Wall clock time and date at job start Tue Mar 31 2020 16:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38140 * 119.57551 * 2 1 4 4 C 1.38795 * 119.31614 * 179.97438 * 3 2 1 5 5 C 1.38404 * 118.49244 * 0.24821 * 4 3 2 6 6 C 1.39037 * 119.09910 * 359.53298 * 5 4 3 7 7 N 1.39253 * 119.69945 * 180.23089 * 6 5 4 8 8 C 1.34771 * 120.00438 * 175.50247 * 7 6 5 9 9 O 1.21362 * 119.99665 * 4.51937 * 8 7 6 10 10 C 1.49364 * 120.00186 * 184.52094 * 8 7 6 11 11 O 1.21360 * 119.99978 * 353.76341 * 10 8 7 12 12 N 1.34781 * 119.99996 * 173.76603 * 10 8 7 13 13 C 1.46922 * 120.63092 * 354.15882 * 12 10 8 14 14 C 1.53620 * 108.54344 * 126.36995 * 13 12 10 15 15 C 1.53032 * 109.24408 * 54.85543 * 14 13 12 16 16 C 1.53001 * 109.46388 * 178.49201 * 15 14 13 17 17 C 1.50704 * 109.47058 * 295.06886 * 16 15 14 18 18 H 1.08003 * 119.99538 * 359.97438 * 17 16 15 19 19 C 1.37867 * 120.00273 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99879 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00333 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47037 * 89.99653 * 21 19 17 23 23 H 1.48499 * 109.46971 * 209.99985 * 21 19 17 24 24 H 1.48500 * 109.46488 * 329.99649 * 21 19 17 25 25 C 1.53039 * 109.53860 * 298.51154 * 15 14 13 26 26 C 1.46925 * 120.62795 * 174.43672 * 12 10 8 27 27 N 1.31886 * 119.56870 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46944 * 89.99814 * 1 2 3 29 29 H 1.08998 * 109.47794 * 210.00063 * 1 2 3 30 30 H 1.08997 * 109.47167 * 330.00624 * 1 2 3 31 31 H 1.08001 * 120.34113 * 359.97345 * 3 2 1 32 32 H 1.07997 * 120.75204 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.44718 * 179.75107 * 5 4 3 34 34 H 0.97007 * 119.99411 * 355.49480 * 7 6 5 35 35 H 1.08998 * 109.58349 * 246.20155 * 13 12 10 36 36 H 1.09001 * 109.58512 * 6.62353 * 13 12 10 37 37 H 1.09006 * 109.63210 * 294.86156 * 14 13 12 38 38 H 1.09000 * 109.43133 * 174.72294 * 14 13 12 39 39 H 1.08999 * 109.45115 * 58.52121 * 15 14 13 40 40 H 1.09006 * 109.46958 * 55.06380 * 16 15 14 41 41 H 1.08996 * 109.47930 * 175.06894 * 16 15 14 42 42 H 0.97008 * 120.00158 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.49490 * 301.41361 * 25 15 14 44 44 H 1.08999 * 109.52542 * 181.33531 * 25 15 14 45 45 H 1.08999 * 109.58933 * 353.37307 * 26 12 10 46 46 H 1.09002 * 109.58585 * 113.65343 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2014 0.0000 4 6 3.5768 1.1951 0.0005 5 6 4.2315 -0.0242 -0.0042 6 6 3.4811 -1.1947 0.0006 7 7 4.1270 -2.4284 0.0008 8 6 3.4091 -3.5649 0.0969 9 8 2.1964 -3.5181 0.1006 10 6 4.1060 -4.8821 0.1989 11 8 5.3124 -4.9409 0.0816 12 7 3.3949 -6.0053 0.4210 13 6 1.9525 -5.9368 0.6919 14 6 1.2255 -6.8623 -0.2955 15 6 1.8171 -8.2702 -0.1961 16 6 1.0714 -9.2051 -1.1505 17 6 -0.3614 -9.3406 -0.7036 18 1 -0.7056 -8.8130 0.1737 19 6 -1.2328 -10.1380 -1.4146 20 7 -0.8138 -10.7800 -2.4831 21 14 -3.0091 -10.3054 -0.8610 22 1 -3.8316 -9.2541 -1.5118 23 1 -3.5231 -11.6446 -1.2451 24 1 -3.0845 -10.1506 0.6140 25 6 3.2992 -8.2305 -0.5756 26 6 4.0486 -7.3209 0.4030 27 7 2.1578 -1.1471 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6475 2.1359 -0.0004 32 1 4.1332 2.1207 0.0001 33 1 5.3107 -0.0660 -0.0080 34 1 5.0937 -2.4696 -0.0684 35 1 1.7567 -6.2620 1.7136 36 1 1.6040 -4.9126 0.5591 37 1 1.3510 -6.4858 -1.3107 38 1 0.1646 -6.8953 -0.0477 39 1 1.7136 -8.6361 0.8254 40 1 1.0999 -8.7927 -2.1592 41 1 1.5479 -10.1854 -1.1452 42 1 -1.4271 -11.3408 -2.9836 43 1 3.4051 -7.8411 -1.5882 44 1 3.7145 -9.2371 -0.5277 45 1 5.0836 -7.2103 0.0796 46 1 4.0226 -7.7556 1.4023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573605586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:16 Heat of formation + Delta-G solvation = -33.793170 kcal Electronic energy + Delta-G solvation = -28128.443489 eV Core-core repulsion = 24210.980425 eV Total energy + Delta-G solvation = -3917.463064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.43662 -41.24535 -39.75617 -38.88615 -36.65238 -35.59922 -34.00866 -33.73622 -32.34069 -32.07935 -30.00106 -28.64197 -27.23783 -25.76246 -24.38503 -23.99408 -23.36295 -22.68837 -21.56616 -20.49820 -19.07353 -18.65622 -18.41787 -17.76049 -17.18861 -17.13129 -16.77071 -16.55022 -16.21062 -16.03441 -15.54945 -15.17865 -15.11657 -14.93301 -14.74426 -14.46986 -14.23021 -14.05038 -13.86279 -13.56856 -13.43798 -13.08355 -13.01945 -12.89142 -12.73667 -12.61035 -12.49402 -12.33134 -12.10911 -11.82627 -11.76968 -11.42884 -11.24044 -10.88032 -10.72253 -10.63138 -10.51260 -9.86382 -9.79849 -9.29556 -8.17255 -6.26497 -0.20245 0.32325 0.57477 1.05094 1.40168 1.41202 1.51900 1.98682 2.21906 2.42145 2.87358 2.95774 3.16317 3.46996 3.87796 3.90977 3.99760 4.02878 4.06181 4.17175 4.20711 4.32086 4.38198 4.56992 4.62171 4.62944 4.74009 4.79332 4.82242 4.84561 4.90310 5.02185 5.04468 5.18159 5.21641 5.27264 5.28940 5.33063 5.37408 5.46837 5.55287 5.74063 5.80767 5.86779 5.88588 6.10476 6.29015 6.50126 6.74936 6.89751 7.17407 7.41996 8.94739 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.002802 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.432572 B = 9991.508015 C =11700.602841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.131 3.869 3 C -0.193 4.193 4 C -0.043 4.043 5 C -0.200 4.200 6 C 0.328 3.672 7 N -0.625 5.625 8 C 0.503 3.497 9 O -0.458 6.458 10 C 0.509 3.491 11 O -0.542 6.542 12 N -0.569 5.569 13 C 0.056 3.944 14 C -0.104 4.104 15 C -0.076 4.076 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.064 0.936 19 C -0.003 4.003 20 N -0.937 5.937 21 Si 0.960 3.040 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.261 1.261 25 C -0.122 4.122 26 C 0.114 3.886 27 N -0.520 5.520 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.167 0.833 34 H 0.439 0.561 35 H 0.078 0.922 36 H 0.149 0.851 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.064 0.936 40 H -0.017 1.017 41 H -0.009 1.009 42 H 0.261 0.739 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.334 26.924 8.026 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.006 4.006 3 C -0.214 4.214 4 C -0.068 4.068 5 C -0.222 4.222 6 C 0.098 3.902 7 N -0.274 5.274 8 C 0.285 3.715 9 O -0.329 6.329 10 C 0.291 3.709 11 O -0.422 6.422 12 N -0.301 5.301 13 C -0.065 4.065 14 C -0.143 4.143 15 C -0.094 4.094 16 C -0.004 4.004 17 C -0.566 4.566 18 H 0.082 0.918 19 C -0.200 4.200 20 N -0.578 5.578 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.185 1.185 25 C -0.160 4.160 26 C -0.007 4.007 27 N -0.237 5.237 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.184 0.816 32 H 0.196 0.804 33 H 0.185 0.815 34 H 0.280 0.720 35 H 0.096 0.904 36 H 0.165 0.835 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.001 0.999 41 H 0.009 0.991 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.115 0.885 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.592 25.911 7.864 29.076 hybrid contribution -0.167 -0.367 -0.408 0.574 sum 10.425 25.544 7.455 28.579 Atomic orbital electron populations 1.20787 0.87757 1.03951 1.03549 1.21625 0.97937 0.87692 0.93389 1.22283 0.95661 0.99377 1.04035 1.21868 0.94197 0.98504 0.92245 1.21828 1.02454 0.90766 1.07192 1.18713 0.89324 0.85372 0.96776 1.43151 1.12187 1.02540 1.69529 1.20451 0.87474 0.85682 0.77909 1.90457 1.13760 1.84559 1.44134 1.19873 0.86894 0.85353 0.78808 1.90717 1.13589 1.86670 1.51184 1.48149 1.10642 1.05860 1.65469 1.23387 0.77425 1.06627 0.99024 1.21745 1.00016 0.94307 0.98196 1.21092 0.93641 0.95218 0.99494 1.19012 0.94431 0.93333 0.93597 1.21662 0.96269 1.27121 1.11501 0.91829 1.25956 1.03426 0.95525 0.95131 1.70108 1.37012 1.31612 1.19029 0.85525 0.79583 0.77308 0.79136 1.20097 1.21005 1.18499 1.21925 0.95572 0.99957 0.98525 1.21862 0.97292 0.80629 1.00911 1.67318 1.08170 1.31489 1.16703 0.90048 0.92215 0.87808 0.81629 0.80401 0.81522 0.71994 0.90352 0.83488 0.94307 0.91255 0.91722 0.99876 0.99051 0.93011 0.93363 0.89926 0.88496 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 10.17 71.24 0.72 -0.95 16 2 C 0.13 2.63 6.78 42.53 0.29 2.92 16 3 C -0.19 -2.41 9.73 22.38 0.22 -2.19 16 4 C -0.04 -0.42 10.17 22.44 0.23 -0.19 16 5 C -0.20 -2.68 9.94 22.50 0.22 -2.46 16 6 C 0.33 7.22 7.42 132.95 0.99 8.21 16 7 N -0.62 -13.80 5.38 -309.81 -1.67 -15.47 16 8 C 0.50 14.29 7.74 87.24 0.68 14.96 16 9 O -0.46 -15.27 11.34 -3.28 -0.04 -15.31 16 10 C 0.51 14.99 7.75 87.24 0.68 15.67 16 11 O -0.54 -16.52 15.93 -3.28 -0.05 -16.57 16 12 N -0.57 -17.27 2.97 -819.76 -2.43 -19.70 16 13 C 0.06 1.78 6.31 86.51 0.55 2.32 16 14 C -0.10 -4.05 5.21 30.81 0.16 -3.89 16 15 C -0.08 -3.09 2.10 -10.77 -0.02 -3.11 16 16 C 0.03 1.77 4.45 29.85 0.13 1.90 16 17 C -0.53 -29.89 8.39 25.60 0.21 -29.68 16 18 H 0.06 3.43 7.06 -2.91 -0.02 3.41 16 19 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 20 N -0.94 -58.05 13.29 21.44 0.28 -57.77 16 21 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 C -0.12 -4.15 5.36 30.67 0.16 -3.98 16 26 C 0.11 3.24 6.41 86.36 0.55 3.80 16 27 N -0.52 -13.81 7.79 -181.18 -1.41 -15.22 16 28 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.00 8.08 -2.39 -0.02 0.98 16 31 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 32 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 33 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.44 7.19 8.18 -92.70 -0.76 6.44 16 35 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 36 H 0.15 4.90 3.74 -81.65 -0.31 4.59 16 37 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.07 2.87 6.91 -2.39 -0.02 2.86 16 39 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 40 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 43 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.10 2.62 7.04 -2.39 -0.02 2.60 16 46 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -75.83 375.83 2.89 -72.94 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -0.05 Total: 16.54 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 6.23 Total: 3.58 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -5.22 Total: -108.15 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.09 Total: -31.88 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.83 2.89 -72.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573605586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.144 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds