Wall clock time and date at job start Tue Mar 31 2020 17:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34700 * 125.66903 * 2 1 4 4 C 1.40970 * 107.02853 * 179.97438 * 3 2 1 5 5 C 1.35907 * 106.74519 * 0.02562 * 4 3 2 6 6 C 1.47867 * 125.93209 * 179.97438 * 5 4 3 7 7 N 1.31804 * 126.06265 * 325.18529 * 6 5 4 8 8 N 1.40074 * 108.08082 * 180.27799 * 7 6 5 9 9 C 1.46497 * 125.91112 * 179.68185 * 8 7 6 10 10 C 1.35067 * 108.17827 * 359.71546 * 8 7 6 11 11 C 1.35031 * 108.03401 * 0.02562 * 10 8 7 12 12 C 1.50694 * 126.08448 * 180.02562 * 11 10 8 13 13 N 1.46901 * 109.46776 * 260.02366 * 12 11 10 14 14 C 1.47444 * 111.00291 * 69.87334 * 13 12 11 15 15 C 1.54319 * 107.23503 * 123.25666 * 14 13 12 16 16 C 1.55142 * 103.01869 * 22.28089 * 15 14 13 17 17 O 1.42904 * 110.98757 * 82.47569 * 16 15 14 18 18 C 1.50696 * 110.98988 * 206.25313 * 16 15 14 19 19 H 1.08006 * 120.00201 * 116.90860 * 18 16 15 20 20 C 1.37879 * 120.00142 * 296.90710 * 18 16 15 21 21 N 1.31512 * 120.00213 * 5.06642 * 20 18 16 22 22 Si 1.86806 * 119.99914 * 185.05993 * 20 18 16 23 23 H 1.48501 * 109.47031 * 85.00025 * 22 20 18 24 24 H 1.48497 * 109.46984 * 205.00042 * 22 20 18 25 25 H 1.48509 * 109.46973 * 325.00044 * 22 20 18 26 26 C 1.47852 * 110.99772 * 190.71550 * 13 12 11 27 27 O 1.34345 * 125.66681 * 180.27626 * 2 1 3 28 28 H 1.09003 * 109.47266 * 90.00339 * 1 2 3 29 29 H 1.08999 * 109.47385 * 210.00335 * 1 2 3 30 30 H 1.09003 * 109.47536 * 330.00578 * 1 2 3 31 31 H 1.08000 * 126.48429 * 0.03534 * 3 2 1 32 32 H 1.08005 * 126.63161 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.46934 * 270.04613 * 9 8 7 34 34 H 1.09008 * 109.47026 * 30.04325 * 9 8 7 35 35 H 1.08999 * 109.47225 * 150.04041 * 9 8 7 36 36 H 1.07996 * 125.98195 * 180.02562 * 10 8 7 37 37 H 1.08997 * 109.46921 * 20.01426 * 12 11 10 38 38 H 1.08995 * 109.47500 * 140.01844 * 12 11 10 39 39 H 1.09002 * 109.88656 * 242.65963 * 14 13 12 40 40 H 1.09003 * 109.88975 * 3.84787 * 14 13 12 41 41 H 1.09002 * 110.70544 * 140.66622 * 15 14 13 42 42 H 1.08997 * 110.70544 * 263.72665 * 15 14 13 43 43 H 0.96706 * 113.99785 * 54.62455 * 17 16 15 44 44 H 0.96995 * 119.99811 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.37413 * 332.46053 * 26 13 12 46 46 H 1.08993 * 110.37523 * 94.80835 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2924 1.0943 0.0000 4 6 3.6281 0.6437 0.0006 5 6 3.5832 -0.7146 0.0004 6 6 4.7511 -1.6214 0.0003 7 7 5.9005 -1.4062 -0.6079 8 7 6.7328 -2.5067 -0.3665 9 6 8.0993 -2.6766 -0.8665 10 6 6.0572 -3.3844 0.4065 11 6 4.8340 -2.8686 0.6536 12 6 3.7488 -3.5131 1.4769 13 7 2.7688 -4.1472 0.5849 14 6 3.3456 -5.3317 -0.0771 15 6 2.4374 -6.5324 0.2617 16 6 1.0880 -5.8584 0.6248 17 8 0.3365 -5.5512 -0.5512 18 6 0.2873 -6.7244 1.5628 19 1 0.0540 -6.3720 2.5567 20 6 -0.1476 -7.9668 1.1522 21 7 0.2194 -8.4378 -0.0195 22 14 -1.2581 -8.9809 2.2604 23 1 -2.6710 -8.5744 2.0509 24 1 -1.1034 -10.4208 1.9321 25 1 -0.8827 -8.7534 3.6791 26 6 1.5644 -4.5659 1.3333 27 8 2.2903 -1.0914 -0.0053 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.9614 2.1223 0.0005 32 1 4.5158 1.2590 0.0004 33 1 8.0725 -3.1793 -1.8332 34 1 8.5695 -1.6995 -0.9780 35 1 8.6726 -3.2772 -0.1603 36 1 6.4301 -4.3328 0.7642 37 1 4.1876 -4.2678 2.1295 38 1 3.2522 -2.7543 2.0815 39 1 3.3703 -5.1782 -1.1560 40 1 4.3534 -5.5118 0.2972 41 1 2.3218 -7.1846 -0.6040 42 1 2.8344 -7.0884 1.1110 43 1 0.1883 -6.3097 -1.1326 44 1 -0.0862 -9.3120 -0.3081 45 1 1.8170 -4.7741 2.3729 46 1 0.7951 -3.7960 1.2756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592526196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:58 Heat of formation + Delta-G solvation = 57.113223 kcal Electronic energy + Delta-G solvation = -29128.804240 eV Core-core repulsion = 25215.283173 eV Total energy + Delta-G solvation = -3913.521067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.29172 -41.06500 -38.20178 -34.87482 -33.69307 -32.93880 -32.09125 -31.68199 -30.97199 -29.14170 -27.99027 -27.72532 -25.94658 -24.66740 -23.57041 -22.04410 -21.03751 -20.37450 -20.00652 -19.47624 -19.28155 -17.07893 -16.84581 -16.01318 -15.84453 -15.48013 -15.08808 -14.81431 -14.55356 -14.45160 -14.06597 -13.75222 -13.60463 -13.08247 -12.99042 -12.81404 -12.70236 -12.59003 -12.49936 -12.36330 -12.08194 -11.91546 -11.63621 -11.48548 -11.22071 -11.06718 -10.89661 -10.64059 -10.56222 -10.36560 -10.21310 -9.81038 -9.76488 -9.47665 -9.12946 -8.57958 -8.47580 -7.99982 -7.81574 -7.40482 -6.15420 -4.22596 1.41550 2.02225 2.27828 2.59121 3.01744 3.25548 3.32034 3.34595 3.40518 4.33820 4.43583 4.66741 4.83027 4.95060 4.98505 5.07635 5.12749 5.19428 5.20955 5.34897 5.40945 5.52339 5.62159 5.77130 5.80212 5.85474 5.89439 6.00899 6.06450 6.09966 6.15434 6.20740 6.27161 6.38048 6.56010 6.57168 6.70935 6.78372 6.95851 6.97103 7.16377 7.37555 7.45597 7.55706 7.68136 7.78612 7.87265 7.94607 8.26979 8.79079 9.45833 9.55696 10.91383 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.003848 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.836109 B = 7274.142126 C = 9026.236073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.003 3.997 3 C -0.225 4.225 4 C -0.179 4.179 5 C 0.064 3.936 6 C 0.161 3.839 7 N -0.276 5.276 8 N -0.373 5.373 9 C 0.105 3.895 10 C 0.056 3.944 11 C -0.191 4.191 12 C 0.127 3.873 13 N -0.514 5.514 14 C 0.049 3.951 15 C -0.144 4.144 16 C 0.253 3.747 17 O -0.575 6.575 18 C -0.534 4.534 19 H 0.059 0.941 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.062 3.938 27 O -0.132 6.132 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.175 0.825 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.372 0.628 44 H 0.265 0.735 45 H 0.043 0.957 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.498 12.969 0.127 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C -0.244 4.244 4 C -0.200 4.200 5 C 0.011 3.989 6 C -0.003 4.003 7 N -0.101 5.101 8 N -0.157 5.157 9 C -0.036 4.036 10 C -0.089 4.089 11 C -0.202 4.202 12 C -0.003 4.003 13 N -0.237 5.237 14 C -0.079 4.079 15 C -0.183 4.183 16 C 0.213 3.787 17 O -0.382 6.382 18 C -0.572 4.572 19 H 0.078 0.922 20 C -0.129 4.129 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.065 4.065 27 O -0.025 6.025 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.192 0.808 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.220 0.780 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.105 14.226 -0.866 18.699 hybrid contribution -0.463 -2.322 1.337 2.719 sum 11.641 11.904 0.471 16.657 Atomic orbital electron populations 1.20332 0.85076 1.04149 1.03686 1.22620 0.94196 0.84138 1.03966 1.21413 0.92446 0.99232 1.11288 1.21676 0.98056 0.93004 1.07285 1.18651 0.81233 0.90672 1.08344 1.18954 0.90313 0.93467 0.97561 1.77583 1.01804 1.07850 1.22874 1.48269 1.12988 1.14094 1.40300 1.21844 0.77617 1.03851 1.00303 1.22255 0.93254 0.96534 0.96890 1.20098 0.96012 0.96072 1.08068 1.20442 0.90559 0.97060 0.92206 1.63583 1.04963 1.26685 1.28518 1.22788 0.95991 0.90366 0.98764 1.23277 0.97497 0.96007 1.01502 1.19511 0.87191 0.88403 0.83613 1.86186 1.76531 1.39355 1.36141 1.21535 1.34730 1.00880 1.00096 0.92239 1.24971 0.95450 0.97189 0.95302 1.69786 1.44393 1.19101 1.19997 0.86545 0.81268 0.78916 0.80841 1.20379 1.21271 1.19947 1.22955 0.90913 0.97865 0.94746 1.84292 1.14815 1.33630 1.69750 0.90013 0.89850 0.89643 0.83603 0.83646 0.90659 0.89363 0.89416 0.80802 0.94533 0.90847 0.92332 0.95005 0.90643 0.92751 0.77972 0.92551 0.93853 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.41 36.00 0.37 -0.48 16 2 C 0.00 0.05 7.32 -35.56 -0.26 -0.21 16 3 C -0.22 -3.00 10.78 -39.80 -0.43 -3.43 16 4 C -0.18 -2.64 10.85 -39.38 -0.43 -3.07 16 5 C 0.06 1.08 6.98 -36.48 -0.25 0.83 16 6 C 0.16 2.74 7.07 -82.88 -0.59 2.16 16 7 N -0.28 -4.40 12.62 33.36 0.42 -3.98 16 8 N -0.37 -4.79 4.01 -68.21 -0.27 -5.07 16 9 C 0.11 0.79 11.46 59.85 0.69 1.47 16 10 C 0.06 0.74 10.76 -17.27 -0.19 0.55 16 11 C -0.19 -3.09 5.11 -104.70 -0.53 -3.62 16 12 C 0.13 2.17 4.70 -4.98 -0.02 2.15 16 13 N -0.51 -10.37 5.15 -232.69 -1.20 -11.57 16 14 C 0.05 0.99 6.41 -2.83 -0.02 0.97 16 15 C -0.14 -3.34 5.33 -24.91 -0.13 -3.47 16 16 C 0.25 6.34 0.86 -89.64 -0.08 6.26 16 17 O -0.58 -15.28 13.14 -35.23 -0.46 -15.74 16 18 C -0.53 -14.40 8.26 -34.44 -0.28 -14.69 16 19 H 0.06 1.59 7.79 -52.48 -0.41 1.19 16 20 C 0.07 1.95 5.32 -17.82 -0.09 1.86 16 21 N -0.89 -24.02 10.85 55.43 0.60 -23.42 16 22 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.06 1.38 5.86 -2.29 -0.01 1.37 16 27 O -0.13 -2.37 10.56 4.58 0.05 -2.32 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.15 1.89 8.06 -52.48 -0.42 1.47 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.04 0.59 7.95 -51.93 -0.41 0.18 16 38 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.03 0.57 6.79 -51.93 -0.35 0.21 16 41 H 0.07 1.87 7.47 -51.93 -0.39 1.48 16 42 H 0.05 1.28 8.04 -51.93 -0.42 0.87 16 43 H 0.37 9.88 7.71 45.56 0.35 10.23 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.04 0.93 7.70 -51.93 -0.40 0.53 16 46 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -32.00 383.80 -8.59 -40.60 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.23 Total: 11.32 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.26 Total: -11.34 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.45 Total: -44.04 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.41 Total: -18.06 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.00 -8.59 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592526196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.712 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds