Wall clock time and date at job start Tue Mar 31 2020 16:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99889 * 2 1 4 4 C 1.53004 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.36534 * 124.77632 * 90.03255 * 5 4 3 7 7 C 1.50705 * 125.38171 * 0.02562 * 6 5 4 8 8 C 1.34323 * 109.23342 * 179.97438 * 6 5 4 9 9 C 1.46968 * 106.38391 * 359.97438 * 8 6 5 10 10 C 1.41836 * 127.07995 * 179.97438 * 9 8 6 11 11 C 1.38081 * 120.00279 * 16.90676 * 10 9 8 12 12 C 1.43198 * 119.99881 * 6.83691 * 11 10 9 13 13 N 8.60487 * 131.78452 * 12.30138 * 2 1 3 14 14 C 1.46945 * 120.00080 * 186.83043 * 11 10 9 15 15 O 1.21672 * 119.99818 * 0.02562 * 14 11 10 16 16 N 1.34775 * 120.00296 * 179.97438 * 14 11 10 17 17 C 1.46502 * 120.00323 * 180.02562 * 16 14 11 18 18 C 1.50696 * 109.46859 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00534 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99551 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99808 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00139 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47445 * 89.99701 * 22 20 18 24 24 H 1.48504 * 109.46710 * 209.99941 * 22 20 18 25 25 H 1.48505 * 109.47061 * 329.99390 * 22 20 18 26 26 C 1.34571 * 124.77154 * 269.72133 * 5 4 3 27 27 C 1.50705 * 125.95509 * 359.97438 * 26 5 4 28 28 H 1.09000 * 109.46871 * 60.00068 * 1 2 3 29 29 H 1.08999 * 109.46593 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47205 * 299.99616 * 1 2 3 31 31 H 1.08998 * 109.47593 * 300.00523 * 3 2 1 32 32 H 1.09009 * 109.46833 * 59.99998 * 3 2 1 33 33 H 1.08997 * 109.47184 * 300.00422 * 4 3 2 34 34 H 1.09000 * 109.46825 * 60.00540 * 4 3 2 35 35 H 1.08997 * 109.46651 * 90.00194 * 7 6 5 36 36 H 1.08991 * 109.47358 * 210.00568 * 7 6 5 37 37 H 1.09001 * 109.46792 * 330.00440 * 7 6 5 38 38 H 1.08001 * 126.80429 * 180.02562 * 8 6 5 39 39 H 1.07997 * 119.99719 * 196.90672 * 10 9 8 40 40 H 0.97002 * 119.99603 * 0.02562 * 16 14 11 41 41 H 1.08996 * 109.46990 * 300.00265 * 17 16 14 42 42 H 1.09000 * 109.46787 * 59.99800 * 17 16 14 43 43 H 0.96999 * 119.99701 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.46495 * 89.99595 * 27 26 5 45 45 H 1.08991 * 109.47495 * 210.00328 * 27 26 5 46 46 H 1.09006 * 109.46904 * 330.00367 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1312 2.5231 0.0013 6 6 4.4480 3.2340 1.1231 7 6 4.2406 2.7657 2.5404 8 6 4.9748 4.4162 0.7637 9 6 4.9843 4.4362 -0.7058 10 6 5.4498 5.4816 -1.5438 11 6 6.2686 6.4669 -1.0285 12 6 6.7668 6.3565 0.3094 13 7 7.1627 6.2690 1.3670 14 6 6.6287 7.6286 -1.8532 15 8 6.2051 7.7225 -2.9899 16 7 7.4274 8.5906 -1.3501 17 6 7.7860 9.7490 -2.1721 18 6 8.6809 10.6682 -1.3814 19 1 8.9548 10.4151 -0.3679 20 6 9.1500 11.8324 -1.9520 21 7 9.9307 12.6349 -1.2618 22 14 8.6757 12.2707 -3.7048 23 1 7.4261 13.0727 -3.6937 24 1 9.7662 13.0618 -4.3296 25 1 8.4580 11.0257 -4.4847 26 6 4.4487 3.2223 -1.1038 27 6 4.2539 2.7652 -2.5266 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 1.6885 1.8463 0.8901 33 1 3.8568 0.6439 0.8908 34 1 3.8574 0.6437 -0.8892 35 1 5.1296 2.2353 2.8815 36 1 4.0612 3.6262 3.1848 37 1 3.3809 2.0968 2.5799 38 1 5.3230 5.1968 1.4238 39 1 5.1639 5.5069 -2.5849 40 1 7.7648 8.5159 -0.4437 41 1 8.3108 9.4118 -3.0659 42 1 6.8810 10.2830 -2.4618 43 1 10.2610 13.4538 -1.6634 44 1 3.2679 3.0725 -2.8750 45 1 5.0192 3.2132 -3.1602 46 1 4.3335 1.6791 -2.5734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787619118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:52 Heat of formation + Delta-G solvation = -15.333267 kcal Electronic energy + Delta-G solvation = -27037.926932 eV Core-core repulsion = 23121.264349 eV Total energy + Delta-G solvation = -3916.662583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.61869 -40.63555 -38.96988 -37.96618 -36.27303 -35.48533 -34.38843 -34.09525 -33.04947 -30.46991 -30.14749 -29.36685 -27.24449 -26.48658 -24.79549 -24.04589 -23.40362 -22.19241 -21.28518 -20.38862 -19.15702 -18.17317 -17.93488 -17.27133 -17.13611 -16.85189 -16.56675 -16.23157 -16.16788 -16.03043 -15.48617 -15.43587 -15.05939 -14.79621 -14.46351 -14.29084 -14.20117 -14.14936 -14.09653 -13.90800 -13.78049 -13.45622 -13.43956 -13.05660 -13.02910 -12.79090 -12.68766 -12.64646 -12.46534 -12.33590 -12.25760 -11.87628 -11.66726 -11.18480 -10.95043 -10.90120 -10.76898 -9.97226 -9.44224 -8.67424 -8.38196 -6.46962 -0.54625 1.13130 1.37784 1.38314 1.52681 1.53242 1.68718 1.73997 1.81821 2.31471 2.48257 2.78163 2.84353 2.97179 3.07950 3.56937 3.66958 3.72534 3.85882 3.90271 4.03894 4.17485 4.29099 4.36014 4.42782 4.44837 4.50773 4.57886 4.64166 4.66523 4.73655 4.75615 4.78668 4.85272 4.94662 4.99780 5.06746 5.12395 5.20196 5.27666 5.29807 5.47830 5.71795 5.99147 6.00621 6.07891 6.19674 6.52021 6.53264 6.78245 7.14361 7.32503 8.77239 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.002126 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.953756 B =13167.663412 C =13962.506084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.051 3.949 4 C 0.096 3.904 5 N -0.423 5.423 6 C 0.012 3.988 7 C -0.085 4.085 8 C -0.189 4.189 9 C -0.239 4.239 10 C 0.155 3.845 11 C -0.200 4.200 12 C 0.285 3.715 13 N -0.467 5.467 14 C 0.569 3.431 15 O -0.579 6.579 16 N -0.711 5.711 17 C 0.233 3.767 18 C -0.554 4.554 19 H 0.045 0.955 20 C 0.022 3.978 21 N -0.935 5.935 22 Si 0.948 3.052 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.251 1.251 26 C 0.128 3.872 27 C -0.103 4.103 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.174 0.826 40 H 0.396 0.604 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.273 0.727 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.868 -31.963 0.092 38.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.027 4.027 4 C -0.025 4.025 5 N -0.099 5.099 6 C -0.094 4.094 7 C -0.143 4.143 8 C -0.212 4.212 9 C -0.246 4.246 10 C 0.131 3.869 11 C -0.208 4.208 12 C -0.027 4.027 13 N -0.146 5.146 14 C 0.358 3.642 15 O -0.463 6.463 16 N -0.359 5.359 17 C 0.109 3.891 18 C -0.592 4.592 19 H 0.063 0.937 20 C -0.178 4.178 21 N -0.574 5.574 22 Si 0.770 3.230 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.175 1.175 26 C 0.008 3.992 27 C -0.160 4.160 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.147 0.853 39 H 0.191 0.809 40 H 0.230 0.770 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.466 -32.318 1.000 38.810 hybrid contribution 0.243 1.347 0.018 1.369 sum -21.223 -30.971 1.018 37.559 Atomic orbital electron populations 1.22960 0.78813 1.04186 1.00972 1.87773 1.21808 1.26994 1.95670 1.22725 0.92612 0.85469 1.01892 1.21857 0.92443 0.80525 1.07637 1.43630 1.46375 1.15075 1.04789 1.20504 1.06103 0.92842 0.89972 1.20434 1.03219 1.02566 0.88036 1.22386 1.06146 0.98355 0.94340 1.18655 1.15757 0.97206 0.92933 1.21505 0.81391 0.84866 0.99122 1.17761 1.12946 1.01728 0.88388 1.25442 0.92155 0.92539 0.92584 1.81019 1.11441 1.09412 1.12689 1.17884 0.78053 0.82165 0.86096 1.90721 1.56695 1.79514 1.19323 1.46040 1.49412 1.22495 1.17907 1.19185 0.94755 0.83756 0.91356 1.21310 1.30896 1.06214 1.00806 0.93675 1.25742 0.93918 0.95320 1.02817 1.70018 1.34556 1.13227 1.39569 0.85708 0.78759 0.79526 0.79030 1.18669 1.19826 1.17504 1.21532 0.96262 0.90635 0.90734 1.20820 1.05418 1.03456 0.86325 0.92996 0.88037 0.93363 0.91793 0.92693 0.87104 0.86020 0.90266 0.90221 0.89682 0.85327 0.80873 0.76989 0.95787 0.95998 0.91815 0.87811 0.88287 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 113.37 1.25 1.38 16 2 O -0.40 -3.68 10.70 -148.98 -1.59 -5.27 16 3 C 0.05 0.37 6.26 71.98 0.45 0.82 16 4 C 0.10 0.67 5.73 86.38 0.50 1.17 16 5 N -0.42 -5.56 2.68 -494.04 -1.33 -6.89 16 6 C 0.01 0.22 6.84 40.93 0.28 0.50 16 7 C -0.09 -1.07 9.79 71.24 0.70 -0.37 16 8 C -0.19 -4.64 9.37 23.66 0.22 -4.42 16 9 C -0.24 -5.22 5.91 -20.03 -0.12 -5.34 16 10 C 0.16 3.79 9.19 23.12 0.21 4.00 16 11 C -0.20 -6.49 5.90 -19.79 -0.12 -6.60 16 12 C 0.28 9.90 10.94 88.37 0.97 10.86 16 13 N -0.47 -17.34 17.23 18.96 0.33 -17.01 16 14 C 0.57 22.97 7.74 86.52 0.67 23.64 16 15 O -0.58 -25.25 16.30 -4.26 -0.07 -25.32 16 16 N -0.71 -32.37 5.50 -470.56 -2.59 -34.96 16 17 C 0.23 12.02 4.50 85.63 0.38 12.41 16 18 C -0.55 -32.76 9.83 25.60 0.25 -32.50 16 19 H 0.05 2.89 7.84 -2.91 -0.02 2.87 16 20 C 0.02 1.29 5.47 84.65 0.46 1.75 16 21 N -0.94 -58.26 13.96 21.45 0.30 -57.96 16 22 Si 0.95 44.84 27.47 68.60 1.88 46.73 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 26 C 0.13 1.85 6.95 42.21 0.29 2.14 16 27 C -0.10 -0.67 9.88 71.24 0.70 0.04 16 28 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.11 0.65 7.49 -2.39 -0.02 0.63 16 34 H 0.12 0.46 6.87 -2.39 -0.02 0.44 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 0.68 7.57 -2.39 -0.02 0.67 16 38 H 0.13 3.78 5.17 -2.91 -0.02 3.76 16 39 H 0.17 3.41 7.50 -2.91 -0.02 3.39 16 40 H 0.40 17.76 7.19 -92.71 -0.67 17.09 16 41 H 0.02 1.26 7.20 -2.39 -0.02 1.25 16 42 H 0.02 1.14 7.57 -2.39 -0.02 1.12 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.10 0.63 7.85 -2.39 -0.02 0.62 16 46 H 0.09 0.25 6.92 -2.38 -0.02 0.23 16 Total: -1.00 -78.47 392.52 4.33 -74.14 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.29 Total: 17.06 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 7.10 Total: 9.47 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -3.29 Total: -116.81 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.66 Total: -30.59 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal Total: -78.47 4.33 -74.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.807 kcal (2) G-P(sol) polarization free energy of solvation -78.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds