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568746835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.429 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds