Wall clock time and date at job start Tue Mar 31 2020 16:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38140 * 119.57551 * 2 1 4 4 C 1.38795 * 119.31614 * 179.97438 * 3 2 1 5 5 C 1.38404 * 118.49244 * 0.24821 * 4 3 2 6 6 C 1.39037 * 119.09910 * 359.53298 * 5 4 3 7 7 N 1.39253 * 119.69945 * 180.23089 * 6 5 4 8 8 C 1.34771 * 120.00438 * 175.50247 * 7 6 5 9 9 O 1.21362 * 119.99665 * 4.51937 * 8 7 6 10 10 C 1.49364 * 120.00186 * 184.52094 * 8 7 6 11 11 O 1.21360 * 119.99978 * 353.76341 * 10 8 7 12 12 N 1.34781 * 119.99996 * 173.76603 * 10 8 7 13 13 C 1.46922 * 120.63092 * 354.15882 * 12 10 8 14 14 C 1.53620 * 108.54344 * 126.36995 * 13 12 10 15 15 C 1.53032 * 109.24408 * 54.85543 * 14 13 12 16 16 C 1.53001 * 109.46388 * 178.49201 * 15 14 13 17 17 C 1.50704 * 109.47058 * 295.06886 * 16 15 14 18 18 H 1.08003 * 119.99538 * 359.97438 * 17 16 15 19 19 C 1.37867 * 120.00273 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99879 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00333 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47037 * 89.99653 * 21 19 17 23 23 H 1.48499 * 109.46971 * 209.99985 * 21 19 17 24 24 H 1.48500 * 109.46488 * 329.99649 * 21 19 17 25 25 C 1.53039 * 109.53860 * 298.51154 * 15 14 13 26 26 C 1.46925 * 120.62795 * 174.43672 * 12 10 8 27 27 N 1.31886 * 119.56870 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46944 * 89.99814 * 1 2 3 29 29 H 1.08998 * 109.47794 * 210.00063 * 1 2 3 30 30 H 1.08997 * 109.47167 * 330.00624 * 1 2 3 31 31 H 1.08001 * 120.34113 * 359.97345 * 3 2 1 32 32 H 1.07997 * 120.75204 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.44718 * 179.75107 * 5 4 3 34 34 H 0.97007 * 119.99411 * 355.49480 * 7 6 5 35 35 H 1.08998 * 109.58349 * 246.20155 * 13 12 10 36 36 H 1.09001 * 109.58512 * 6.62353 * 13 12 10 37 37 H 1.09006 * 109.63210 * 294.86156 * 14 13 12 38 38 H 1.09000 * 109.43133 * 174.72294 * 14 13 12 39 39 H 1.08999 * 109.45115 * 58.52121 * 15 14 13 40 40 H 1.09006 * 109.46958 * 55.06380 * 16 15 14 41 41 H 1.08996 * 109.47930 * 175.06894 * 16 15 14 42 42 H 0.97008 * 120.00158 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.49490 * 301.41361 * 25 15 14 44 44 H 1.08999 * 109.52542 * 181.33531 * 25 15 14 45 45 H 1.08999 * 109.58933 * 353.37307 * 26 12 10 46 46 H 1.09002 * 109.58585 * 113.65343 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2014 0.0000 4 6 3.5768 1.1951 0.0005 5 6 4.2315 -0.0242 -0.0042 6 6 3.4811 -1.1947 0.0006 7 7 4.1270 -2.4284 0.0008 8 6 3.4091 -3.5649 0.0969 9 8 2.1964 -3.5181 0.1006 10 6 4.1060 -4.8821 0.1989 11 8 5.3124 -4.9409 0.0816 12 7 3.3949 -6.0053 0.4210 13 6 1.9525 -5.9368 0.6919 14 6 1.2255 -6.8623 -0.2955 15 6 1.8171 -8.2702 -0.1961 16 6 1.0714 -9.2051 -1.1505 17 6 -0.3614 -9.3406 -0.7036 18 1 -0.7056 -8.8130 0.1737 19 6 -1.2328 -10.1380 -1.4146 20 7 -0.8138 -10.7800 -2.4831 21 14 -3.0091 -10.3054 -0.8610 22 1 -3.8316 -9.2541 -1.5118 23 1 -3.5231 -11.6446 -1.2451 24 1 -3.0845 -10.1506 0.6140 25 6 3.2992 -8.2305 -0.5756 26 6 4.0486 -7.3209 0.4030 27 7 2.1578 -1.1471 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6475 2.1359 -0.0004 32 1 4.1332 2.1207 0.0001 33 1 5.3107 -0.0660 -0.0080 34 1 5.0937 -2.4696 -0.0684 35 1 1.7567 -6.2620 1.7136 36 1 1.6040 -4.9126 0.5591 37 1 1.3510 -6.4858 -1.3107 38 1 0.1646 -6.8953 -0.0477 39 1 1.7136 -8.6361 0.8254 40 1 1.0999 -8.7927 -2.1592 41 1 1.5479 -10.1854 -1.1452 42 1 -1.4271 -11.3408 -2.9836 43 1 3.4051 -7.8411 -1.5882 44 1 3.7145 -9.2371 -0.5277 45 1 5.0836 -7.2103 0.0796 46 1 4.0226 -7.7556 1.4023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573605586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:17 Heat of formation + Delta-G solvation = -12.961713 kcal Electronic energy + Delta-G solvation = -28127.540169 eV Core-core repulsion = 24210.980425 eV Total energy + Delta-G solvation = -3916.559745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44036 -40.32776 -38.66023 -37.52284 -35.64733 -33.93637 -33.11984 -32.10402 -31.57335 -30.70762 -28.28628 -27.85250 -25.93069 -24.32683 -23.15079 -22.71512 -22.55847 -21.33774 -20.32237 -19.09641 -18.03758 -17.65004 -16.70871 -16.43270 -16.22994 -16.09467 -15.99599 -15.18056 -15.00407 -14.56199 -14.39134 -14.23069 -13.90620 -13.61229 -13.43050 -13.29906 -13.02860 -12.82308 -12.67150 -12.49676 -12.37829 -12.19435 -11.81287 -11.31837 -11.15815 -11.02858 -10.95463 -10.71706 -10.68774 -10.45642 -10.12775 -10.03438 -9.90423 -9.62505 -9.34670 -8.96742 -8.71776 -8.58762 -8.46066 -8.31590 -5.97086 -3.98715 0.63463 0.97780 1.50092 2.05351 3.07807 3.24141 3.33860 3.40219 3.43111 3.58592 3.95350 4.26887 4.41663 4.48226 4.66108 4.75063 4.86891 5.22640 5.24643 5.32156 5.38283 5.40318 5.42769 5.45432 5.60342 5.63488 5.68971 5.72186 5.86060 5.88288 5.93783 6.03194 6.20603 6.32637 6.39819 6.44425 6.56471 6.65263 6.69782 6.99410 7.05812 7.15421 7.32836 7.54102 7.69506 7.84165 7.85623 7.93644 8.02702 8.45543 9.07672 9.65016 11.14257 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.002802 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.432572 B = 9991.508015 C =11700.602841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.163 3.837 3 C -0.205 4.205 4 C -0.045 4.045 5 C -0.211 4.211 6 C 0.364 3.636 7 N -0.638 5.638 8 C 0.503 3.497 9 O -0.430 6.430 10 C 0.506 3.494 11 O -0.536 6.536 12 N -0.563 5.563 13 C 0.042 3.958 14 C -0.111 4.111 15 C -0.084 4.084 16 C 0.028 3.972 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.129 4.129 26 C 0.108 3.892 27 N -0.477 5.477 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.429 0.571 35 H 0.063 0.937 36 H 0.149 0.851 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.558 24.145 6.491 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.226 4.226 4 C -0.071 4.071 5 C -0.234 4.234 6 C 0.133 3.867 7 N -0.286 5.286 8 C 0.285 3.715 9 O -0.298 6.298 10 C 0.287 3.713 11 O -0.415 6.415 12 N -0.295 5.295 13 C -0.078 4.078 14 C -0.149 4.149 15 C -0.103 4.103 16 C -0.009 4.009 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.167 4.167 26 C -0.014 4.014 27 N -0.192 5.192 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.268 0.732 35 H 0.081 0.919 36 H 0.165 0.835 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.781 23.091 6.319 25.860 hybrid contribution 0.023 0.382 0.124 0.402 sum 9.804 23.472 6.443 26.240 Atomic orbital electron populations 1.20760 0.88364 1.03742 1.03462 1.21236 0.97126 0.87215 0.92019 1.21906 0.94906 0.99312 1.06449 1.21344 0.94309 0.97519 0.93890 1.21452 1.01055 0.91613 1.09275 1.18385 0.89172 0.84771 0.94358 1.43288 1.11839 1.02990 1.70503 1.20617 0.87754 0.85337 0.77796 1.90478 1.12812 1.84299 1.42239 1.19707 0.87010 0.85060 0.79491 1.90729 1.13342 1.86435 1.50992 1.48121 1.10906 1.05348 1.65108 1.23568 0.77341 1.07479 0.99444 1.21885 1.00503 0.94285 0.98263 1.21249 0.92183 0.95989 1.00869 1.19121 0.94379 0.93501 0.93905 1.21241 0.95137 1.27492 1.11413 0.92561 1.25019 0.98604 0.95797 0.95081 1.69966 1.35308 1.30662 1.17663 0.86642 0.85368 0.77310 0.78980 1.20691 1.21345 1.19891 1.22035 0.97405 0.98695 0.98525 1.21880 0.97497 0.81359 1.00622 1.67465 1.06792 1.29475 1.15512 0.90075 0.89879 0.90619 0.84669 0.84346 0.84441 0.73242 0.91869 0.83526 0.92409 0.89681 0.92342 0.96651 0.96639 0.93091 0.91983 0.90799 0.89452 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.17 36.01 0.37 -0.51 16 2 C 0.16 1.69 6.78 -82.60 -0.56 1.13 16 3 C -0.20 -1.58 9.73 -39.41 -0.38 -1.96 16 4 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 5 C -0.21 -1.70 9.94 -39.22 -0.39 -2.09 16 6 C 0.36 4.16 7.42 -154.80 -1.15 3.02 16 7 N -0.64 -7.23 5.38 -11.86 -0.06 -7.30 16 8 C 0.50 7.13 7.74 -11.63 -0.09 7.04 16 9 O -0.43 -6.97 11.34 5.49 0.06 -6.91 16 10 C 0.51 7.61 7.75 -11.62 -0.09 7.52 16 11 O -0.54 -8.49 15.93 5.49 0.09 -8.40 16 12 N -0.56 -8.73 2.97 -173.05 -0.51 -9.24 16 13 C 0.04 0.67 6.31 -3.49 -0.02 0.65 16 14 C -0.11 -2.10 5.21 -26.39 -0.14 -2.24 16 15 C -0.08 -1.68 2.10 -90.58 -0.19 -1.87 16 16 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 17 C -0.51 -14.25 8.39 -34.44 -0.29 -14.54 16 18 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 25 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 26 C 0.11 1.60 6.41 -3.71 -0.02 1.58 16 27 N -0.48 -6.30 7.79 -8.62 -0.07 -6.36 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.01 16 31 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.43 3.76 8.18 -40.82 -0.33 3.43 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.15 2.40 3.74 -56.93 -0.21 2.19 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.71 6.91 -51.93 -0.36 1.35 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.26 7.04 -51.93 -0.37 0.89 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -33.65 375.83 -9.53 -43.17 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.69 Total: 2.20 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.72 Total: -3.23 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.09 Total: -49.16 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.15 Total: -15.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.65 -9.53 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573605586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.213 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds