Wall clock time and date at job start Tue Mar 31 2020 16:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 119.53146 * 2 1 4 4 C 1.38487 * 119.24037 * 179.97438 * 3 2 1 5 5 C 1.39330 * 118.35730 * 0.02562 * 4 3 2 6 6 N 1.39753 * 120.49622 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00176 * 25.73365 * 6 5 4 8 8 O 1.21385 * 119.99761 * 5.69348 * 7 6 5 9 9 C 1.49353 * 120.00484 * 185.68636 * 7 6 5 10 10 O 1.21361 * 119.99430 * 6.14733 * 9 7 6 11 11 N 1.34775 * 120.00354 * 186.15546 * 9 7 6 12 12 C 1.46927 * 120.62626 * 354.76102 * 11 9 7 13 13 C 1.53626 * 108.54026 * 126.37310 * 12 11 9 14 14 C 1.53038 * 109.24426 * 54.85471 * 13 12 11 15 15 C 1.53000 * 109.46098 * 178.49107 * 14 13 12 16 16 C 1.50705 * 109.47143 * 295.06507 * 15 14 13 17 17 H 1.08007 * 119.99591 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99732 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99876 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46911 * 90.00569 * 20 18 16 22 22 H 1.48498 * 109.46981 * 210.00158 * 20 18 16 23 23 H 1.48492 * 109.47116 * 330.00435 * 20 18 16 24 24 C 1.53039 * 109.53525 * 298.50836 * 14 13 12 25 25 C 1.46927 * 120.63209 * 175.04421 * 11 9 7 26 26 C 1.38912 * 119.01285 * 359.97438 * 5 4 3 27 27 N 1.31799 * 120.65351 * 0.02562 * 26 5 4 28 28 H 1.09004 * 109.46946 * 89.99894 * 1 2 3 29 29 H 1.09004 * 109.47168 * 209.99945 * 1 2 3 30 30 H 1.08998 * 109.47226 * 329.99966 * 1 2 3 31 31 H 1.08000 * 120.37999 * 0.25333 * 3 2 1 32 32 H 1.08006 * 120.82432 * 179.97438 * 4 3 2 33 33 H 0.97009 * 120.00134 * 205.74495 * 6 5 4 34 34 H 1.09001 * 109.58485 * 246.20323 * 12 11 9 35 35 H 1.09000 * 109.59169 * 6.63034 * 12 11 9 36 36 H 1.08991 * 109.63527 * 294.85958 * 13 12 11 37 37 H 1.09008 * 109.42757 * 174.72262 * 13 12 11 38 38 H 1.09000 * 109.45083 * 58.52084 * 14 13 12 39 39 H 1.08993 * 109.47323 * 55.06497 * 15 14 13 40 40 H 1.08999 * 109.47570 * 175.06890 * 15 14 13 41 41 H 0.97001 * 120.00190 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.49945 * 301.41521 * 24 14 13 43 43 H 1.09006 * 109.52181 * 181.33313 * 24 14 13 44 44 H 1.09000 * 109.58400 * 353.36939 * 25 11 9 45 45 H 1.08993 * 109.58585 * 113.65318 * 25 11 9 46 46 H 1.08003 * 119.67270 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2032 0.0000 4 6 3.5735 1.1961 0.0005 5 6 4.2290 -0.0333 0.0005 6 7 5.6253 -0.0926 0.0005 7 6 6.3432 0.9293 0.5073 8 8 5.7794 1.8534 1.0566 9 6 7.8323 0.9247 0.3933 10 8 8.3888 0.0601 -0.2514 11 7 8.5581 1.8807 1.0063 12 6 7.8961 2.9976 1.6940 13 6 8.4281 3.0693 3.1334 14 6 9.9550 3.1671 3.1025 15 6 10.4879 3.2767 4.5325 16 6 10.0164 4.5697 5.1465 17 1 9.3982 5.2455 4.5741 18 6 10.3734 4.8895 6.4393 19 7 11.1258 4.0664 7.1364 20 14 9.7884 6.4919 7.2006 21 1 8.4859 6.2712 7.8789 22 1 10.7889 6.9634 8.1915 23 1 9.6253 7.5149 6.1366 24 6 10.5345 1.9167 2.4369 25 6 10.0264 1.8290 0.9944 26 6 3.4741 -1.1994 0.0005 27 7 2.1571 -1.1472 0.0000 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6472 2.1376 0.0041 32 1 4.1316 2.1208 0.0001 33 1 6.0778 -0.8692 -0.3644 34 1 8.1164 3.9294 1.1732 35 1 6.8190 2.8308 1.7089 36 1 8.1319 2.1731 3.6784 37 1 8.0171 3.9493 3.6284 38 1 10.2508 4.0501 2.5360 39 1 10.1188 2.4383 5.1230 40 1 11.5776 3.2582 4.5167 41 1 11.3773 4.2915 8.0458 42 1 10.2185 1.0314 2.9885 43 1 11.6230 1.9757 2.4363 44 1 10.3553 0.8908 0.5475 45 1 10.4168 2.6660 0.4156 46 1 3.9712 -2.1582 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568746835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:12 Heat of formation + Delta-G solvation = -43.274327 kcal Electronic energy + Delta-G solvation = -27886.924391 eV Core-core repulsion = 23969.050193 eV Total energy + Delta-G solvation = -3917.874198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57579 -41.28342 -39.95251 -38.90709 -36.85207 -35.62725 -34.00134 -33.33007 -32.78139 -32.08493 -30.01417 -28.62375 -26.96306 -25.40902 -24.79687 -24.28076 -23.51724 -22.53260 -21.62441 -20.62831 -19.27021 -18.59250 -18.40934 -17.84339 -17.46020 -17.28895 -16.88755 -16.55405 -16.27775 -15.73684 -15.54173 -15.29280 -15.15609 -15.03415 -14.82950 -14.50135 -14.33234 -14.13730 -13.99647 -13.51908 -13.43888 -13.08907 -13.01780 -12.97668 -12.76055 -12.59536 -12.49557 -12.32303 -12.10299 -12.07540 -11.78733 -11.44091 -11.24625 -10.87596 -10.74946 -10.66574 -10.52933 -10.01178 -9.81929 -9.31263 -8.17228 -6.26416 -0.32926 0.20938 0.42617 1.02251 1.40725 1.41163 1.51963 1.91064 2.25349 2.42070 2.74504 2.98549 3.16517 3.41898 3.75855 3.81596 3.90903 3.96505 4.01080 4.04542 4.17073 4.17979 4.39617 4.49964 4.62896 4.63470 4.70798 4.81303 4.84252 4.85180 4.89198 4.96841 5.03447 5.09222 5.18699 5.21341 5.28372 5.32723 5.38072 5.46855 5.55666 5.70218 5.78346 5.82583 5.88816 6.11346 6.28994 6.49538 6.69457 6.90175 6.93222 7.42179 8.94652 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.002568 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.583834 B =10898.877186 C =12373.761944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.099 3.901 3 C -0.149 4.149 4 C -0.094 4.094 5 C 0.074 3.926 6 N -0.621 5.621 7 C 0.516 3.484 8 O -0.497 6.497 9 C 0.508 3.492 10 O -0.542 6.542 11 N -0.568 5.568 12 C 0.053 3.947 13 C -0.108 4.108 14 C -0.077 4.077 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.065 0.935 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.959 3.041 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.261 1.261 24 C -0.122 4.122 25 C 0.114 3.886 26 C 0.085 3.915 27 N -0.486 5.486 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.435 0.565 34 H 0.080 0.920 35 H 0.157 0.843 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.064 0.936 39 H -0.016 1.016 40 H -0.010 1.010 41 H 0.261 0.739 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.553 -7.616 -19.096 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.039 4.039 3 C -0.169 4.169 4 C -0.121 4.121 5 C -0.023 4.023 6 N -0.268 5.268 7 C 0.300 3.700 8 O -0.373 6.373 9 C 0.290 3.710 10 O -0.421 6.421 11 N -0.300 5.300 12 C -0.067 4.067 13 C -0.147 4.147 14 C -0.096 4.096 15 C -0.004 4.004 16 C -0.565 4.565 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.185 1.185 24 C -0.160 4.160 25 C -0.007 4.007 26 C -0.075 4.075 27 N -0.196 5.196 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.182 0.818 32 H 0.167 0.833 33 H 0.275 0.725 34 H 0.099 0.901 35 H 0.173 0.827 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.002 0.998 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.109 0.891 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.978 -8.193 -18.903 27.343 hybrid contribution 1.231 1.100 0.997 1.928 sum -16.747 -7.093 -17.906 25.523 Atomic orbital electron populations 1.20779 0.86601 1.04320 1.04058 1.21849 0.98703 0.88092 0.95256 1.22195 0.93593 1.00517 1.00570 1.21951 0.95416 0.97975 0.96778 1.18947 0.82764 0.96282 1.04266 1.42948 1.04278 1.21614 1.57923 1.20327 0.88563 0.82856 0.78277 1.90310 1.71349 1.34746 1.40927 1.19740 0.87574 0.82513 0.81136 1.90748 1.72388 1.37636 1.41295 1.48169 1.07699 1.23842 1.50265 1.23520 1.03412 0.88323 0.91478 1.21803 0.95579 1.01504 0.95770 1.21098 0.95190 0.96850 0.96417 1.19017 0.94364 0.95083 0.91979 1.21667 1.31032 1.05361 0.98427 0.91734 1.25956 0.95437 1.00504 0.98177 1.70102 1.38316 1.38566 1.10752 0.85532 0.77919 0.79774 0.78365 1.20078 1.21173 1.18477 1.21923 1.01090 0.98061 0.94928 1.21854 0.77507 1.04322 0.97056 1.22891 0.89281 0.97490 0.97868 1.67572 1.08944 1.30104 1.12978 0.89177 0.90795 0.88827 0.81834 0.83261 0.72480 0.90148 0.82701 0.94085 0.91136 0.91799 0.99800 0.99203 0.93041 0.93206 0.90147 0.88546 0.89072 0.80097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.17 71.24 0.72 -0.29 16 2 C 0.10 1.63 6.78 42.57 0.29 1.92 16 3 C -0.15 -2.33 9.73 22.34 0.22 -2.12 16 4 C -0.09 -1.79 8.81 22.59 0.20 -1.60 16 5 C 0.07 1.38 6.43 38.30 0.25 1.63 16 6 N -0.62 -11.32 5.35 -304.52 -1.63 -12.95 16 7 C 0.52 11.95 7.62 87.24 0.66 12.61 16 8 O -0.50 -12.76 10.28 -3.36 -0.03 -12.79 16 9 C 0.51 13.22 7.75 87.24 0.68 13.89 16 10 O -0.54 -15.20 15.94 -3.28 -0.05 -15.25 16 11 N -0.57 -15.45 2.97 -819.75 -2.43 -17.88 16 12 C 0.05 1.48 6.31 86.51 0.55 2.03 16 13 C -0.11 -3.87 5.21 30.82 0.16 -3.71 16 14 C -0.08 -2.97 2.10 -10.77 -0.02 -3.00 16 15 C 0.03 1.68 4.45 29.85 0.13 1.81 16 16 C -0.53 -29.05 8.39 25.60 0.21 -28.84 16 17 H 0.06 3.38 7.06 -2.91 -0.02 3.35 16 18 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 19 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16 20 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 24 C -0.12 -3.92 5.36 30.67 0.16 -3.76 16 25 C 0.11 3.00 6.42 86.36 0.55 3.55 16 26 C 0.08 1.46 11.10 84.86 0.94 2.40 16 27 N -0.49 -9.45 10.26 -183.32 -1.88 -11.34 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 31 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.15 3.03 5.98 -2.91 -0.02 3.01 16 33 H 0.43 6.16 8.30 -92.70 -0.77 5.39 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.16 4.32 3.69 -86.20 -0.32 4.00 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 2.71 6.91 -2.38 -0.02 2.69 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.95 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 44 H 0.10 2.43 7.04 -2.39 -0.02 2.41 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -69.49 373.91 2.38 -67.11 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.07 Total: 17.08 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 6.17 Total: -3.21 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -5.66 Total: -98.96 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.09 Total: -28.04 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.49 2.38 -67.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568746835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.833 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds