Wall clock time and date at job start Tue Mar 31 2020 17:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34701 * 125.67034 * 2 1 4 4 C 1.40973 * 107.02997 * 179.76553 * 3 2 1 5 5 C 1.35909 * 106.74096 * 0.38122 * 4 3 2 6 6 C 1.47861 * 125.92858 * 179.88416 * 5 4 3 7 7 N 1.31803 * 126.07007 * 320.35419 * 6 5 4 8 8 N 1.40062 * 108.08583 * 179.97438 * 7 6 5 9 9 C 1.46506 * 125.91029 * 180.02562 * 8 7 6 10 10 C 1.35066 * 108.18260 * 359.73436 * 8 7 6 11 11 C 1.35036 * 108.02828 * 0.42912 * 10 8 7 12 12 C 1.50698 * 126.08046 * 179.83512 * 11 10 8 13 13 N 1.46892 * 109.47249 * 305.31592 * 12 11 10 14 14 C 1.47445 * 111.00294 * 74.12422 * 13 12 11 15 15 C 1.54319 * 107.23366 * 236.74073 * 14 13 12 16 16 C 1.55137 * 103.17609 * 337.63239 * 15 14 13 17 17 O 1.42905 * 110.98852 * 277.64637 * 16 15 14 18 18 C 1.50707 * 110.99226 * 153.83385 * 16 15 14 19 19 H 1.07999 * 119.99926 * 241.45317 * 18 16 15 20 20 C 1.37870 * 119.99929 * 61.44748 * 18 16 15 21 21 N 1.31510 * 120.00437 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99727 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47202 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47082 * 120.00316 * 22 20 18 25 25 H 1.48498 * 109.47244 * 239.99798 * 22 20 18 26 26 C 1.47851 * 111.00019 * 313.27833 * 13 12 11 27 27 O 1.34339 * 125.66845 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.47345 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47049 * 300.02399 * 1 2 3 30 30 H 1.09000 * 109.46841 * 60.01625 * 1 2 3 31 31 H 1.08001 * 126.48529 * 0.02562 * 3 2 1 32 32 H 1.07998 * 126.63118 * 180.23351 * 4 3 2 33 33 H 1.09001 * 109.46994 * 89.97471 * 9 8 7 34 34 H 1.08996 * 109.47315 * 209.97231 * 9 8 7 35 35 H 1.08997 * 109.46957 * 329.97298 * 9 8 7 36 36 H 1.07998 * 125.98944 * 180.29985 * 10 8 7 37 37 H 1.09002 * 109.46878 * 185.31090 * 12 11 10 38 38 H 1.08999 * 109.46752 * 65.31497 * 12 11 10 39 39 H 1.09001 * 109.88660 * 117.33866 * 14 13 12 40 40 H 1.08997 * 110.02043 * 356.22416 * 14 13 12 41 41 H 1.09003 * 110.70382 * 96.09889 * 15 14 13 42 42 H 1.09004 * 110.70569 * 219.15863 * 15 14 13 43 43 H 0.96697 * 113.99771 * 298.54319 * 17 16 15 44 44 H 0.97006 * 120.00404 * 180.02562 * 21 20 18 45 45 H 1.08994 * 110.37636 * 265.19744 * 26 13 12 46 46 H 1.09003 * 110.37017 * 27.54005 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0943 0.0000 4 6 3.6282 0.6437 0.0055 5 6 3.5832 -0.7146 -0.0001 6 6 4.7511 -1.6214 0.0003 7 7 5.8695 -1.4467 -0.6749 8 7 6.7168 -2.5275 -0.3999 9 6 8.0616 -2.7258 -0.9464 10 6 6.0822 -3.3521 0.4613 11 6 4.8663 -2.8266 0.7239 12 6 3.8210 -3.4192 1.6333 13 7 3.5333 -4.7979 1.2157 14 6 4.6332 -5.7046 1.5927 15 6 5.1207 -6.3937 0.3008 16 6 3.8999 -6.2701 -0.6483 17 8 2.9451 -7.3018 -0.3912 18 6 4.3340 -6.2868 -2.0914 19 1 4.1365 -5.4345 -2.7246 20 6 4.9834 -7.3900 -2.6032 21 7 5.2236 -8.4281 -1.8323 22 14 5.5222 -7.4104 -4.3917 23 1 5.1372 -6.1307 -5.0392 24 1 6.9962 -7.5768 -4.4628 25 1 4.8622 -8.5397 -5.0947 26 6 3.3374 -4.8783 -0.2476 27 8 2.2903 -1.0914 -0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5136 -0.8901 31 1 1.9615 2.1223 0.0004 32 1 4.5158 1.2590 0.0105 33 1 8.7940 -2.2596 -0.2872 34 1 8.2690 -3.7931 -1.0227 35 1 8.1223 -2.2722 -1.9356 36 1 6.4771 -4.2718 0.8670 37 1 2.9095 -2.8243 1.5753 38 1 4.1899 -3.4198 2.6590 39 1 4.2716 -6.4527 2.2982 40 1 5.4485 -5.1364 2.0403 41 1 5.9842 -5.8719 -0.1120 42 1 5.3585 -7.4408 0.4887 43 1 3.2852 -8.1961 -0.5312 44 1 5.6808 -9.2042 -2.1923 45 1 2.2774 -4.8129 -0.4927 46 1 3.8933 -4.0860 -0.7489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592526198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:02 Heat of formation + Delta-G solvation = 60.499947 kcal Electronic energy + Delta-G solvation = -29794.499994 eV Core-core repulsion = 25881.125786 eV Total energy + Delta-G solvation = -3913.374208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47518 -41.12204 -38.24721 -34.93704 -33.64908 -33.12455 -32.12613 -31.64038 -30.71635 -29.20775 -28.06770 -27.77328 -25.88986 -24.89890 -23.50258 -22.08379 -21.11727 -20.44146 -19.95047 -19.62646 -19.31895 -17.12077 -16.94973 -16.16587 -15.90267 -15.36041 -14.96266 -14.87649 -14.58923 -14.30990 -13.95208 -13.77763 -13.64987 -13.23264 -13.11596 -12.90925 -12.76225 -12.73657 -12.49146 -12.25772 -12.09701 -11.98659 -11.77529 -11.43370 -11.23958 -11.01001 -10.89743 -10.71395 -10.50000 -10.39893 -10.21411 -9.89870 -9.81521 -9.43532 -9.15201 -8.59903 -8.32741 -8.05970 -7.89461 -7.51703 -6.20994 -4.27943 1.39955 2.06673 2.36679 2.53133 2.96785 3.17386 3.27239 3.32817 3.34901 4.28846 4.50098 4.73101 4.87576 4.93736 5.06521 5.07632 5.10625 5.18452 5.32886 5.38212 5.44037 5.47446 5.54472 5.63052 5.71945 5.80941 5.86624 5.93707 6.03732 6.05591 6.11349 6.15137 6.27330 6.45071 6.54304 6.55678 6.66057 6.76331 6.95737 7.08132 7.11704 7.22432 7.44182 7.50959 7.70332 7.76088 7.83565 7.88302 8.22518 8.75271 9.40685 9.55955 10.85691 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.004346 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.377286 B = 6441.514709 C = 6885.073491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.005 4.005 3 C -0.216 4.216 4 C -0.176 4.176 5 C 0.069 3.931 6 C 0.142 3.858 7 N -0.272 5.272 8 N -0.363 5.363 9 C 0.102 3.898 10 C 0.072 3.928 11 C -0.237 4.237 12 C 0.124 3.876 13 N -0.518 5.518 14 C 0.037 3.963 15 C -0.144 4.144 16 C 0.254 3.746 17 O -0.579 6.579 18 C -0.528 4.528 19 H 0.057 0.943 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.281 1.281 26 C 0.060 3.940 27 O -0.156 6.156 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.181 0.819 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.375 0.625 44 H 0.265 0.735 45 H 0.064 0.936 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 14.021 6.218 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 C -0.235 4.235 4 C -0.197 4.197 5 C 0.018 3.982 6 C -0.023 4.023 7 N -0.097 5.097 8 N -0.145 5.145 9 C -0.039 4.039 10 C -0.074 4.074 11 C -0.250 4.250 12 C -0.006 4.006 13 N -0.240 5.240 14 C -0.091 4.091 15 C -0.183 4.183 16 C 0.213 3.787 17 O -0.386 6.386 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.129 4.129 21 N -0.535 5.535 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.207 1.207 26 C -0.067 4.067 27 O -0.051 6.051 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.197 0.803 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.224 0.776 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.627 14.596 5.756 15.703 hybrid contribution 1.418 -0.708 -1.137 1.951 sum 2.045 13.888 4.620 14.778 Atomic orbital electron populations 1.20329 0.85003 1.04426 1.03353 1.22541 0.94029 0.83991 1.05103 1.21429 0.92452 0.99319 1.10285 1.21692 0.98129 0.92932 1.06934 1.18724 0.80683 0.91091 1.07749 1.18974 0.91008 0.94216 0.98053 1.77535 1.01705 1.08544 1.21903 1.48330 1.14144 1.16520 1.35544 1.21912 0.78012 1.03682 1.00305 1.22582 0.93540 0.96813 0.94446 1.20915 0.97974 0.97610 1.08500 1.20810 0.94534 0.89787 0.95472 1.63844 1.39839 1.04342 1.15961 1.22964 0.91580 0.95553 0.98965 1.23294 0.99983 1.00760 0.94238 1.19609 0.83823 0.83714 0.91528 1.86164 1.42162 1.18512 1.91799 1.21569 1.37022 1.02083 0.96036 0.92429 1.24953 0.94823 0.95305 0.97863 1.69748 1.42395 1.05776 1.35587 0.86516 0.78109 0.78278 0.84995 1.19779 1.20990 1.20694 1.23122 1.00498 0.97819 0.85272 1.84110 1.15467 1.34618 1.70912 0.90195 0.89675 0.89691 0.83372 0.83390 0.90813 0.88844 0.89211 0.80254 0.90317 0.91043 0.91575 0.94571 0.92988 0.90558 0.77605 0.92542 0.91732 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.41 36.01 0.37 -0.29 16 2 C -0.01 -0.07 7.32 -35.56 -0.26 -0.33 16 3 C -0.22 -2.67 10.78 -39.80 -0.43 -3.10 16 4 C -0.18 -2.53 10.85 -39.38 -0.43 -2.96 16 5 C 0.07 1.17 6.81 -36.48 -0.25 0.92 16 6 C 0.14 2.56 7.01 -82.88 -0.58 1.98 16 7 N -0.27 -4.87 12.62 33.36 0.42 -4.44 16 8 N -0.36 -5.82 4.01 -68.20 -0.27 -6.10 16 9 C 0.10 1.16 11.46 59.85 0.69 1.85 16 10 C 0.07 1.20 9.08 -17.27 -0.16 1.04 16 11 C -0.24 -4.20 3.57 -104.70 -0.37 -4.57 16 12 C 0.12 2.16 5.86 -4.98 -0.03 2.13 16 13 N -0.52 -10.40 5.41 -232.38 -1.26 -11.66 16 14 C 0.04 0.71 5.90 -2.83 -0.02 0.69 16 15 C -0.14 -3.19 4.95 -24.91 -0.12 -3.31 16 16 C 0.25 6.35 0.88 -89.38 -0.08 6.27 16 17 O -0.58 -15.39 13.16 -35.23 -0.46 -15.86 16 18 C -0.53 -14.37 8.28 -34.44 -0.29 -14.65 16 19 H 0.06 1.62 7.79 -52.49 -0.41 1.22 16 20 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 21 N -0.90 -23.62 10.75 55.43 0.60 -23.02 16 22 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.06 1.38 5.57 -2.04 -0.01 1.37 16 27 O -0.16 -2.60 9.59 4.61 0.04 -2.56 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.18 2.81 4.75 -52.49 -0.25 2.56 16 37 H 0.08 1.39 6.66 -51.93 -0.35 1.04 16 38 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.04 0.60 5.57 -51.93 -0.29 0.31 16 41 H 0.05 1.14 6.29 -51.93 -0.33 0.82 16 42 H 0.08 1.81 7.53 -51.93 -0.39 1.42 16 43 H 0.38 9.95 7.56 45.56 0.34 10.29 16 44 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 45 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.06 1.32 5.60 -51.93 -0.29 1.03 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -31.38 369.64 -8.17 -39.55 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.73 Total: 13.90 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.05 Total: -11.15 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.51 Total: -45.22 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.42 Total: -18.42 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.38 -8.17 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592526198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.052 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds