Wall clock time and date at job start Tue Mar 31 2020 16:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00168 * 2 1 4 4 C 1.53006 * 109.46814 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47565 * 64.99940 * 4 3 2 6 6 C 1.46502 * 120.00141 * 270.00354 * 5 4 3 7 7 C 1.50703 * 109.46591 * 269.99430 * 6 5 4 8 8 H 1.07998 * 120.00197 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99882 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99387 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00237 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47147 * 89.99910 * 11 9 7 13 13 H 1.48497 * 109.47186 * 210.00390 * 11 9 7 14 14 H 1.48502 * 109.46767 * 330.00163 * 11 9 7 15 15 C 1.34779 * 120.00060 * 89.99801 * 5 4 3 16 16 O 1.21280 * 120.00114 * 180.02562 * 15 5 4 17 17 C 1.50703 * 119.99672 * 0.02562 * 15 5 4 18 18 C 1.50708 * 109.46671 * 180.02562 * 17 15 5 19 19 C 1.35110 * 125.68352 * 125.58425 * 18 17 15 20 20 N 1.36839 * 107.17263 * 180.02562 * 19 18 17 21 21 C 1.36492 * 132.56725 * 179.35207 * 20 19 18 22 22 C 1.34946 * 120.60813 * 180.02562 * 21 20 19 23 23 C 1.40466 * 120.30310 * 359.97438 * 22 21 20 24 24 C 1.36027 * 119.69338 * 359.97438 * 23 22 21 25 25 C 1.50703 * 120.33686 * 179.97438 * 24 23 22 26 26 C 1.37076 * 107.00365 * 359.58982 * 20 19 18 27 27 N 1.32563 * 108.03329 * 0.11084 * 26 20 19 28 28 H 1.08998 * 109.47567 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46536 * 299.99863 * 1 2 3 30 30 H 1.09001 * 109.46787 * 59.99646 * 1 2 3 31 31 H 1.08998 * 109.47215 * 60.00689 * 3 2 1 32 32 H 1.09000 * 109.47468 * 299.99832 * 3 2 1 33 33 H 1.09006 * 109.47063 * 304.99597 * 4 3 2 34 34 H 1.09005 * 109.46853 * 185.00151 * 4 3 2 35 35 H 1.09001 * 109.47156 * 29.99372 * 6 5 4 36 36 H 1.09000 * 109.47288 * 149.99969 * 6 5 4 37 37 H 0.97004 * 119.99340 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.47550 * 59.99917 * 17 15 5 39 39 H 1.09004 * 109.47268 * 299.99812 * 17 15 5 40 40 H 1.08000 * 126.41181 * 359.38898 * 19 18 17 41 41 H 1.08004 * 119.69103 * 359.97438 * 21 20 19 42 42 H 1.08003 * 119.84692 * 180.02562 * 22 21 20 43 43 H 1.08006 * 120.15540 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.47152 * 90.00165 * 25 24 23 45 45 H 1.09001 * 109.46980 * 330.00265 * 25 24 23 46 46 H 1.09004 * 109.47113 * 210.00246 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 3.9758 0.5642 -1.2526 6 6 4.1052 -0.8923 -1.3427 7 6 5.5010 -1.2981 -0.9449 8 1 6.2196 -0.5463 -0.6537 9 6 5.8603 -2.6292 -0.9516 10 7 4.9849 -3.5447 -1.3058 11 14 7.5901 -3.1323 -0.4578 12 1 7.6338 -3.3843 1.0049 13 1 7.9725 -4.3693 -1.1850 14 1 8.5393 -2.0430 -0.8010 15 6 4.2617 1.3335 -2.3217 16 8 4.6257 0.8200 -3.3584 17 6 4.1290 2.8318 -2.2289 18 6 4.5044 3.4521 -3.5502 19 6 3.7358 4.2984 -4.2702 20 7 4.4408 4.6253 -5.3965 21 6 4.1533 5.4219 -6.4670 22 6 5.0456 5.5767 -7.4675 23 6 6.2855 4.9184 -7.4195 24 6 6.5852 4.1224 -6.3580 25 6 7.9110 3.4089 -6.2920 26 6 5.6403 3.9658 -5.3242 27 7 5.6566 3.2660 -4.1984 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5680 0.8410 34 1 3.9787 2.1763 0.0890 35 1 3.3852 -1.3631 -0.6733 36 1 3.9120 -1.2116 -2.3668 37 1 5.2378 -4.4812 -1.3109 38 1 4.7915 3.2077 -1.4493 39 1 3.0985 3.0910 -1.9861 40 1 2.7458 4.6433 -4.0109 41 1 3.2027 5.9323 -6.5140 42 1 4.8055 6.2103 -8.3085 43 1 6.9980 5.0444 -8.2214 44 1 8.6400 4.0428 -5.7873 45 1 8.2569 3.1908 -7.3024 46 1 7.7949 2.4770 -5.7386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:35 Heat of formation + Delta-G solvation = -14.325685 kcal Electronic energy + Delta-G solvation = -28330.749692 eV Core-core repulsion = 24414.130801 eV Total energy + Delta-G solvation = -3916.618891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.71456 -40.66399 -38.75573 -38.35621 -36.42506 -35.42566 -34.80888 -33.01089 -31.33309 -30.92211 -29.43906 -28.22434 -27.80904 -27.04327 -24.88339 -23.91790 -23.71656 -22.93733 -21.65361 -19.84749 -18.62099 -18.42742 -18.15048 -17.69722 -17.39041 -16.99739 -16.72569 -16.53550 -16.41548 -16.06454 -15.83528 -15.40160 -15.05668 -14.91228 -14.43300 -14.36370 -14.16896 -13.97717 -13.58470 -13.55332 -13.30499 -13.08238 -12.98953 -12.82446 -12.72475 -12.64767 -12.54901 -12.49796 -12.40166 -12.16940 -11.87347 -11.66016 -11.51146 -10.90426 -10.60852 -10.54115 -10.45431 -9.55654 -9.32880 -8.67048 -8.17966 -6.32542 -0.11824 0.39126 1.33551 1.37956 1.48433 1.71973 1.89406 1.95607 2.36824 2.52044 2.65491 3.03573 3.10947 3.27213 3.49498 3.76929 3.92545 4.00240 4.06371 4.19382 4.29690 4.31840 4.35674 4.42095 4.51943 4.53822 4.58115 4.59348 4.66725 4.71505 4.73404 4.83459 4.89509 4.98200 5.02794 5.10026 5.20266 5.24410 5.31148 5.39440 5.62365 5.66194 5.71760 5.94358 6.13972 6.24969 6.41631 6.76817 6.91876 7.05572 7.33017 7.62408 8.88878 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010234 B = 0.003657 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.375507 B = 7654.261149 C = 9854.143420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.420 6.420 3 C 0.045 3.955 4 C 0.102 3.898 5 N -0.599 5.599 6 C 0.276 3.724 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.005 3.995 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.260 1.260 13 H -0.280 1.280 14 H -0.276 1.276 15 C 0.497 3.503 16 O -0.587 6.587 17 C -0.046 4.046 18 C 0.044 3.956 19 C -0.088 4.088 20 N -0.368 5.368 21 C 0.036 3.964 22 C -0.136 4.136 23 C -0.098 4.098 24 C -0.083 4.083 25 C -0.100 4.100 26 C 0.193 3.807 27 N -0.519 5.519 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.028 0.972 36 H -0.019 1.019 37 H 0.265 0.735 38 H 0.122 0.878 39 H 0.145 0.855 40 H 0.225 0.775 41 H 0.201 0.799 42 H 0.194 0.806 43 H 0.173 0.827 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 25.553 -6.319 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.340 6.340 3 C -0.032 4.032 4 C -0.020 4.020 5 N -0.330 5.330 6 C 0.155 3.845 7 C -0.580 4.580 8 H 0.067 0.933 9 C -0.194 4.194 10 N -0.570 5.570 11 Si 0.791 3.209 12 H -0.184 1.184 13 H -0.205 1.205 14 H -0.201 1.201 15 C 0.285 3.715 16 O -0.467 6.467 17 C -0.086 4.086 18 C -0.089 4.089 19 C -0.219 4.219 20 N -0.039 5.039 21 C -0.085 4.085 22 C -0.156 4.156 23 C -0.121 4.121 24 C -0.085 4.085 25 C -0.157 4.157 26 C -0.051 4.051 27 N -0.239 5.239 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.046 0.954 36 H -0.001 1.001 37 H 0.074 0.926 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.241 0.759 41 H 0.218 0.782 42 H 0.211 0.789 43 H 0.190 0.810 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.218 24.440 -6.546 26.054 hybrid contribution 0.017 -0.642 0.051 0.644 sum -6.200 23.798 -6.495 25.435 Atomic orbital electron populations 1.22839 0.80122 1.02889 1.00881 1.88056 1.21098 1.29292 1.95540 1.23223 0.93164 0.84732 1.02113 1.21921 0.93514 1.00286 0.86281 1.48128 1.65062 1.07650 1.12166 1.18535 0.95223 0.76227 0.94527 1.21785 0.98442 0.92575 1.45199 0.93270 1.25880 1.01898 0.96392 0.95206 1.70091 1.36536 1.01313 1.49030 0.85429 0.79023 0.77457 0.78966 1.18444 1.20491 1.20112 1.21151 0.76979 0.90354 0.83012 1.90668 1.47897 1.76271 1.31869 1.20145 1.05869 0.88829 0.93792 1.20553 0.91563 0.98491 0.98244 1.22819 1.01843 1.08376 0.88900 1.43028 1.14251 1.30849 1.15756 1.22421 1.03534 0.95941 0.86557 1.21337 0.92835 1.01873 0.99561 1.21381 0.98345 0.95144 0.97226 1.19356 0.95823 1.00778 0.92545 1.20612 0.92348 0.99097 1.03680 1.21247 0.88705 0.97728 0.97432 1.70571 1.24781 1.22593 1.05997 0.90500 0.91796 0.93671 0.88686 0.92331 0.90855 0.85595 0.95400 1.00119 0.92596 0.86020 0.83689 0.75859 0.78242 0.78871 0.80975 0.90062 0.88415 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.42 -14.59 9.53 -148.98 -1.42 -16.01 16 3 C 0.04 1.16 6.28 71.98 0.45 1.61 16 4 C 0.10 3.29 5.62 86.38 0.49 3.78 16 5 N -0.60 -27.63 2.42 -826.13 -2.00 -29.62 16 6 C 0.28 16.47 4.98 85.63 0.43 16.90 16 7 C -0.54 -34.15 9.39 25.60 0.24 -33.91 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.00 0.28 5.46 84.65 0.46 0.75 16 10 N -0.93 -60.57 13.29 21.45 0.28 -60.28 16 11 Si 0.97 48.56 29.54 68.60 2.03 50.59 16 12 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 14 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 15 C 0.50 23.00 7.66 87.66 0.67 23.67 16 16 O -0.59 -34.89 15.14 -3.03 -0.05 -34.94 16 17 C -0.05 -1.43 4.81 29.11 0.14 -1.29 16 18 C 0.04 1.55 5.85 41.59 0.24 1.79 16 19 C -0.09 -2.30 11.63 83.19 0.97 -1.34 16 20 N -0.37 -9.75 2.95 -352.15 -1.04 -10.78 16 21 C 0.04 0.58 10.95 83.21 0.91 1.49 16 22 C -0.14 -1.72 9.98 22.06 0.22 -1.50 16 23 C -0.10 -1.68 9.72 22.30 0.22 -1.46 16 24 C -0.08 -2.26 5.90 -19.72 -0.12 -2.37 16 25 C -0.10 -2.62 10.03 71.24 0.71 -1.91 16 26 C 0.19 6.65 7.52 134.10 1.01 7.66 16 27 N -0.52 -21.88 10.66 -182.40 -1.94 -23.82 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.34 7.30 -2.39 -0.02 1.32 16 33 H 0.07 2.62 8.07 -2.38 -0.02 2.60 16 34 H 0.13 2.85 6.44 -2.38 -0.02 2.83 16 35 H 0.03 1.72 7.12 -2.39 -0.02 1.71 16 36 H -0.02 -1.35 7.42 -2.39 -0.02 -1.37 16 37 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 38 H 0.12 3.24 7.40 -2.39 -0.02 3.22 16 39 H 0.15 2.96 7.22 -2.39 -0.02 2.95 16 40 H 0.22 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.19 0.63 8.06 -2.91 -0.02 0.60 16 43 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.10 1.87 8.09 -2.39 -0.02 1.85 16 46 H 0.04 1.32 8.10 -2.38 -0.02 1.30 16 Total: -1.00 -102.28 387.84 5.13 -97.14 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.98 Total: 11.92 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 8.29 Total: 15.82 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -4.70 Total: -124.51 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -1.46 Total: -50.95 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -102.28 5.13 -97.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.819 kcal (2) G-P(sol) polarization free energy of solvation -102.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds