Wall clock time and date at job start Tue Mar 31 2020 16:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00168 * 2 1 4 4 C 1.53006 * 109.46814 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47565 * 64.99940 * 4 3 2 6 6 C 1.46502 * 120.00141 * 270.00354 * 5 4 3 7 7 C 1.50703 * 109.46591 * 269.99430 * 6 5 4 8 8 H 1.07998 * 120.00197 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99882 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99387 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00237 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47147 * 89.99910 * 11 9 7 13 13 H 1.48497 * 109.47186 * 210.00390 * 11 9 7 14 14 H 1.48502 * 109.46767 * 330.00163 * 11 9 7 15 15 C 1.34779 * 120.00060 * 89.99801 * 5 4 3 16 16 O 1.21280 * 120.00114 * 180.02562 * 15 5 4 17 17 C 1.50703 * 119.99672 * 0.02562 * 15 5 4 18 18 C 1.50708 * 109.46671 * 180.02562 * 17 15 5 19 19 C 1.35110 * 125.68352 * 125.58425 * 18 17 15 20 20 N 1.36839 * 107.17263 * 180.02562 * 19 18 17 21 21 C 1.36492 * 132.56725 * 179.35207 * 20 19 18 22 22 C 1.34946 * 120.60813 * 180.02562 * 21 20 19 23 23 C 1.40466 * 120.30310 * 359.97438 * 22 21 20 24 24 C 1.36027 * 119.69338 * 359.97438 * 23 22 21 25 25 C 1.50703 * 120.33686 * 179.97438 * 24 23 22 26 26 C 1.37076 * 107.00365 * 359.58982 * 20 19 18 27 27 N 1.32563 * 108.03329 * 0.11084 * 26 20 19 28 28 H 1.08998 * 109.47567 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46536 * 299.99863 * 1 2 3 30 30 H 1.09001 * 109.46787 * 59.99646 * 1 2 3 31 31 H 1.08998 * 109.47215 * 60.00689 * 3 2 1 32 32 H 1.09000 * 109.47468 * 299.99832 * 3 2 1 33 33 H 1.09006 * 109.47063 * 304.99597 * 4 3 2 34 34 H 1.09005 * 109.46853 * 185.00151 * 4 3 2 35 35 H 1.09001 * 109.47156 * 29.99372 * 6 5 4 36 36 H 1.09000 * 109.47288 * 149.99969 * 6 5 4 37 37 H 0.97004 * 119.99340 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.47550 * 59.99917 * 17 15 5 39 39 H 1.09004 * 109.47268 * 299.99812 * 17 15 5 40 40 H 1.08000 * 126.41181 * 359.38898 * 19 18 17 41 41 H 1.08004 * 119.69103 * 359.97438 * 21 20 19 42 42 H 1.08003 * 119.84692 * 180.02562 * 22 21 20 43 43 H 1.08006 * 120.15540 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.47152 * 90.00165 * 25 24 23 45 45 H 1.09001 * 109.46980 * 330.00265 * 25 24 23 46 46 H 1.09004 * 109.47113 * 210.00246 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 3.9758 0.5642 -1.2526 6 6 4.1052 -0.8923 -1.3427 7 6 5.5010 -1.2981 -0.9449 8 1 6.2196 -0.5463 -0.6537 9 6 5.8603 -2.6292 -0.9516 10 7 4.9849 -3.5447 -1.3058 11 14 7.5901 -3.1323 -0.4578 12 1 7.6338 -3.3843 1.0049 13 1 7.9725 -4.3693 -1.1850 14 1 8.5393 -2.0430 -0.8010 15 6 4.2617 1.3335 -2.3217 16 8 4.6257 0.8200 -3.3584 17 6 4.1290 2.8318 -2.2289 18 6 4.5044 3.4521 -3.5502 19 6 3.7358 4.2984 -4.2702 20 7 4.4408 4.6253 -5.3965 21 6 4.1533 5.4219 -6.4670 22 6 5.0456 5.5767 -7.4675 23 6 6.2855 4.9184 -7.4195 24 6 6.5852 4.1224 -6.3580 25 6 7.9110 3.4089 -6.2920 26 6 5.6403 3.9658 -5.3242 27 7 5.6566 3.2660 -4.1984 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5680 0.8410 34 1 3.9787 2.1763 0.0890 35 1 3.3852 -1.3631 -0.6733 36 1 3.9120 -1.2116 -2.3668 37 1 5.2378 -4.4812 -1.3109 38 1 4.7915 3.2077 -1.4493 39 1 3.0985 3.0910 -1.9861 40 1 2.7458 4.6433 -4.0109 41 1 3.2027 5.9323 -6.5140 42 1 4.8055 6.2103 -8.3085 43 1 6.9980 5.0444 -8.2214 44 1 8.6400 4.0428 -5.7873 45 1 8.2569 3.1908 -7.3024 46 1 7.7949 2.4770 -5.7386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:36 Heat of formation + Delta-G solvation = 14.182487 kcal Electronic energy + Delta-G solvation = -28329.513485 eV Core-core repulsion = 24414.130801 eV Total energy + Delta-G solvation = -3915.382684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.72311 -39.03941 -37.65753 -37.23826 -34.68854 -34.44373 -32.65789 -31.78568 -30.20501 -29.46552 -28.05885 -27.06398 -26.44210 -25.82321 -22.98094 -22.71076 -22.61089 -21.90286 -20.46765 -18.30167 -17.43958 -16.98691 -16.60145 -16.28024 -16.10097 -15.80940 -15.57244 -15.30617 -14.85842 -14.72664 -14.27594 -14.22380 -14.04406 -13.70768 -13.27114 -12.90917 -12.74742 -12.71924 -12.40203 -12.11676 -11.83338 -11.78199 -11.71681 -11.60464 -11.53504 -11.36430 -11.09673 -10.80425 -10.72995 -10.55677 -10.29374 -9.99319 -9.77908 -9.44090 -9.38717 -8.80993 -8.46295 -8.24942 -7.72871 -7.45696 -5.86221 -3.89367 0.71957 1.30034 2.62287 2.92250 3.41213 3.47209 3.52370 3.55791 3.62153 4.06686 4.15025 4.22627 4.37255 4.59717 4.62446 4.73029 4.92481 5.15177 5.19527 5.25328 5.31513 5.36030 5.47124 5.50264 5.52120 5.52601 5.58941 5.65037 5.66982 5.69855 5.77035 5.81369 5.88639 5.90862 5.94668 6.09338 6.29419 6.31698 6.52499 6.72615 7.14162 7.39377 7.46103 7.70534 7.77459 8.10174 8.12553 8.45273 8.63635 9.10587 9.31703 9.74253 11.21793 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010234 B = 0.003657 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.375507 B = 7654.261149 C = 9854.143420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.594 5.594 6 C 0.252 3.748 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.507 3.493 16 O -0.519 6.519 17 C -0.065 4.065 18 C 0.090 3.910 19 C -0.101 4.101 20 N -0.362 5.362 21 C 0.045 3.955 22 C -0.141 4.141 23 C -0.124 4.124 24 C -0.032 4.032 25 C -0.108 4.108 26 C 0.219 3.781 27 N -0.449 5.449 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.260 0.740 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.180 0.820 41 H 0.158 0.842 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.050 21.665 -5.856 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.035 4.035 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.133 3.867 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.199 1.199 15 C 0.292 3.708 16 O -0.394 6.394 17 C -0.106 4.106 18 C -0.045 4.045 19 C -0.232 4.232 20 N -0.034 5.034 21 C -0.077 4.077 22 C -0.162 4.162 23 C -0.148 4.148 24 C -0.034 4.034 25 C -0.165 4.165 26 C -0.025 4.025 27 N -0.167 5.167 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.197 0.803 41 H 0.176 0.824 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.180 20.503 -6.132 22.018 hybrid contribution -0.241 0.484 0.054 0.543 sum -5.421 20.986 -6.078 22.511 Atomic orbital electron populations 1.22695 0.82167 1.02570 0.99019 1.88119 1.18604 1.26963 1.95105 1.23143 0.95543 0.85430 0.99361 1.21506 0.90998 0.99026 0.89851 1.48147 1.65002 1.09772 1.09683 1.19253 0.96551 0.72194 0.98663 1.21508 0.97572 0.92153 1.44772 0.92622 1.24911 0.97240 0.96465 0.95529 1.69959 1.34273 1.00844 1.48439 0.86554 0.84982 0.78019 0.78206 1.20795 1.21261 1.19920 1.19977 0.78828 0.87598 0.84381 1.90709 1.45004 1.74435 1.29252 1.20177 1.02672 0.94692 0.93098 1.20209 0.90932 0.96305 0.97012 1.22275 1.01118 1.09954 0.89816 1.42770 1.15128 1.30729 1.14797 1.21498 1.01486 0.96953 0.87755 1.20694 0.94152 1.02559 0.98801 1.20847 0.97317 0.98148 0.98491 1.19071 0.95492 0.97682 0.91167 1.20706 0.91791 1.01172 1.02849 1.20850 0.86916 0.97339 0.97367 1.70707 1.22451 1.19948 1.03617 0.89821 0.94718 0.94675 0.93126 0.93818 0.89023 0.90090 0.93785 0.94494 0.93003 0.87857 0.88439 0.80258 0.82439 0.83581 0.84387 0.90626 0.91068 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.42 9.53 -35.23 -0.34 -6.75 16 3 C 0.04 0.61 6.28 37.16 0.23 0.84 16 4 C 0.11 1.82 5.62 -4.04 -0.02 1.80 16 5 N -0.59 -13.11 2.42 -175.05 -0.42 -13.54 16 6 C 0.25 6.99 4.98 -5.19 -0.03 6.97 16 7 C -0.52 -15.56 9.39 -34.44 -0.32 -15.89 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.90 -27.93 13.29 55.43 0.74 -27.19 16 11 Si 0.89 22.93 29.54 -169.99 -5.02 17.91 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.27 -7.04 7.11 56.52 0.40 -6.63 16 15 C 0.51 11.21 7.66 -10.98 -0.08 11.13 16 16 O -0.52 -14.23 15.14 5.56 0.08 -14.15 16 17 C -0.07 -1.03 4.81 -29.03 -0.14 -1.17 16 18 C 0.09 1.55 5.85 -82.97 -0.49 1.06 16 19 C -0.10 -1.40 11.63 -16.43 -0.19 -1.59 16 20 N -0.36 -5.08 2.95 -62.66 -0.18 -5.27 16 21 C 0.05 0.45 10.95 -16.65 -0.18 0.27 16 22 C -0.14 -1.21 9.98 -39.91 -0.40 -1.61 16 23 C -0.12 -1.25 9.72 -39.54 -0.38 -1.63 16 24 C -0.03 -0.43 5.90 -104.40 -0.62 -1.05 16 25 C -0.11 -1.33 10.03 36.01 0.36 -0.96 16 26 C 0.22 3.66 7.52 -156.04 -1.17 2.49 16 27 N -0.45 -8.89 10.66 -9.00 -0.10 -8.99 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.57 7.30 -51.93 -0.38 0.19 16 33 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 34 H 0.08 1.02 6.44 -51.93 -0.33 0.68 16 35 H 0.04 1.26 7.12 -51.93 -0.37 0.89 16 36 H 0.04 1.17 7.42 -51.93 -0.39 0.79 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.10 1.44 7.40 -51.93 -0.38 1.06 16 39 H 0.10 1.15 7.22 -51.93 -0.38 0.78 16 40 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 46 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -40.62 387.84 -8.65 -49.27 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.84 Total: -1.02 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -2.42 Total: 3.87 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.03 Total: -54.98 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.25 Total: -20.90 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.62 -8.65 -49.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.455 kcal (2) G-P(sol) polarization free energy of solvation -40.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds