Wall clock time and date at job start Tue Mar 31 2020 16:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99889 * 2 1 4 4 C 1.53004 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.36534 * 124.77632 * 90.03255 * 5 4 3 7 7 C 1.50705 * 125.38171 * 0.02562 * 6 5 4 8 8 C 1.34323 * 109.23342 * 179.97438 * 6 5 4 9 9 C 1.46968 * 106.38391 * 359.97438 * 8 6 5 10 10 C 1.41836 * 127.07995 * 179.97438 * 9 8 6 11 11 C 1.38081 * 120.00279 * 16.90676 * 10 9 8 12 12 C 1.43198 * 119.99881 * 6.83691 * 11 10 9 13 13 N 8.60487 * 131.78452 * 12.30138 * 2 1 3 14 14 C 1.46945 * 120.00080 * 186.83043 * 11 10 9 15 15 O 1.21672 * 119.99818 * 0.02562 * 14 11 10 16 16 N 1.34775 * 120.00296 * 179.97438 * 14 11 10 17 17 C 1.46502 * 120.00323 * 180.02562 * 16 14 11 18 18 C 1.50696 * 109.46859 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00534 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99551 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99808 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00139 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47445 * 89.99701 * 22 20 18 24 24 H 1.48504 * 109.46710 * 209.99941 * 22 20 18 25 25 H 1.48505 * 109.47061 * 329.99390 * 22 20 18 26 26 C 1.34571 * 124.77154 * 269.72133 * 5 4 3 27 27 C 1.50705 * 125.95509 * 359.97438 * 26 5 4 28 28 H 1.09000 * 109.46871 * 60.00068 * 1 2 3 29 29 H 1.08999 * 109.46593 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47205 * 299.99616 * 1 2 3 31 31 H 1.08998 * 109.47593 * 300.00523 * 3 2 1 32 32 H 1.09009 * 109.46833 * 59.99998 * 3 2 1 33 33 H 1.08997 * 109.47184 * 300.00422 * 4 3 2 34 34 H 1.09000 * 109.46825 * 60.00540 * 4 3 2 35 35 H 1.08997 * 109.46651 * 90.00194 * 7 6 5 36 36 H 1.08991 * 109.47358 * 210.00568 * 7 6 5 37 37 H 1.09001 * 109.46792 * 330.00440 * 7 6 5 38 38 H 1.08001 * 126.80429 * 180.02562 * 8 6 5 39 39 H 1.07997 * 119.99719 * 196.90672 * 10 9 8 40 40 H 0.97002 * 119.99603 * 0.02562 * 16 14 11 41 41 H 1.08996 * 109.46990 * 300.00265 * 17 16 14 42 42 H 1.09000 * 109.46787 * 59.99800 * 17 16 14 43 43 H 0.96999 * 119.99701 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.46495 * 89.99595 * 27 26 5 45 45 H 1.08991 * 109.47495 * 210.00328 * 27 26 5 46 46 H 1.09006 * 109.46904 * 330.00367 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1312 2.5231 0.0013 6 6 4.4480 3.2340 1.1231 7 6 4.2406 2.7657 2.5404 8 6 4.9748 4.4162 0.7637 9 6 4.9843 4.4362 -0.7058 10 6 5.4498 5.4816 -1.5438 11 6 6.2686 6.4669 -1.0285 12 6 6.7668 6.3565 0.3094 13 7 7.1627 6.2690 1.3670 14 6 6.6287 7.6286 -1.8532 15 8 6.2051 7.7225 -2.9899 16 7 7.4274 8.5906 -1.3501 17 6 7.7860 9.7490 -2.1721 18 6 8.6809 10.6682 -1.3814 19 1 8.9548 10.4151 -0.3679 20 6 9.1500 11.8324 -1.9520 21 7 9.9307 12.6349 -1.2618 22 14 8.6757 12.2707 -3.7048 23 1 7.4261 13.0727 -3.6937 24 1 9.7662 13.0618 -4.3296 25 1 8.4580 11.0257 -4.4847 26 6 4.4487 3.2223 -1.1038 27 6 4.2539 2.7652 -2.5266 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 1.6885 1.8463 0.8901 33 1 3.8568 0.6439 0.8908 34 1 3.8574 0.6437 -0.8892 35 1 5.1296 2.2353 2.8815 36 1 4.0612 3.6262 3.1848 37 1 3.3809 2.0968 2.5799 38 1 5.3230 5.1968 1.4238 39 1 5.1639 5.5069 -2.5849 40 1 7.7648 8.5159 -0.4437 41 1 8.3108 9.4118 -3.0659 42 1 6.8810 10.2830 -2.4618 43 1 10.2610 13.4538 -1.6634 44 1 3.2679 3.0725 -2.8750 45 1 5.0192 3.2132 -3.1602 46 1 4.3335 1.6791 -2.5734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787619118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:52 Heat of formation + Delta-G solvation = 8.125809 kcal Electronic energy + Delta-G solvation = -27036.909670 eV Core-core repulsion = 23121.264349 eV Total energy + Delta-G solvation = -3915.645321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84671 -39.11655 -38.55080 -36.71647 -34.81545 -34.15339 -33.42183 -32.36131 -32.11494 -29.66752 -29.22027 -27.97580 -26.70864 -25.54558 -24.01542 -22.94343 -22.05418 -20.66628 -20.34522 -19.19274 -17.80550 -17.35472 -16.74767 -16.58875 -16.24446 -16.03137 -15.40903 -14.94578 -14.80994 -14.73350 -14.59855 -14.35681 -13.82863 -13.73776 -13.63259 -13.30292 -13.17103 -13.04427 -12.99607 -12.94292 -12.64510 -12.38216 -12.24455 -12.20505 -12.14037 -12.09928 -11.84593 -11.76385 -11.47435 -10.97236 -10.73343 -10.40911 -10.17930 -9.92939 -9.44867 -9.34985 -8.72950 -8.60272 -8.17335 -7.71804 -6.15195 -4.17456 0.50078 1.89638 2.17161 2.76689 2.95455 3.17798 3.26477 3.31424 3.37684 3.45788 3.96413 4.03900 4.08856 4.22976 4.26313 4.30875 4.38565 4.44466 4.55154 4.66151 4.71378 4.72700 4.83867 4.92162 4.96346 5.06589 5.12611 5.18633 5.19717 5.21415 5.24400 5.44247 5.49463 5.56987 5.72169 5.82109 6.16253 6.22860 6.35776 6.59863 6.78964 6.85766 6.89503 7.12326 7.23598 7.43483 7.75358 8.17101 8.55282 8.80175 8.92840 9.44019 10.96898 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.002126 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.953756 B =13167.663412 C =13962.506084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.047 3.953 4 C 0.100 3.900 5 N -0.430 5.430 6 C 0.009 3.991 7 C -0.086 4.086 8 C -0.159 4.159 9 C -0.194 4.194 10 C 0.099 3.901 11 C -0.149 4.149 12 C 0.269 3.731 13 N -0.432 5.432 14 C 0.560 3.440 15 O -0.555 6.555 16 N -0.699 5.699 17 C 0.220 3.780 18 C -0.544 4.544 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.892 5.892 22 Si 0.878 3.122 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.259 1.259 26 C 0.088 3.912 27 C -0.097 4.097 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.396 0.604 41 H 0.029 0.971 42 H 0.025 0.975 43 H 0.267 0.733 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.359 -28.719 2.078 34.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.031 4.031 4 C -0.023 4.023 5 N -0.107 5.107 6 C -0.098 4.098 7 C -0.143 4.143 8 C -0.182 4.182 9 C -0.200 4.200 10 C 0.074 3.926 11 C -0.156 4.156 12 C -0.044 4.044 13 N -0.109 5.109 14 C 0.346 3.654 15 O -0.437 6.437 16 N -0.345 5.345 17 C 0.098 3.902 18 C -0.582 4.582 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.183 1.183 26 C -0.028 4.028 27 C -0.154 4.154 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.230 0.770 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.936 -29.033 2.949 34.788 hybrid contribution -0.338 0.678 -0.681 1.018 sum -19.274 -28.355 2.268 34.360 Atomic orbital electron populations 1.22802 0.79873 1.03235 1.00454 1.87800 1.20618 1.26763 1.95577 1.22796 0.92953 0.85546 1.01784 1.21612 0.92301 0.82249 1.06096 1.43373 1.47539 1.14310 1.05462 1.20218 1.07524 0.93553 0.88455 1.20362 1.02027 1.02214 0.89718 1.22413 1.04472 0.97485 0.93842 1.18587 1.12636 0.95644 0.93160 1.21222 0.85905 0.86998 0.98495 1.18321 1.08106 1.00732 0.88490 1.25382 0.93030 0.93342 0.92673 1.81042 1.09775 1.08295 1.11798 1.17552 0.79553 0.82121 0.86192 1.90761 1.55807 1.78818 1.18281 1.46138 1.47950 1.22416 1.18040 1.19548 0.95778 0.83158 0.91700 1.21111 1.30205 1.05161 1.01733 0.90311 1.24805 0.94195 0.95587 0.98074 1.69893 1.33278 1.12478 1.37327 0.86801 0.78530 0.79443 0.84830 1.19835 1.20963 1.18348 1.20966 1.00654 0.92174 0.89030 1.20551 1.04054 1.01776 0.89046 0.93657 0.89087 0.93724 0.92247 0.92349 0.88048 0.87960 0.90859 0.89884 0.91872 0.83060 0.82930 0.77042 0.95291 0.95759 0.92307 0.89929 0.88894 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.41 10.70 -35.23 -0.38 -2.78 16 3 C 0.05 0.25 6.26 37.16 0.23 0.49 16 4 C 0.10 0.55 5.73 -4.04 -0.02 0.53 16 5 N -0.43 -3.53 2.68 -107.51 -0.29 -3.82 16 6 C 0.01 0.09 6.84 -81.88 -0.56 -0.47 16 7 C -0.09 -0.61 9.79 36.01 0.35 -0.26 16 8 C -0.16 -1.97 9.37 -37.43 -0.35 -2.32 16 9 C -0.19 -2.27 5.91 -104.88 -0.62 -2.89 16 10 C 0.10 1.26 9.19 -38.26 -0.35 0.91 16 11 C -0.15 -2.36 5.90 -104.50 -0.62 -2.98 16 12 C 0.27 4.44 10.94 -22.58 -0.25 4.19 16 13 N -0.43 -7.53 17.23 41.71 0.72 -6.81 16 14 C 0.56 11.08 7.74 -12.74 -0.10 10.98 16 15 O -0.56 -12.13 16.30 5.21 0.09 -12.05 16 16 N -0.70 -15.27 5.50 -62.72 -0.34 -15.62 16 17 C 0.22 5.56 4.50 -5.19 -0.02 5.53 16 18 C -0.54 -15.47 9.83 -34.44 -0.34 -15.81 16 19 H 0.08 2.37 7.84 -52.49 -0.41 1.96 16 20 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 21 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 22 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 26 C 0.09 0.79 6.95 -81.28 -0.56 0.23 16 27 C -0.10 -0.55 9.88 36.01 0.36 -0.20 16 28 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 33 H 0.10 0.50 7.49 -51.93 -0.39 0.11 16 34 H 0.10 0.45 6.87 -51.93 -0.36 0.10 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.15 2.11 5.17 -52.49 -0.27 1.84 16 39 H 0.15 1.70 7.50 -52.49 -0.39 1.30 16 40 H 0.40 8.31 7.19 -40.82 -0.29 8.01 16 41 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 42 H 0.02 0.63 7.57 -51.93 -0.39 0.23 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.51 7.85 -51.93 -0.41 0.11 16 46 H 0.07 0.30 6.92 -51.93 -0.36 -0.06 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -34.79 392.52 -6.62 -41.41 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.59 Total: 1.85 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.84 Total: 1.29 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.86 Total: -52.58 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.29 Total: -14.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.79 -6.62 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.532 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds