Wall clock time and date at job start Tue Mar 31 2020 16:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.87698 * 2 1 4 4 C 1.38241 * 120.00279 * 217.96135 * 3 2 1 5 5 C 1.38229 * 120.00096 * 179.78323 * 4 3 2 6 6 C 1.38241 * 119.99841 * 0.46065 * 5 4 3 7 7 C 1.38233 * 120.00061 * 359.76953 * 6 5 4 8 8 C 1.38235 * 120.00212 * 0.02562 * 7 6 5 9 9 C 1.54327 * 109.88182 * 121.01298 * 2 1 3 10 10 C 1.55154 * 102.94229 * 97.37736 * 9 2 1 11 11 C 1.54910 * 101.58202 * 35.50254 * 10 9 2 12 12 N 1.47023 * 110.01294 * 238.89679 * 2 1 3 13 13 C 1.34778 * 125.64220 * 59.43232 * 12 2 1 14 14 O 1.21577 * 120.00375 * 4.99038 * 13 12 2 15 15 N 1.34783 * 119.99694 * 184.99017 * 13 12 2 16 16 C 1.46495 * 120.00224 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47108 * 180.02562 * 16 15 13 18 18 O 1.21287 * 119.99884 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99609 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99857 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99848 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99909 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00224 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46849 * 59.99845 * 24 22 20 26 26 H 1.48496 * 109.47255 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47008 * 300.00229 * 24 22 20 28 28 H 1.09003 * 109.46883 * 59.29935 * 1 2 3 29 29 H 1.08996 * 109.46889 * 179.29885 * 1 2 3 30 30 H 1.08996 * 109.47109 * 299.30368 * 1 2 3 31 31 H 1.08000 * 119.99283 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.00391 * 180.25496 * 5 4 3 33 33 H 1.08002 * 119.99948 * 179.78678 * 6 5 4 34 34 H 1.08001 * 119.99668 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.00080 * 179.97438 * 8 7 6 36 36 H 1.09000 * 110.72221 * 215.73977 * 9 2 1 37 37 H 1.08995 * 110.71921 * 338.83905 * 9 2 1 38 38 H 1.09007 * 111.00336 * 153.57235 * 10 9 2 39 39 H 1.08999 * 111.00987 * 277.39190 * 10 9 2 40 40 H 1.09003 * 110.36927 * 81.82937 * 11 10 9 41 41 H 1.08999 * 110.37194 * 204.04065 * 11 10 9 42 42 H 0.97003 * 119.99452 * 0.02562 * 15 13 12 43 43 H 1.09002 * 109.47026 * 300.00100 * 16 15 13 44 44 H 1.09001 * 109.47287 * 59.99413 * 16 15 13 45 45 H 0.97001 * 119.99963 * 359.97438 * 19 17 16 46 46 H 0.96999 * 119.99928 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0424 1.4172 0.0000 4 6 3.1650 1.7463 -0.7364 5 6 3.6324 3.0472 -0.7400 6 6 2.9826 4.0171 0.0005 7 6 1.8628 3.6870 0.7407 8 6 1.3930 2.3869 0.7409 9 6 2.0548 -0.7477 1.2438 10 6 2.3556 -2.1673 0.6947 11 6 2.8617 -1.8473 -0.7340 12 7 2.0332 -0.7136 -1.1829 13 6 1.7786 -0.3858 -2.4651 14 8 1.1540 0.6253 -2.7217 15 7 2.2163 -1.1789 -3.4631 16 6 1.9401 -0.8224 -4.8569 17 6 2.5325 -1.8656 -5.7691 18 8 3.1272 -2.8133 -5.3009 19 7 2.4012 -1.7454 -7.1051 20 6 2.9405 -2.6941 -7.9350 21 1 3.4708 -3.5375 -7.5181 22 6 2.8048 -2.5704 -9.3122 23 7 2.1599 -1.5438 -9.8194 24 14 3.5402 -3.8627 -10.4430 25 1 2.9376 -5.1858 -10.1404 26 1 3.2595 -3.5017 -11.8558 27 1 5.0087 -3.9275 -10.2316 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5030 0.8961 31 1 3.6751 0.9876 -1.3114 32 1 4.5071 3.3053 -1.3185 33 1 3.3498 5.0328 0.0005 34 1 1.3555 4.4446 1.3195 35 1 0.5183 2.1289 1.3195 36 1 2.9642 -0.2793 1.6203 37 1 1.2919 -0.7858 2.0213 38 1 3.1311 -2.6577 1.2832 39 1 1.4504 -2.7737 0.6623 40 1 3.9135 -1.5620 -0.7089 41 1 2.7183 -2.7069 -1.3888 42 1 2.7143 -1.9858 -3.2583 43 1 0.8624 -0.7737 -5.0128 44 1 2.3834 0.1484 -5.0783 45 1 1.9252 -0.9876 -7.4794 46 1 2.0655 -1.4573 -10.7809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883695982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:16 Heat of formation + Delta-G solvation = -50.944859 kcal Electronic energy + Delta-G solvation = -28567.163785 eV Core-core repulsion = 24648.956968 eV Total energy + Delta-G solvation = -3918.206817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99247 -40.49801 -39.66199 -38.45502 -36.25998 -35.37885 -33.67919 -33.35419 -32.58135 -31.69606 -30.17199 -29.06378 -26.92349 -26.45138 -24.38759 -23.31989 -22.90103 -21.84457 -21.30925 -20.49185 -19.98989 -19.16334 -17.84706 -17.48915 -17.23791 -16.78612 -16.56398 -16.40593 -16.06262 -15.68474 -15.58998 -15.47457 -15.14968 -14.70655 -14.42279 -14.24167 -14.16845 -13.95860 -13.84389 -13.56722 -13.52585 -13.27385 -13.11379 -12.90425 -12.84489 -12.55023 -12.48408 -12.14897 -12.12386 -11.82845 -11.62634 -11.57698 -11.49857 -11.22729 -10.58050 -10.28304 -10.11187 -9.77359 -9.69279 -9.43604 -8.52029 -6.02693 0.48753 0.54633 1.36998 1.40624 1.47646 1.54734 1.87682 2.11839 2.26973 2.83397 2.94567 3.14912 3.16656 3.54771 3.67154 3.80791 3.98793 4.13570 4.15584 4.19538 4.20794 4.27722 4.38585 4.41589 4.45846 4.58347 4.65583 4.68876 4.73296 4.87114 4.90389 4.96123 5.10901 5.14296 5.16773 5.23311 5.28458 5.31657 5.37459 5.48775 5.59733 5.64778 5.73161 5.90448 6.06168 6.15705 6.46172 6.94207 7.01598 7.40456 7.54339 7.92037 8.64764 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.002632 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.563029 B =10633.804051 C =11433.254371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.213 3.787 3 C -0.084 4.084 4 C -0.117 4.117 5 C -0.137 4.137 6 C -0.132 4.132 7 C -0.124 4.124 8 C -0.119 4.119 9 C -0.109 4.109 10 C -0.118 4.118 11 C 0.086 3.914 12 N -0.626 5.626 13 C 0.721 3.279 14 O -0.615 6.615 15 N -0.726 5.726 16 C 0.144 3.856 17 C 0.434 3.566 18 O -0.623 6.623 19 N -0.558 5.558 20 C -0.338 4.338 21 H 0.087 0.913 22 C -0.010 4.010 23 N -0.917 5.917 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.269 1.269 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.407 0.593 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.398 0.602 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 5.615 25.211 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.128 3.872 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.155 4.155 6 C -0.150 4.150 7 C -0.142 4.142 8 C -0.138 4.138 9 C -0.147 4.147 10 C -0.156 4.156 11 C -0.037 4.037 12 N -0.363 5.363 13 C 0.422 3.578 14 O -0.495 6.495 15 N -0.385 5.385 16 C 0.015 3.985 17 C 0.221 3.779 18 O -0.511 6.511 19 N -0.194 5.194 20 C -0.467 4.467 21 H 0.105 0.895 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.140 0.860 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.245 0.755 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.232 0.768 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.146 5.789 25.000 25.687 hybrid contribution 0.432 -0.388 -1.544 1.650 sum -0.714 5.401 23.456 24.080 Atomic orbital electron populations 1.22172 0.93323 1.02545 1.02792 1.19913 0.94236 0.88170 0.84835 1.20152 0.95144 0.95926 0.97290 1.20895 0.97119 0.96574 0.98907 1.21314 1.00821 0.93418 0.99981 1.21401 0.96483 0.99792 0.97290 1.21447 0.96514 0.96762 0.99435 1.21242 1.00053 0.92799 0.99659 1.22744 1.02853 0.94565 0.94528 1.22761 1.03086 0.96671 0.93055 1.22566 0.94994 0.88304 0.97808 1.47657 1.53703 1.32375 1.02597 1.15431 0.79718 0.82461 0.80151 1.90884 1.47695 1.27856 1.83111 1.44769 1.61098 1.28460 1.04154 1.20535 1.01080 0.96646 0.80199 1.20346 0.85388 0.88674 0.83450 1.90456 1.48791 1.36108 1.75766 1.41828 1.48933 1.24132 1.04466 1.19710 1.33971 1.04897 0.88159 0.89505 1.26149 0.96921 0.99704 0.98341 1.69679 1.41283 1.30249 1.14436 0.84920 0.78633 0.77696 0.76690 1.19387 1.19589 1.19446 0.94262 0.91680 0.88852 0.88698 0.86028 0.84290 0.83495 0.83840 0.90026 0.87078 0.87189 0.89736 0.91080 0.90941 0.75514 0.89332 0.89545 0.76761 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 7.85 71.98 0.57 -2.57 16 2 C 0.21 4.56 0.67 3.21 0.00 4.56 16 3 C -0.08 -2.04 4.01 -19.86 -0.08 -2.12 16 4 C -0.12 -3.25 8.47 22.27 0.19 -3.06 16 5 C -0.14 -3.45 10.05 22.27 0.22 -3.22 16 6 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 7 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 8 C -0.12 -2.41 9.17 22.27 0.20 -2.20 16 9 C -0.11 -1.43 6.01 31.78 0.19 -1.24 16 10 C -0.12 -1.45 7.08 31.99 0.23 -1.22 16 11 C 0.09 1.69 6.68 86.86 0.58 2.27 16 12 N -0.63 -16.36 1.91 -786.94 -1.50 -17.87 16 13 C 0.72 24.93 7.00 179.05 1.25 26.18 16 14 O -0.62 -25.09 14.47 -3.96 -0.06 -25.14 16 15 N -0.73 -26.13 5.49 -482.30 -2.65 -28.77 16 16 C 0.14 5.65 6.15 85.63 0.53 6.18 16 17 C 0.43 20.70 7.85 87.66 0.69 21.38 16 18 O -0.62 -32.82 15.24 -3.05 -0.05 -32.86 16 19 N -0.56 -28.69 5.29 -306.99 -1.62 -30.32 16 20 C -0.34 -18.86 9.68 84.04 0.81 -18.05 16 21 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 22 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 23 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 24 Si 1.00 42.04 29.55 68.60 2.03 44.07 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H 0.04 1.12 6.92 -2.39 -0.02 1.10 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.35 6.63 -2.39 -0.02 1.33 16 31 H 0.09 2.92 6.73 -2.91 -0.02 2.90 16 32 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.14 2.10 6.49 -2.91 -0.02 2.08 16 36 H 0.08 1.07 7.84 -2.39 -0.02 1.05 16 37 H 0.11 0.94 7.83 -2.39 -0.02 0.92 16 38 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.51 7.12 -2.39 -0.02 1.49 16 42 H 0.41 14.39 5.84 -92.71 -0.54 13.85 16 43 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 46 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -71.32 374.37 2.48 -68.84 By element: Atomic # 1 Polarization: 49.18 SS G_CDS: -0.26 Total: 48.93 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 6.30 Total: 22.18 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -5.49 Total: -126.01 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -0.10 Total: -58.01 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -71.32 2.48 -68.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.900 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds