Wall clock time and date at job start Tue Mar 31 2020 16:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99850 * 2 1 4 4 C 1.52993 * 109.46989 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47183 * 180.02562 * 4 3 2 6 6 C 1.36530 * 124.77238 * 90.02811 * 5 4 3 7 7 C 1.50697 * 125.38510 * 359.97438 * 6 5 4 8 8 C 1.34324 * 109.23408 * 179.97438 * 6 5 4 9 9 C 1.46968 * 106.37814 * 359.97438 * 8 6 5 10 10 C 1.41846 * 127.08074 * 179.73765 * 9 8 6 11 11 C 1.38073 * 119.99911 * 43.92625 * 10 9 8 12 12 C 1.43207 * 119.99997 * 189.61144 * 11 10 9 13 13 N 9.08522 * 154.59621 * 139.22946 * 3 1 2 14 14 C 1.46948 * 120.00415 * 9.61750 * 11 10 9 15 15 O 1.21681 * 119.99701 * 6.15252 * 14 11 10 16 16 N 1.34768 * 120.00437 * 186.15769 * 14 11 10 17 17 C 1.46501 * 120.00349 * 179.97438 * 16 14 11 18 18 C 1.50702 * 109.47266 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99896 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99564 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00522 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99657 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 359.97438 * 22 20 18 24 24 H 1.48510 * 109.47056 * 119.99749 * 22 20 18 25 25 H 1.48493 * 109.47468 * 239.99462 * 22 20 18 26 26 C 1.34573 * 124.77376 * 270.02475 * 5 4 3 27 27 C 1.50704 * 125.95019 * 0.02562 * 26 5 4 28 28 H 1.09008 * 109.47113 * 299.99881 * 1 2 3 29 29 H 1.08998 * 109.47043 * 59.99300 * 1 2 3 30 30 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46958 * 60.00339 * 3 2 1 32 32 H 1.08992 * 109.47210 * 300.00212 * 3 2 1 33 33 H 1.09001 * 109.47182 * 60.00059 * 4 3 2 34 34 H 1.09001 * 109.47378 * 300.00019 * 4 3 2 35 35 H 1.09007 * 109.47688 * 270.00483 * 7 6 5 36 36 H 1.09004 * 109.47282 * 29.99884 * 7 6 5 37 37 H 1.09000 * 109.47752 * 150.00190 * 7 6 5 38 38 H 1.08001 * 126.81405 * 180.02562 * 8 6 5 39 39 H 1.08001 * 119.99783 * 223.92681 * 10 9 8 40 40 H 0.97001 * 120.00007 * 359.97438 * 16 14 11 41 41 H 1.09000 * 109.47226 * 300.00508 * 17 16 14 42 42 H 1.09006 * 109.46743 * 60.00313 * 17 16 14 43 43 H 0.97002 * 120.00559 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.46967 * 270.00149 * 27 26 5 45 45 H 1.08999 * 109.46953 * 30.00244 * 27 26 5 46 46 H 1.09000 * 109.46913 * 149.99682 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 4.4480 3.2339 1.1231 7 6 4.2395 2.7662 2.5404 8 6 4.9749 4.4161 0.7638 9 6 4.9846 4.4360 -0.7057 10 6 5.4460 5.4833 -1.5438 11 6 6.6344 6.1248 -1.2564 12 6 6.9999 7.3097 -1.9727 13 7 7.2853 8.2508 -2.5452 14 6 7.5242 5.5916 -0.2156 15 8 7.2704 4.5262 0.3146 16 7 8.6214 6.2826 0.1519 17 6 9.5082 5.7513 1.1899 18 6 10.6516 6.7076 1.4115 19 1 10.7116 7.6200 0.8369 20 6 11.6213 6.4175 2.3478 21 7 11.5480 5.3066 3.0479 22 14 13.0383 7.6031 2.6230 23 1 12.8904 8.7701 1.7168 24 1 13.0288 8.0670 4.0338 25 1 14.3225 6.9146 2.3371 26 6 4.4435 3.2247 -1.1038 27 6 4.2407 2.7711 -2.5266 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 3.2504 3.0716 2.8821 36 1 4.3178 1.6797 2.5797 37 1 4.9991 3.2087 3.1847 38 1 5.3232 5.1968 1.4238 39 1 4.8676 5.7789 -2.4067 40 1 8.8239 7.1318 -0.2709 41 1 8.9497 5.6308 2.1182 42 1 9.8997 4.7845 0.8733 43 1 12.2300 5.1027 3.7069 44 1 5.1305 2.2434 -2.8699 45 1 3.3806 2.1034 -2.5759 46 1 4.0644 3.6384 -3.1628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787619116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:49 Heat of formation + Delta-G solvation = 10.381934 kcal Electronic energy + Delta-G solvation = -27729.227104 eV Core-core repulsion = 23813.679616 eV Total energy + Delta-G solvation = -3915.547488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34416 -38.93791 -38.29551 -36.32296 -34.75561 -33.80137 -33.02025 -32.27591 -31.88497 -29.27157 -28.87125 -27.40250 -26.47439 -25.24521 -23.64978 -23.01903 -22.02965 -20.50805 -19.89189 -18.60367 -17.97184 -17.01158 -16.51308 -16.27240 -16.06561 -15.71635 -15.11253 -14.75825 -14.55839 -14.37047 -14.31214 -14.22513 -13.67124 -13.36876 -13.20101 -13.13306 -12.97072 -12.88003 -12.72129 -12.53644 -12.31857 -12.27496 -11.97612 -11.93665 -11.87203 -11.79898 -11.64233 -11.49917 -11.39712 -10.89949 -10.86489 -10.27507 -10.20209 -9.68974 -9.31755 -9.01174 -8.68664 -7.92951 -7.66243 -7.43009 -6.12464 -4.18105 0.74673 2.31545 2.57385 2.88023 3.07693 3.27178 3.34515 3.37409 3.38802 3.57867 4.10069 4.17725 4.28559 4.35551 4.44910 4.52570 4.68420 4.82782 4.86104 4.87028 4.90393 5.05729 5.12807 5.20036 5.24044 5.25562 5.27442 5.37380 5.41616 5.59172 5.64254 5.71031 5.79992 5.99160 6.07079 6.14611 6.45198 6.50797 6.57418 7.11238 7.32006 7.36987 7.42544 7.50935 7.58074 7.71578 7.74262 8.02233 8.69950 8.84596 9.17132 9.48458 10.97664 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002697 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.834659 B =10379.251589 C =11803.682356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.048 3.952 4 C 0.104 3.896 5 N -0.433 5.433 6 C -0.008 4.008 7 C -0.081 4.081 8 C -0.081 4.081 9 C -0.175 4.175 10 C 0.098 3.902 11 C -0.144 4.144 12 C 0.259 3.741 13 N -0.432 5.432 14 C 0.549 3.451 15 O -0.523 6.523 16 N -0.709 5.709 17 C 0.253 3.747 18 C -0.541 4.541 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.901 3.099 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.072 3.928 27 C -0.090 4.090 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.387 0.613 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.871 -9.720 -7.326 26.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.030 4.030 4 C -0.019 4.019 5 N -0.112 5.112 6 C -0.113 4.113 7 C -0.138 4.138 8 C -0.105 4.105 9 C -0.183 4.183 10 C 0.073 3.927 11 C -0.152 4.152 12 C -0.055 4.055 13 N -0.109 5.109 14 C 0.333 3.667 15 O -0.402 6.402 16 N -0.357 5.357 17 C 0.132 3.868 18 C -0.580 4.580 19 H 0.080 0.920 20 C -0.139 4.139 21 N -0.524 5.524 22 Si 0.729 3.271 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.043 4.043 27 C -0.148 4.148 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.219 0.781 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.478 -9.641 -7.568 26.485 hybrid contribution 0.813 0.900 0.230 1.234 sum -22.665 -8.742 -7.338 25.376 Atomic orbital electron populations 1.22776 0.80239 1.03041 1.00262 1.87813 1.20318 1.27128 1.95542 1.22838 0.93468 0.85199 1.01468 1.21488 0.91692 0.82970 1.05741 1.43079 1.48870 1.13883 1.05399 1.19986 1.09575 0.93719 0.88034 1.20281 1.02261 1.00897 0.90361 1.21582 0.99506 0.96833 0.92532 1.18151 1.10990 0.95538 0.93629 1.21049 0.89562 0.88991 0.93141 1.18563 0.98497 0.94824 1.03283 1.25826 0.93599 0.92953 0.93134 1.81296 1.08150 1.11534 1.09940 1.17584 0.81553 0.85309 0.82214 1.90862 1.72834 1.21473 1.54995 1.46488 1.24935 1.23459 1.40806 1.19090 0.87475 0.94897 0.85291 1.21295 1.08237 1.06427 1.22011 0.91994 1.24921 0.98105 0.95509 0.95390 1.69977 1.34837 1.23713 1.23829 0.86394 0.81810 0.80848 0.78096 1.19642 1.20788 1.20817 1.20604 1.02388 0.92784 0.88568 1.20427 1.02357 1.02239 0.89748 0.93821 0.93872 0.89267 0.92381 0.92586 0.88543 0.88281 0.91901 0.92200 0.89877 0.84273 0.85212 0.78059 0.95289 0.95405 0.92593 0.90357 0.91700 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.16 10.70 -35.23 -0.38 -3.54 16 3 C 0.05 0.36 6.26 37.15 0.23 0.59 16 4 C 0.10 0.89 5.73 -4.04 -0.02 0.87 16 5 N -0.43 -4.95 2.68 -107.51 -0.29 -5.23 16 6 C -0.01 -0.11 6.84 -81.88 -0.56 -0.67 16 7 C -0.08 -0.87 10.04 36.00 0.36 -0.51 16 8 C -0.08 -1.24 7.79 -37.43 -0.29 -1.53 16 9 C -0.18 -2.41 4.71 -104.88 -0.49 -2.91 16 10 C 0.10 1.24 9.31 -38.26 -0.36 0.88 16 11 C -0.14 -2.26 5.87 -104.50 -0.61 -2.88 16 12 C 0.26 4.15 14.21 -22.41 -0.32 3.84 16 13 N -0.43 -7.53 18.55 41.91 0.78 -6.76 16 14 C 0.55 10.97 7.34 -12.74 -0.09 10.88 16 15 O -0.52 -11.51 12.09 5.21 0.06 -11.45 16 16 N -0.71 -15.70 5.50 -62.71 -0.34 -16.05 16 17 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 18 C -0.54 -15.11 9.28 -34.44 -0.32 -15.43 16 19 H 0.06 1.67 7.60 -52.49 -0.40 1.27 16 20 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 22 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.07 0.83 6.95 -81.29 -0.56 0.26 16 27 C -0.09 -0.71 9.63 36.01 0.35 -0.36 16 28 H 0.04 0.20 8.14 -51.92 -0.42 -0.22 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.75 7.50 -51.93 -0.39 0.36 16 34 H 0.10 0.84 6.87 -51.93 -0.36 0.49 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.58 6.92 -51.93 -0.36 0.22 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.14 2.29 7.70 -52.49 -0.40 1.89 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.39 8.11 7.21 -40.82 -0.29 7.81 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.40 7.59 -51.93 -0.39 0.01 16 46 H 0.08 0.52 7.95 -51.93 -0.41 0.11 16 LS Contribution 396.62 15.07 5.98 5.98 Total: -1.00 -33.74 396.62 -6.98 -40.72 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.80 Total: 2.62 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.71 Total: 2.77 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.88 Total: -53.49 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.31 Total: -14.98 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.74 -6.98 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.101 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds