Wall clock time and date at job start Tue Mar 31 2020 16:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.87698 * 2 1 4 4 C 1.38241 * 120.00279 * 217.96135 * 3 2 1 5 5 C 1.38229 * 120.00096 * 179.78323 * 4 3 2 6 6 C 1.38241 * 119.99841 * 0.46065 * 5 4 3 7 7 C 1.38233 * 120.00061 * 359.76953 * 6 5 4 8 8 C 1.38235 * 120.00212 * 0.02562 * 7 6 5 9 9 C 1.54327 * 109.88182 * 121.01298 * 2 1 3 10 10 C 1.55154 * 102.94229 * 97.37736 * 9 2 1 11 11 C 1.54910 * 101.58202 * 35.50254 * 10 9 2 12 12 N 1.47023 * 110.01294 * 238.89679 * 2 1 3 13 13 C 1.34778 * 125.64220 * 59.43232 * 12 2 1 14 14 O 1.21577 * 120.00375 * 4.99038 * 13 12 2 15 15 N 1.34783 * 119.99694 * 184.99017 * 13 12 2 16 16 C 1.46495 * 120.00224 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47108 * 180.02562 * 16 15 13 18 18 O 1.21287 * 119.99884 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99609 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99857 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99848 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99909 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00224 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46849 * 59.99845 * 24 22 20 26 26 H 1.48496 * 109.47255 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47008 * 300.00229 * 24 22 20 28 28 H 1.09003 * 109.46883 * 59.29935 * 1 2 3 29 29 H 1.08996 * 109.46889 * 179.29885 * 1 2 3 30 30 H 1.08996 * 109.47109 * 299.30368 * 1 2 3 31 31 H 1.08000 * 119.99283 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.00391 * 180.25496 * 5 4 3 33 33 H 1.08002 * 119.99948 * 179.78678 * 6 5 4 34 34 H 1.08001 * 119.99668 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.00080 * 179.97438 * 8 7 6 36 36 H 1.09000 * 110.72221 * 215.73977 * 9 2 1 37 37 H 1.08995 * 110.71921 * 338.83905 * 9 2 1 38 38 H 1.09007 * 111.00336 * 153.57235 * 10 9 2 39 39 H 1.08999 * 111.00987 * 277.39190 * 10 9 2 40 40 H 1.09003 * 110.36927 * 81.82937 * 11 10 9 41 41 H 1.08999 * 110.37194 * 204.04065 * 11 10 9 42 42 H 0.97003 * 119.99452 * 0.02562 * 15 13 12 43 43 H 1.09002 * 109.47026 * 300.00100 * 16 15 13 44 44 H 1.09001 * 109.47287 * 59.99413 * 16 15 13 45 45 H 0.97001 * 119.99963 * 359.97438 * 19 17 16 46 46 H 0.96999 * 119.99928 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0424 1.4172 0.0000 4 6 3.1650 1.7463 -0.7364 5 6 3.6324 3.0472 -0.7400 6 6 2.9826 4.0171 0.0005 7 6 1.8628 3.6870 0.7407 8 6 1.3930 2.3869 0.7409 9 6 2.0548 -0.7477 1.2438 10 6 2.3556 -2.1673 0.6947 11 6 2.8617 -1.8473 -0.7340 12 7 2.0332 -0.7136 -1.1829 13 6 1.7786 -0.3858 -2.4651 14 8 1.1540 0.6253 -2.7217 15 7 2.2163 -1.1789 -3.4631 16 6 1.9401 -0.8224 -4.8569 17 6 2.5325 -1.8656 -5.7691 18 8 3.1272 -2.8133 -5.3009 19 7 2.4012 -1.7454 -7.1051 20 6 2.9405 -2.6941 -7.9350 21 1 3.4708 -3.5375 -7.5181 22 6 2.8048 -2.5704 -9.3122 23 7 2.1599 -1.5438 -9.8194 24 14 3.5402 -3.8627 -10.4430 25 1 2.9376 -5.1858 -10.1404 26 1 3.2595 -3.5017 -11.8558 27 1 5.0087 -3.9275 -10.2316 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5030 0.8961 31 1 3.6751 0.9876 -1.3114 32 1 4.5071 3.3053 -1.3185 33 1 3.3498 5.0328 0.0005 34 1 1.3555 4.4446 1.3195 35 1 0.5183 2.1289 1.3195 36 1 2.9642 -0.2793 1.6203 37 1 1.2919 -0.7858 2.0213 38 1 3.1311 -2.6577 1.2832 39 1 1.4504 -2.7737 0.6623 40 1 3.9135 -1.5620 -0.7089 41 1 2.7183 -2.7069 -1.3888 42 1 2.7143 -1.9858 -3.2583 43 1 0.8624 -0.7737 -5.0128 44 1 2.3834 0.1484 -5.0783 45 1 1.9252 -0.9876 -7.4794 46 1 2.0655 -1.4573 -10.7809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883695982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:17 Heat of formation + Delta-G solvation = -30.872501 kcal Electronic energy + Delta-G solvation = -28566.293382 eV Core-core repulsion = 24648.956968 eV Total energy + Delta-G solvation = -3917.336415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96140 -39.04135 -38.22390 -37.36670 -34.45499 -33.77017 -32.64262 -31.71023 -31.33376 -30.79901 -29.30755 -27.43301 -26.11410 -24.59569 -23.36777 -22.44336 -22.04461 -20.81322 -19.62219 -19.13260 -18.24472 -17.87014 -16.83583 -16.29721 -15.69911 -15.41112 -15.21246 -14.94582 -14.72074 -14.55202 -14.24913 -14.04805 -13.81933 -13.70746 -13.37816 -13.32429 -13.05723 -13.01454 -12.49464 -12.33286 -12.13962 -12.04315 -11.85181 -11.71981 -11.61992 -11.40804 -11.10043 -10.99259 -10.88267 -10.72245 -10.50422 -10.30718 -9.87375 -9.61838 -8.90630 -8.86573 -8.71115 -8.61360 -8.41057 -8.09005 -6.50333 -3.92505 1.36028 1.44090 2.66098 3.14099 3.21813 3.25608 3.41207 3.76210 3.76948 4.04696 4.19341 4.31074 4.49295 4.56974 4.81096 4.85346 4.92119 4.97835 5.01545 5.10338 5.18273 5.20175 5.38954 5.45213 5.50793 5.53615 5.59124 5.63962 5.67037 5.77377 5.89763 5.93204 6.00422 6.02791 6.03463 6.09272 6.15166 6.37822 6.46144 6.52756 6.66783 6.80176 7.01138 7.22810 7.46571 7.93186 8.22724 8.46398 8.85174 9.05482 9.40618 9.88569 10.66530 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.002632 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.563029 B =10633.804051 C =11433.254371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.224 3.776 3 C -0.073 4.073 4 C -0.091 4.091 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.123 4.123 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.130 4.130 11 C 0.096 3.904 12 N -0.631 5.631 13 C 0.722 3.278 14 O -0.582 6.582 15 N -0.724 5.724 16 C 0.129 3.871 17 C 0.429 3.571 18 O -0.598 6.598 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.405 0.595 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 5.678 23.230 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.138 3.862 3 C -0.074 4.074 4 C -0.109 4.109 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.141 4.141 8 C -0.132 4.132 9 C -0.157 4.157 10 C -0.168 4.168 11 C -0.027 4.027 12 N -0.369 5.369 13 C 0.424 3.576 14 O -0.460 6.460 15 N -0.382 5.382 16 C 0.001 3.999 17 C 0.215 3.785 18 O -0.485 6.485 19 N -0.184 5.184 20 C -0.435 4.435 21 H 0.122 0.878 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.760 3.240 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.243 0.757 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.805 5.854 22.970 23.718 hybrid contribution 0.325 -0.465 -1.000 1.150 sum -0.480 5.388 21.970 22.627 Atomic orbital electron populations 1.22210 0.93509 1.02409 1.03223 1.19557 0.94049 0.88229 0.84375 1.19947 0.95376 0.94877 0.97168 1.20903 0.95907 0.96356 0.97716 1.21119 1.00160 0.93281 0.99205 1.21092 0.96359 0.99092 0.97771 1.21042 0.96929 0.96218 0.99934 1.20921 0.99593 0.92843 0.99836 1.22734 1.02068 0.95134 0.95737 1.22754 1.02138 0.96680 0.95188 1.22313 0.95006 0.89498 0.95909 1.47597 1.54195 1.31704 1.03438 1.15340 0.80046 0.83045 0.79165 1.90918 1.46179 1.26585 1.82270 1.44831 1.60636 1.28132 1.04613 1.20770 1.01072 0.98086 0.79986 1.19759 0.86571 0.88580 0.83592 1.90482 1.47903 1.34811 1.75313 1.41781 1.48492 1.24189 1.03923 1.19672 1.32406 1.04312 0.87078 0.87761 1.25317 0.97031 0.97807 0.97529 1.69608 1.40967 1.29119 1.13806 0.85880 0.79459 0.80268 0.78399 1.19786 1.20852 1.19792 0.90559 0.92207 0.91714 0.86669 0.86402 0.86478 0.86362 0.86178 0.90308 0.89662 0.89702 0.90353 0.91411 0.90354 0.75657 0.90100 0.90109 0.77017 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 7.85 37.16 0.29 -1.44 16 2 C 0.22 2.52 0.67 -131.99 -0.09 2.43 16 3 C -0.07 -0.91 4.01 -104.62 -0.42 -1.32 16 4 C -0.09 -1.23 8.47 -39.58 -0.34 -1.57 16 5 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 6 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 7 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 8 C -0.11 -1.25 9.17 -39.58 -0.36 -1.62 16 9 C -0.12 -0.95 6.01 -24.90 -0.15 -1.10 16 10 C -0.13 -0.97 7.08 -24.58 -0.17 -1.14 16 11 C 0.10 0.98 6.68 -2.53 -0.02 0.96 16 12 N -0.63 -8.25 1.91 -162.70 -0.31 -8.56 16 13 C 0.72 12.18 7.00 -86.91 -0.61 11.58 16 14 O -0.58 -11.51 14.47 5.30 0.08 -11.44 16 15 N -0.72 -12.68 5.49 -66.42 -0.36 -13.04 16 16 C 0.13 2.47 6.15 -5.20 -0.03 2.44 16 17 C 0.43 9.97 7.85 -10.98 -0.09 9.88 16 18 O -0.60 -15.37 15.24 5.55 0.08 -15.29 16 19 N -0.55 -13.75 5.29 -10.96 -0.06 -13.80 16 20 C -0.31 -8.33 9.68 -14.94 -0.14 -8.48 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 23 N -0.89 -24.05 13.05 55.50 0.72 -23.32 16 24 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 H 0.08 1.10 6.92 -51.93 -0.36 0.74 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.56 6.63 -51.93 -0.34 0.22 16 31 H 0.12 1.67 6.73 -52.49 -0.35 1.32 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 1.07 6.49 -52.49 -0.34 0.73 16 36 H 0.08 0.62 7.84 -51.93 -0.41 0.21 16 37 H 0.08 0.54 7.83 -51.93 -0.41 0.13 16 38 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.82 7.12 -51.93 -0.37 0.45 16 42 H 0.41 6.97 5.84 -40.82 -0.24 6.73 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.40 9.57 7.90 -40.82 -0.32 9.25 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -32.31 374.37 -9.10 -41.41 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -6.46 Total: 16.94 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -3.42 Total: 5.87 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.01 Total: -58.73 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: 0.16 Total: -26.72 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.31 -9.10 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.539 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds