Wall clock time and date at job start Tue Mar 31 2020 17:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34701 * 125.67034 * 2 1 4 4 C 1.40973 * 107.02997 * 179.76553 * 3 2 1 5 5 C 1.35909 * 106.74096 * 0.38122 * 4 3 2 6 6 C 1.47861 * 125.92858 * 179.88416 * 5 4 3 7 7 N 1.31803 * 126.07007 * 320.35419 * 6 5 4 8 8 N 1.40062 * 108.08583 * 179.97438 * 7 6 5 9 9 C 1.46506 * 125.91029 * 180.02562 * 8 7 6 10 10 C 1.35066 * 108.18260 * 359.73436 * 8 7 6 11 11 C 1.35036 * 108.02828 * 0.42912 * 10 8 7 12 12 C 1.50698 * 126.08046 * 179.83512 * 11 10 8 13 13 N 1.46892 * 109.47249 * 305.31592 * 12 11 10 14 14 C 1.47445 * 111.00294 * 74.12422 * 13 12 11 15 15 C 1.54319 * 107.23366 * 236.74073 * 14 13 12 16 16 C 1.55137 * 103.17609 * 337.63239 * 15 14 13 17 17 O 1.42905 * 110.98852 * 277.64637 * 16 15 14 18 18 C 1.50707 * 110.99226 * 153.83385 * 16 15 14 19 19 H 1.07999 * 119.99926 * 241.45317 * 18 16 15 20 20 C 1.37870 * 119.99929 * 61.44748 * 18 16 15 21 21 N 1.31510 * 120.00437 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99727 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47202 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47082 * 120.00316 * 22 20 18 25 25 H 1.48498 * 109.47244 * 239.99798 * 22 20 18 26 26 C 1.47851 * 111.00019 * 313.27833 * 13 12 11 27 27 O 1.34339 * 125.66845 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.47345 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47049 * 300.02399 * 1 2 3 30 30 H 1.09000 * 109.46841 * 60.01625 * 1 2 3 31 31 H 1.08001 * 126.48529 * 0.02562 * 3 2 1 32 32 H 1.07998 * 126.63118 * 180.23351 * 4 3 2 33 33 H 1.09001 * 109.46994 * 89.97471 * 9 8 7 34 34 H 1.08996 * 109.47315 * 209.97231 * 9 8 7 35 35 H 1.08997 * 109.46957 * 329.97298 * 9 8 7 36 36 H 1.07998 * 125.98944 * 180.29985 * 10 8 7 37 37 H 1.09002 * 109.46878 * 185.31090 * 12 11 10 38 38 H 1.08999 * 109.46752 * 65.31497 * 12 11 10 39 39 H 1.09001 * 109.88660 * 117.33866 * 14 13 12 40 40 H 1.08997 * 110.02043 * 356.22416 * 14 13 12 41 41 H 1.09003 * 110.70382 * 96.09889 * 15 14 13 42 42 H 1.09004 * 110.70569 * 219.15863 * 15 14 13 43 43 H 0.96697 * 113.99771 * 298.54319 * 17 16 15 44 44 H 0.97006 * 120.00404 * 180.02562 * 21 20 18 45 45 H 1.08994 * 110.37636 * 265.19744 * 26 13 12 46 46 H 1.09003 * 110.37017 * 27.54005 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0943 0.0000 4 6 3.6282 0.6437 0.0055 5 6 3.5832 -0.7146 -0.0001 6 6 4.7511 -1.6214 0.0003 7 7 5.8695 -1.4467 -0.6749 8 7 6.7168 -2.5275 -0.3999 9 6 8.0616 -2.7258 -0.9464 10 6 6.0822 -3.3521 0.4613 11 6 4.8663 -2.8266 0.7239 12 6 3.8210 -3.4192 1.6333 13 7 3.5333 -4.7979 1.2157 14 6 4.6332 -5.7046 1.5927 15 6 5.1207 -6.3937 0.3008 16 6 3.8999 -6.2701 -0.6483 17 8 2.9451 -7.3018 -0.3912 18 6 4.3340 -6.2868 -2.0914 19 1 4.1365 -5.4345 -2.7246 20 6 4.9834 -7.3900 -2.6032 21 7 5.2236 -8.4281 -1.8323 22 14 5.5222 -7.4104 -4.3917 23 1 5.1372 -6.1307 -5.0392 24 1 6.9962 -7.5768 -4.4628 25 1 4.8622 -8.5397 -5.0947 26 6 3.3374 -4.8783 -0.2476 27 8 2.2903 -1.0914 -0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5136 -0.8901 31 1 1.9615 2.1223 0.0004 32 1 4.5158 1.2590 0.0105 33 1 8.7940 -2.2596 -0.2872 34 1 8.2690 -3.7931 -1.0227 35 1 8.1223 -2.2722 -1.9356 36 1 6.4771 -4.2718 0.8670 37 1 2.9095 -2.8243 1.5753 38 1 4.1899 -3.4198 2.6590 39 1 4.2716 -6.4527 2.2982 40 1 5.4485 -5.1364 2.0403 41 1 5.9842 -5.8719 -0.1120 42 1 5.3585 -7.4408 0.4887 43 1 3.2852 -8.1961 -0.5312 44 1 5.6808 -9.2042 -2.1923 45 1 2.2774 -4.8129 -0.4927 46 1 3.8933 -4.0860 -0.7489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592526198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:01 Heat of formation + Delta-G solvation = 38.113383 kcal Electronic energy + Delta-G solvation = -29795.470748 eV Core-core repulsion = 25881.125786 eV Total energy + Delta-G solvation = -3914.344962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.57324 -42.39783 -39.95542 -36.75559 -34.85552 -34.20581 -34.16662 -32.74521 -32.13185 -30.64339 -29.90113 -28.86338 -27.35146 -26.39658 -25.00391 -23.19507 -22.29116 -21.81788 -21.54564 -21.19502 -20.68711 -19.01529 -18.30543 -17.30191 -17.04658 -16.92824 -16.75705 -16.51908 -15.99926 -15.66839 -15.57604 -15.14893 -15.07984 -14.38025 -14.14157 -14.02828 -13.89858 -13.82075 -13.78743 -13.63582 -13.39496 -13.36447 -13.25312 -13.04411 -12.77741 -12.69695 -12.64473 -12.48928 -12.27686 -12.09122 -11.80713 -11.60826 -11.09630 -10.98580 -10.62608 -10.56576 -10.07758 -9.59885 -9.21743 -8.94433 -8.23850 -6.38479 0.23494 0.87223 1.22725 1.31609 1.36975 1.45822 1.46636 1.83605 2.21596 2.34218 3.00148 3.25476 3.44602 3.62887 3.90744 3.97749 4.00070 4.04633 4.08871 4.17803 4.33318 4.37710 4.45842 4.48523 4.55428 4.61724 4.64414 4.70619 4.77348 4.80770 4.82520 4.85241 4.89494 5.03621 5.07584 5.12230 5.20609 5.30845 5.41089 5.50688 5.56773 5.62201 5.80908 5.93723 6.00237 6.14563 6.23183 6.33325 6.50645 6.65258 7.32821 7.48181 8.81244 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.004346 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.377286 B = 6441.514709 C = 6885.073491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.215 4.215 4 C -0.169 4.169 5 C 0.027 3.973 6 C 0.130 3.870 7 N -0.294 5.294 8 N -0.363 5.363 9 C 0.091 3.909 10 C 0.069 3.931 11 C -0.255 4.255 12 C 0.129 3.871 13 N -0.522 5.522 14 C 0.045 3.955 15 C -0.129 4.129 16 C 0.239 3.761 17 O -0.590 6.590 18 C -0.556 4.556 19 H 0.035 0.965 20 C 0.042 3.958 21 N -0.903 5.903 22 Si 0.948 3.052 23 H -0.283 1.283 24 H -0.270 1.270 25 H -0.277 1.277 26 C 0.076 3.924 27 O -0.184 6.184 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.183 0.817 32 H 0.158 0.842 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.191 0.809 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.372 0.628 44 H 0.270 0.730 45 H 0.040 0.960 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 15.101 6.717 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.234 4.234 4 C -0.190 4.190 5 C -0.024 4.024 6 C -0.034 4.034 7 N -0.120 5.120 8 N -0.145 5.145 9 C -0.048 4.048 10 C -0.077 4.077 11 C -0.267 4.267 12 C 0.000 4.000 13 N -0.244 5.244 14 C -0.083 4.083 15 C -0.168 4.168 16 C 0.199 3.801 17 O -0.397 6.397 18 C -0.594 4.594 19 H 0.053 0.947 20 C -0.160 4.160 21 N -0.543 5.543 22 Si 0.774 3.226 23 H -0.208 1.208 24 H -0.195 1.195 25 H -0.203 1.203 26 C -0.051 4.051 27 O -0.081 6.081 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.200 0.800 32 H 0.176 0.824 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.208 0.792 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.220 0.780 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.279 15.685 6.263 16.937 hybrid contribution 1.179 -1.005 -1.320 2.035 sum 2.458 14.680 4.943 15.684 Atomic orbital electron populations 1.20557 0.82205 1.04652 1.05611 1.23459 0.95647 0.83476 1.03574 1.21801 0.91249 1.00732 1.09613 1.21981 0.99561 0.92213 1.05204 1.18886 0.80682 0.91922 1.10885 1.19259 0.91524 0.94699 0.97876 1.77460 1.02301 1.09744 1.22524 1.48703 1.15100 1.15731 1.34983 1.22285 0.76609 1.04753 1.01172 1.22736 0.93454 0.97024 0.94517 1.20954 0.98428 0.98134 1.09226 1.20785 0.94607 0.87972 0.96613 1.63766 1.40753 1.06246 1.13658 1.22924 0.92224 0.95638 0.97485 1.23049 0.98675 1.00081 0.94974 1.19810 0.84870 0.83992 0.91441 1.86154 1.43114 1.18640 1.91837 1.21659 1.38496 1.02030 0.97215 0.94679 1.25495 0.94531 0.94848 1.01099 1.69802 1.41934 1.05852 1.36680 0.85671 0.78409 0.77641 0.80837 1.20828 1.19476 1.20280 1.22803 0.98594 0.96481 0.87271 1.84089 1.15843 1.36458 1.71676 0.90992 0.87033 0.87593 0.80010 0.82388 0.87780 0.87916 0.88833 0.79215 0.90965 0.88580 0.91195 0.91268 0.93036 0.92172 0.78002 0.92065 0.94110 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.41 71.24 0.74 -0.45 16 2 C -0.01 -0.27 7.32 24.87 0.18 -0.09 16 3 C -0.22 -4.97 10.78 22.13 0.24 -4.73 16 4 C -0.17 -4.76 10.85 22.40 0.24 -4.52 16 5 C 0.03 0.94 6.81 24.28 0.17 1.10 16 6 C 0.13 4.77 7.01 42.39 0.30 5.06 16 7 N -0.29 -10.62 12.62 -48.36 -0.61 -11.23 16 8 N -0.36 -11.43 4.01 -369.69 -1.48 -12.91 16 9 C 0.09 1.95 11.46 127.77 1.46 3.41 16 10 C 0.07 2.27 9.08 83.46 0.76 3.03 16 11 C -0.25 -9.01 3.57 -19.91 -0.07 -9.08 16 12 C 0.13 4.45 5.86 85.56 0.50 4.95 16 13 N -0.52 -20.86 5.41 -889.12 -4.81 -25.67 16 14 C 0.04 1.65 5.90 86.65 0.51 2.16 16 15 C -0.13 -5.69 4.95 31.77 0.16 -5.53 16 16 C 0.24 12.18 0.88 -9.99 -0.01 12.17 16 17 O -0.59 -32.03 13.16 -148.98 -1.96 -33.99 16 18 C -0.56 -30.86 8.28 25.60 0.21 -30.64 16 19 H 0.03 2.05 7.79 -2.91 -0.02 2.03 16 20 C 0.04 2.20 5.29 84.65 0.45 2.65 16 21 N -0.90 -47.43 10.75 21.44 0.23 -47.20 16 22 Si 0.95 42.58 29.54 68.60 2.03 44.61 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 C 0.08 3.62 5.57 86.94 0.48 4.10 16 27 O -0.18 -6.28 9.59 -6.44 -0.06 -6.34 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.19 5.64 4.75 -2.91 -0.01 5.63 16 37 H 0.07 2.58 6.66 -2.39 -0.02 2.56 16 38 H 0.10 2.80 7.91 -2.39 -0.02 2.78 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.07 2.11 5.57 -2.39 -0.01 2.10 16 41 H 0.05 2.24 6.29 -2.39 -0.02 2.23 16 42 H 0.06 2.83 7.53 -2.39 -0.02 2.82 16 43 H 0.37 20.11 7.56 -74.06 -0.56 19.55 16 44 H 0.27 13.40 8.31 -92.70 -0.77 12.63 16 45 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.04 2.20 5.60 -2.39 -0.01 2.19 16 Total: -1.00 -68.89 369.64 0.11 -68.78 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.46 Total: 40.35 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 6.32 Total: -16.40 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -6.67 Total: -97.01 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -2.02 Total: -40.33 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -68.89 0.11 -68.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592526198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.894 kcal (2) G-P(sol) polarization free energy of solvation -68.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds