Wall clock time and date at job start Tue Mar 31 2020 16:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99850 * 2 1 4 4 C 1.52993 * 109.46989 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47183 * 180.02562 * 4 3 2 6 6 C 1.36530 * 124.77238 * 90.02811 * 5 4 3 7 7 C 1.50697 * 125.38510 * 359.97438 * 6 5 4 8 8 C 1.34324 * 109.23408 * 179.97438 * 6 5 4 9 9 C 1.46968 * 106.37814 * 359.97438 * 8 6 5 10 10 C 1.41846 * 127.08074 * 179.73765 * 9 8 6 11 11 C 1.38073 * 119.99911 * 43.92625 * 10 9 8 12 12 C 1.43207 * 119.99997 * 189.61144 * 11 10 9 13 13 N 9.08522 * 154.59621 * 139.22946 * 3 1 2 14 14 C 1.46948 * 120.00415 * 9.61750 * 11 10 9 15 15 O 1.21681 * 119.99701 * 6.15252 * 14 11 10 16 16 N 1.34768 * 120.00437 * 186.15769 * 14 11 10 17 17 C 1.46501 * 120.00349 * 179.97438 * 16 14 11 18 18 C 1.50702 * 109.47266 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99896 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99564 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00522 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99657 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 359.97438 * 22 20 18 24 24 H 1.48510 * 109.47056 * 119.99749 * 22 20 18 25 25 H 1.48493 * 109.47468 * 239.99462 * 22 20 18 26 26 C 1.34573 * 124.77376 * 270.02475 * 5 4 3 27 27 C 1.50704 * 125.95019 * 0.02562 * 26 5 4 28 28 H 1.09008 * 109.47113 * 299.99881 * 1 2 3 29 29 H 1.08998 * 109.47043 * 59.99300 * 1 2 3 30 30 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46958 * 60.00339 * 3 2 1 32 32 H 1.08992 * 109.47210 * 300.00212 * 3 2 1 33 33 H 1.09001 * 109.47182 * 60.00059 * 4 3 2 34 34 H 1.09001 * 109.47378 * 300.00019 * 4 3 2 35 35 H 1.09007 * 109.47688 * 270.00483 * 7 6 5 36 36 H 1.09004 * 109.47282 * 29.99884 * 7 6 5 37 37 H 1.09000 * 109.47752 * 150.00190 * 7 6 5 38 38 H 1.08001 * 126.81405 * 180.02562 * 8 6 5 39 39 H 1.08001 * 119.99783 * 223.92681 * 10 9 8 40 40 H 0.97001 * 120.00007 * 359.97438 * 16 14 11 41 41 H 1.09000 * 109.47226 * 300.00508 * 17 16 14 42 42 H 1.09006 * 109.46743 * 60.00313 * 17 16 14 43 43 H 0.97002 * 120.00559 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.46967 * 270.00149 * 27 26 5 45 45 H 1.08999 * 109.46953 * 30.00244 * 27 26 5 46 46 H 1.09000 * 109.46913 * 149.99682 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 4.4480 3.2339 1.1231 7 6 4.2395 2.7662 2.5404 8 6 4.9749 4.4161 0.7638 9 6 4.9846 4.4360 -0.7057 10 6 5.4460 5.4833 -1.5438 11 6 6.6344 6.1248 -1.2564 12 6 6.9999 7.3097 -1.9727 13 7 7.2853 8.2508 -2.5452 14 6 7.5242 5.5916 -0.2156 15 8 7.2704 4.5262 0.3146 16 7 8.6214 6.2826 0.1519 17 6 9.5082 5.7513 1.1899 18 6 10.6516 6.7076 1.4115 19 1 10.7116 7.6200 0.8369 20 6 11.6213 6.4175 2.3478 21 7 11.5480 5.3066 3.0479 22 14 13.0383 7.6031 2.6230 23 1 12.8904 8.7701 1.7168 24 1 13.0288 8.0670 4.0338 25 1 14.3225 6.9146 2.3371 26 6 4.4435 3.2247 -1.1038 27 6 4.2407 2.7711 -2.5266 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 3.2504 3.0716 2.8821 36 1 4.3178 1.6797 2.5797 37 1 4.9991 3.2087 3.1847 38 1 5.3232 5.1968 1.4238 39 1 4.8676 5.7789 -2.4067 40 1 8.8239 7.1318 -0.2709 41 1 8.9497 5.6308 2.1182 42 1 9.8997 4.7845 0.8733 43 1 12.2300 5.1027 3.7069 44 1 5.1305 2.2434 -2.8699 45 1 3.3806 2.1034 -2.5759 46 1 4.0644 3.6384 -3.1628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787619116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:48 Heat of formation + Delta-G solvation = -11.424215 kcal Electronic energy + Delta-G solvation = -27730.172690 eV Core-core repulsion = 23813.679616 eV Total energy + Delta-G solvation = -3916.493074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.33121 -40.47005 -38.87967 -37.64264 -36.30484 -35.26245 -34.28944 -33.88606 -32.90585 -30.11881 -29.90304 -29.06220 -27.17088 -26.37021 -24.91871 -24.24503 -23.19797 -22.11791 -20.92356 -20.09907 -19.09352 -18.18957 -17.64801 -17.16089 -17.06468 -16.83865 -16.48460 -16.11648 -16.06122 -15.77645 -15.35128 -15.19706 -14.66865 -14.62521 -14.49754 -14.13590 -14.04840 -13.96185 -13.85549 -13.68649 -13.63711 -13.38735 -13.31286 -13.29292 -12.89809 -12.78021 -12.73765 -12.53827 -12.46312 -12.33292 -12.24775 -12.16666 -11.46314 -10.95651 -10.80473 -10.71680 -10.44603 -9.73586 -8.88453 -8.50342 -8.29860 -6.45254 -0.37759 1.34155 1.40148 1.40844 1.54477 1.60767 1.77446 1.78556 2.13972 2.32955 2.66833 2.76979 2.96329 3.04332 3.05827 3.70059 3.87531 3.92035 3.95471 4.09550 4.22629 4.29658 4.36070 4.46080 4.49625 4.54801 4.58581 4.66003 4.76041 4.82468 4.82661 4.87181 4.88558 5.01736 5.10737 5.15449 5.17533 5.30293 5.41715 5.45441 5.51295 5.72510 5.87367 6.04719 6.07886 6.29445 6.49069 6.49507 6.65150 6.95480 7.23457 7.54030 8.81975 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002697 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.834659 B =10379.251589 C =11803.682356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.056 3.944 4 C 0.100 3.900 5 N -0.431 5.431 6 C -0.014 4.014 7 C -0.079 4.079 8 C -0.116 4.116 9 C -0.217 4.217 10 C 0.152 3.848 11 C -0.182 4.182 12 C 0.281 3.719 13 N -0.463 5.463 14 C 0.551 3.449 15 O -0.549 6.549 16 N -0.718 5.718 17 C 0.275 3.725 18 C -0.560 4.560 19 H 0.070 0.930 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.979 3.021 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.097 3.903 27 C -0.093 4.093 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.181 0.819 40 H 0.393 0.607 41 H -0.005 1.005 42 H -0.008 1.008 43 H 0.270 0.730 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.738 -10.269 -9.227 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.021 4.021 4 C -0.022 4.022 5 N -0.108 5.108 6 C -0.120 4.120 7 C -0.136 4.136 8 C -0.139 4.139 9 C -0.225 4.225 10 C 0.128 3.872 11 C -0.190 4.190 12 C -0.032 4.032 13 N -0.140 5.140 14 C 0.338 3.662 15 O -0.429 6.429 16 N -0.366 5.366 17 C 0.153 3.847 18 C -0.598 4.598 19 H 0.088 0.912 20 C -0.191 4.191 21 N -0.563 5.563 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.201 1.201 26 C -0.020 4.020 27 C -0.150 4.150 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.198 0.802 40 H 0.226 0.774 41 H 0.013 0.987 42 H 0.010 0.990 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -25.388 -10.196 -9.487 28.957 hybrid contribution 1.145 0.801 0.880 1.651 sum -24.243 -9.395 -8.607 27.388 Atomic orbital electron populations 1.22959 0.78809 1.04111 1.01019 1.87782 1.21889 1.27280 1.95675 1.22702 0.92320 0.85239 1.01883 1.21686 0.92666 0.81309 1.06513 1.43313 1.48066 1.14624 1.04847 1.20237 1.08919 0.93321 0.89491 1.20306 1.02846 1.01542 0.88934 1.21523 1.01348 0.97416 0.93622 1.18398 1.13386 0.97578 0.93096 1.21573 0.87250 0.85810 0.92545 1.17944 0.99734 0.96948 1.04371 1.25649 0.92840 0.92361 0.92354 1.81310 1.08927 1.12403 1.11390 1.18149 0.80974 0.84701 0.82333 1.90844 1.73287 1.22638 1.56138 1.46289 1.25582 1.24116 1.40651 1.18473 0.87657 0.93520 0.85071 1.21617 1.08790 1.06832 1.22513 0.91208 1.25946 1.01024 0.97314 0.94785 1.70112 1.36069 1.25671 1.24420 0.85203 0.77827 0.78455 0.78315 1.18625 1.19949 1.20054 1.21259 0.98878 0.91568 0.90315 1.20662 1.03545 1.03862 0.86966 0.93362 0.92810 0.88157 0.92640 0.91520 0.87076 0.88343 0.89747 0.90873 0.91733 0.87145 0.80222 0.77394 0.98687 0.99048 0.92154 0.89943 0.89316 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.55 10.70 -148.98 -1.59 -7.15 16 3 C 0.06 0.69 6.26 71.98 0.45 1.14 16 4 C 0.10 1.47 5.73 86.38 0.49 1.97 16 5 N -0.43 -9.06 2.68 -494.06 -1.33 -10.39 16 6 C -0.01 -0.37 6.84 40.93 0.28 -0.09 16 7 C -0.08 -1.72 10.04 71.24 0.72 -1.00 16 8 C -0.12 -3.66 7.79 23.66 0.18 -3.48 16 9 C -0.22 -5.73 4.71 -20.03 -0.09 -5.82 16 10 C 0.15 3.56 9.31 23.12 0.22 3.77 16 11 C -0.18 -5.70 5.87 -19.79 -0.12 -5.82 16 12 C 0.28 8.92 14.21 88.31 1.25 10.18 16 13 N -0.46 -15.97 18.55 19.03 0.35 -15.62 16 14 C 0.55 23.09 7.34 86.53 0.63 23.72 16 15 O -0.55 -25.57 12.09 -4.29 -0.05 -25.63 16 16 N -0.72 -33.62 5.50 -470.54 -2.59 -36.20 16 17 C 0.28 15.68 5.43 85.63 0.46 16.14 16 18 C -0.56 -32.32 9.28 25.60 0.24 -32.09 16 19 H 0.07 3.83 7.60 -2.91 -0.02 3.81 16 20 C 0.01 0.54 5.46 84.66 0.46 1.00 16 21 N -0.92 -56.42 13.29 21.45 0.28 -56.14 16 22 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.10 1.99 6.95 42.20 0.29 2.29 16 27 C -0.09 -1.05 9.63 71.24 0.69 -0.36 16 28 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 1.35 7.50 -2.39 -0.02 1.34 16 34 H 0.10 1.49 6.87 -2.39 -0.02 1.48 16 35 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.07 1.37 6.92 -2.38 -0.02 1.35 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.11 4.03 7.70 -2.91 -0.02 4.01 16 39 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 40 H 0.39 17.22 7.21 -92.71 -0.67 16.55 16 41 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 0.63 7.59 -2.39 -0.02 0.62 16 46 H 0.11 0.76 7.95 -2.39 -0.02 0.74 16 Total: -1.00 -77.63 396.62 4.85 -72.78 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.33 Total: 18.95 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 7.41 Total: 13.01 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -3.27 Total: -118.34 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.65 Total: -32.77 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -77.63 4.85 -72.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.355 kcal (2) G-P(sol) polarization free energy of solvation -77.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds