Wall clock time and date at job start Tue Mar 31 2020 17:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34700 * 125.66903 * 2 1 4 4 C 1.40970 * 107.02853 * 179.97438 * 3 2 1 5 5 C 1.35907 * 106.74519 * 0.02562 * 4 3 2 6 6 C 1.47867 * 125.93209 * 179.97438 * 5 4 3 7 7 N 1.31804 * 126.06265 * 325.18529 * 6 5 4 8 8 N 1.40074 * 108.08082 * 180.27799 * 7 6 5 9 9 C 1.46497 * 125.91112 * 179.68185 * 8 7 6 10 10 C 1.35067 * 108.17827 * 359.71546 * 8 7 6 11 11 C 1.35031 * 108.03401 * 0.02562 * 10 8 7 12 12 C 1.50694 * 126.08448 * 180.02562 * 11 10 8 13 13 N 1.46901 * 109.46776 * 260.02366 * 12 11 10 14 14 C 1.47444 * 111.00291 * 69.87334 * 13 12 11 15 15 C 1.54319 * 107.23503 * 123.25666 * 14 13 12 16 16 C 1.55142 * 103.01869 * 22.28089 * 15 14 13 17 17 O 1.42904 * 110.98757 * 82.47569 * 16 15 14 18 18 C 1.50696 * 110.98988 * 206.25313 * 16 15 14 19 19 H 1.08006 * 120.00201 * 116.90860 * 18 16 15 20 20 C 1.37879 * 120.00142 * 296.90710 * 18 16 15 21 21 N 1.31512 * 120.00213 * 5.06642 * 20 18 16 22 22 Si 1.86806 * 119.99914 * 185.05993 * 20 18 16 23 23 H 1.48501 * 109.47031 * 85.00025 * 22 20 18 24 24 H 1.48497 * 109.46984 * 205.00042 * 22 20 18 25 25 H 1.48509 * 109.46973 * 325.00044 * 22 20 18 26 26 C 1.47852 * 110.99772 * 190.71550 * 13 12 11 27 27 O 1.34345 * 125.66681 * 180.27626 * 2 1 3 28 28 H 1.09003 * 109.47266 * 90.00339 * 1 2 3 29 29 H 1.08999 * 109.47385 * 210.00335 * 1 2 3 30 30 H 1.09003 * 109.47536 * 330.00578 * 1 2 3 31 31 H 1.08000 * 126.48429 * 0.03534 * 3 2 1 32 32 H 1.08005 * 126.63161 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.46934 * 270.04613 * 9 8 7 34 34 H 1.09008 * 109.47026 * 30.04325 * 9 8 7 35 35 H 1.08999 * 109.47225 * 150.04041 * 9 8 7 36 36 H 1.07996 * 125.98195 * 180.02562 * 10 8 7 37 37 H 1.08997 * 109.46921 * 20.01426 * 12 11 10 38 38 H 1.08995 * 109.47500 * 140.01844 * 12 11 10 39 39 H 1.09002 * 109.88656 * 242.65963 * 14 13 12 40 40 H 1.09003 * 109.88975 * 3.84787 * 14 13 12 41 41 H 1.09002 * 110.70544 * 140.66622 * 15 14 13 42 42 H 1.08997 * 110.70544 * 263.72665 * 15 14 13 43 43 H 0.96706 * 113.99785 * 54.62455 * 17 16 15 44 44 H 0.96995 * 119.99811 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.37413 * 332.46053 * 26 13 12 46 46 H 1.08993 * 110.37523 * 94.80835 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2924 1.0943 0.0000 4 6 3.6281 0.6437 0.0006 5 6 3.5832 -0.7146 0.0004 6 6 4.7511 -1.6214 0.0003 7 7 5.9005 -1.4062 -0.6079 8 7 6.7328 -2.5067 -0.3665 9 6 8.0993 -2.6766 -0.8665 10 6 6.0572 -3.3844 0.4065 11 6 4.8340 -2.8686 0.6536 12 6 3.7488 -3.5131 1.4769 13 7 2.7688 -4.1472 0.5849 14 6 3.3456 -5.3317 -0.0771 15 6 2.4374 -6.5324 0.2617 16 6 1.0880 -5.8584 0.6248 17 8 0.3365 -5.5512 -0.5512 18 6 0.2873 -6.7244 1.5628 19 1 0.0540 -6.3720 2.5567 20 6 -0.1476 -7.9668 1.1522 21 7 0.2194 -8.4378 -0.0195 22 14 -1.2581 -8.9809 2.2604 23 1 -2.6710 -8.5744 2.0509 24 1 -1.1034 -10.4208 1.9321 25 1 -0.8827 -8.7534 3.6791 26 6 1.5644 -4.5659 1.3333 27 8 2.2903 -1.0914 -0.0053 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.9614 2.1223 0.0005 32 1 4.5158 1.2590 0.0004 33 1 8.0725 -3.1793 -1.8332 34 1 8.5695 -1.6995 -0.9780 35 1 8.6726 -3.2772 -0.1603 36 1 6.4301 -4.3328 0.7642 37 1 4.1876 -4.2678 2.1295 38 1 3.2522 -2.7543 2.0815 39 1 3.3703 -5.1782 -1.1560 40 1 4.3534 -5.5118 0.2972 41 1 2.3218 -7.1846 -0.6040 42 1 2.8344 -7.0884 1.1110 43 1 0.1883 -6.3097 -1.1326 44 1 -0.0862 -9.3120 -0.3081 45 1 1.8170 -4.7741 2.3729 46 1 0.7951 -3.7960 1.2756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592526196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:57 Heat of formation + Delta-G solvation = 34.676357 kcal Electronic energy + Delta-G solvation = -29129.777176 eV Core-core repulsion = 25215.283173 eV Total energy + Delta-G solvation = -3914.494003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.43056 -42.14144 -39.95328 -36.63689 -34.76667 -34.16549 -34.06367 -32.89691 -32.16732 -30.56338 -29.79252 -28.77965 -27.29068 -26.17446 -25.01629 -23.12340 -22.25263 -21.64165 -21.35840 -21.31082 -20.51174 -18.95606 -18.06390 -17.15624 -16.96300 -16.86038 -16.80891 -16.46790 -16.06347 -15.76249 -15.53327 -15.05556 -14.90172 -14.35441 -14.00291 -13.87680 -13.86363 -13.76721 -13.67046 -13.52622 -13.49628 -13.26805 -13.15059 -13.04172 -12.84976 -12.68203 -12.60799 -12.35832 -12.20709 -12.11938 -11.75556 -11.57761 -11.05929 -10.91211 -10.58609 -10.52198 -10.05332 -9.59233 -9.00519 -8.90686 -8.17961 -6.32913 0.29021 0.95871 1.32277 1.41318 1.43950 1.51131 1.52122 1.94185 2.31251 2.40522 3.06254 3.34552 3.52756 3.71633 3.93748 4.03405 4.05352 4.14662 4.15409 4.15872 4.42392 4.43905 4.46188 4.50931 4.59709 4.64994 4.71273 4.74256 4.75626 4.79512 4.87278 4.88137 4.95925 5.05091 5.09481 5.13349 5.25328 5.31751 5.45076 5.49801 5.58605 5.68673 5.83611 6.04356 6.06050 6.26956 6.32015 6.40222 6.59145 6.72239 7.38389 7.46890 8.87099 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.003848 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.836109 B = 7274.142126 C = 9026.236073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.016 4.016 3 C -0.217 4.217 4 C -0.178 4.178 5 C 0.031 3.969 6 C 0.140 3.860 7 N -0.300 5.300 8 N -0.365 5.365 9 C 0.093 3.907 10 C 0.073 3.927 11 C -0.224 4.224 12 C 0.134 3.866 13 N -0.521 5.521 14 C 0.062 3.938 15 C -0.132 4.132 16 C 0.237 3.763 17 O -0.586 6.586 18 C -0.560 4.560 19 H 0.053 0.947 20 C 0.033 3.967 21 N -0.909 5.909 22 Si 0.957 3.043 23 H -0.278 1.278 24 H -0.281 1.281 25 H -0.270 1.270 26 C 0.073 3.927 27 O -0.165 6.165 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.179 0.821 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.211 0.789 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.368 0.632 44 H 0.267 0.733 45 H 0.048 0.952 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 13.278 0.722 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 C -0.236 4.236 4 C -0.199 4.199 5 C -0.021 4.021 6 C -0.023 4.023 7 N -0.126 5.126 8 N -0.148 5.148 9 C -0.046 4.046 10 C -0.074 4.074 11 C -0.235 4.235 12 C 0.006 3.994 13 N -0.245 5.245 14 C -0.066 4.066 15 C -0.171 4.171 16 C 0.197 3.803 17 O -0.393 6.393 18 C -0.598 4.598 19 H 0.071 0.929 20 C -0.167 4.167 21 N -0.548 5.548 22 Si 0.782 3.218 23 H -0.204 1.204 24 H -0.206 1.206 25 H -0.194 1.194 26 C -0.054 4.054 27 O -0.060 6.060 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.197 0.803 32 H 0.177 0.823 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.228 0.772 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.215 0.785 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.645 14.562 -0.281 19.958 hybrid contribution -0.861 -2.381 1.107 2.764 sum 12.784 12.181 0.826 17.677 Atomic orbital electron populations 1.20480 0.83170 1.04920 1.04432 1.23346 0.95480 0.83977 1.03976 1.21776 0.91523 1.00389 1.09918 1.21966 0.99245 0.92470 1.06216 1.19038 0.81197 0.91802 1.10025 1.19154 0.90713 0.94144 0.98279 1.77506 1.02043 1.09566 1.23490 1.48725 1.14072 1.12908 1.39074 1.22317 0.75296 1.05237 1.01759 1.22720 0.92176 0.97177 0.95329 1.20072 0.97026 0.96603 1.09812 1.20352 0.90230 0.96853 0.92003 1.63500 1.05298 1.26393 1.29304 1.22623 0.96819 0.88951 0.98195 1.23056 0.97288 0.96561 1.00190 1.19753 0.87667 0.89848 0.83026 1.86183 1.77116 1.39291 1.36694 1.21795 1.35923 1.01771 1.00327 0.92873 1.25647 0.96438 0.98044 0.96621 1.69876 1.44687 1.19327 1.20945 0.85605 0.79256 0.77581 0.79332 1.20393 1.20609 1.19449 1.22747 0.91663 0.96121 0.94889 1.84255 1.15639 1.35448 1.70641 0.89203 0.91491 0.86378 0.80344 0.82304 0.89577 0.88552 0.85958 0.77230 0.93051 0.91758 0.93591 0.91898 0.92668 0.93383 0.78508 0.92393 0.93337 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.41 71.23 0.74 -0.90 16 2 C -0.02 -0.47 7.32 24.87 0.18 -0.29 16 3 C -0.22 -5.58 10.78 22.13 0.24 -5.34 16 4 C -0.18 -5.20 10.85 22.40 0.24 -4.96 16 5 C 0.03 1.08 6.98 24.28 0.17 1.25 16 6 C 0.14 4.77 7.07 42.39 0.30 5.07 16 7 N -0.30 -9.34 12.62 -48.36 -0.61 -9.95 16 8 N -0.37 -8.52 4.01 -369.71 -1.48 -10.01 16 9 C 0.09 1.09 11.46 127.77 1.46 2.55 16 10 C 0.07 1.75 10.76 83.46 0.90 2.64 16 11 C -0.22 -7.02 5.11 -19.92 -0.10 -7.12 16 12 C 0.13 4.55 4.70 85.56 0.40 4.95 16 13 N -0.52 -21.15 5.15 -890.10 -4.58 -25.74 16 14 C 0.06 2.48 6.41 86.65 0.56 3.03 16 15 C -0.13 -6.17 5.33 31.78 0.17 -6.00 16 16 C 0.24 12.12 0.86 -10.16 -0.01 12.11 16 17 O -0.59 -32.14 13.14 -148.98 -1.96 -34.09 16 18 C -0.56 -30.63 8.26 25.60 0.21 -30.42 16 19 H 0.05 2.89 7.79 -2.91 -0.02 2.87 16 20 C 0.03 1.78 5.32 84.66 0.45 2.23 16 21 N -0.91 -49.29 10.85 21.45 0.23 -49.05 16 22 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.07 3.33 5.86 86.77 0.51 3.84 16 27 O -0.16 -6.14 10.56 -6.53 -0.07 -6.21 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.21 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.05 1.57 7.95 -2.39 -0.02 1.55 16 38 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 2.10 6.79 -2.39 -0.02 2.09 16 41 H 0.05 2.78 7.47 -2.39 -0.02 2.76 16 42 H 0.05 2.27 8.04 -2.39 -0.02 2.25 16 43 H 0.37 20.22 7.71 -74.05 -0.57 19.65 16 44 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 45 H 0.05 2.11 7.70 -2.39 -0.02 2.09 16 46 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -71.04 383.80 0.40 -70.64 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: 0.42 Total: 37.20 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 6.42 Total: -17.34 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -6.44 Total: -94.75 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -2.03 Total: -40.31 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -71.04 0.40 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592526196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.312 kcal (2) G-P(sol) polarization free energy of solvation -71.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds