Wall clock time and date at job start Tue Mar 31 2020 16:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.87133 * 2 1 4 4 C 1.38243 * 120.00336 * 321.62038 * 3 2 1 5 5 C 1.38228 * 120.00076 * 179.72958 * 4 3 2 6 6 C 1.38235 * 120.00185 * 0.26779 * 5 4 3 7 7 C 1.38234 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.38234 * 119.99905 * 141.83523 * 3 2 1 9 9 C 1.54324 * 109.88109 * 238.98671 * 2 1 3 10 10 C 1.55159 * 102.93916 * 262.62116 * 9 2 1 11 11 C 1.54910 * 101.58144 * 324.49461 * 10 9 2 12 12 N 1.47023 * 110.01218 * 121.09760 * 2 1 3 13 13 C 1.34777 * 125.64875 * 300.52922 * 12 2 1 14 14 O 1.21588 * 119.99832 * 5.18784 * 13 12 2 15 15 N 1.34775 * 119.99937 * 185.18521 * 13 12 2 16 16 C 1.46497 * 119.99825 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46858 * 180.02562 * 16 15 13 18 18 O 1.21282 * 120.00139 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99721 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99902 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99383 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00172 * 179.97438 * 20 19 17 23 23 N 1.31420 * 119.99662 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47197 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46842 * 119.99770 * 24 22 20 27 27 H 1.48497 * 109.47205 * 239.99826 * 24 22 20 28 28 H 1.08999 * 109.47406 * 60.69779 * 1 2 3 29 29 H 1.08998 * 109.47098 * 180.70286 * 1 2 3 30 30 H 1.09003 * 109.47111 * 300.69729 * 1 2 3 31 31 H 1.08003 * 119.99548 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.99745 * 180.26044 * 5 4 3 33 33 H 1.07995 * 120.00127 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.00093 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.00413 * 0.06365 * 8 3 2 36 36 H 1.08997 * 110.71961 * 20.97989 * 9 2 1 37 37 H 1.08995 * 110.72014 * 144.07902 * 9 2 1 38 38 H 1.08995 * 111.00532 * 82.56967 * 10 9 2 39 39 H 1.08999 * 111.00257 * 206.38695 * 10 9 2 40 40 H 1.08995 * 110.36774 * 155.84642 * 11 10 9 41 41 H 1.09002 * 110.37384 * 278.06707 * 11 10 9 42 42 H 0.96994 * 119.99873 * 359.97438 * 15 13 12 43 43 H 1.08999 * 109.47280 * 299.99898 * 16 15 13 44 44 H 1.09004 * 109.47501 * 60.00187 * 16 15 13 45 45 H 0.96995 * 119.99964 * 359.97438 * 19 17 16 46 46 H 0.97003 * 119.99529 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 6 1.3946 2.3864 -0.7433 5 6 1.8612 3.6875 -0.7388 6 6 2.9787 4.0186 0.0045 7 6 3.6293 3.0485 0.7438 8 6 3.1624 1.7473 0.7398 9 6 2.0549 -0.7477 -1.2438 10 6 2.3556 -2.1673 -0.6945 11 6 2.8619 -1.8472 0.7341 12 7 2.0332 -0.7135 1.1829 13 6 1.7793 -0.3853 2.4652 14 8 1.0043 0.5164 2.7199 15 7 2.3843 -1.0565 3.4651 16 6 2.1087 -0.6993 4.8589 17 6 2.9055 -1.5935 5.7736 18 8 3.6317 -2.4456 5.3071 19 7 2.8103 -1.4470 7.1100 20 6 3.5356 -2.2601 7.9422 21 1 4.1829 -3.0183 7.5267 22 6 3.4379 -2.1087 9.3199 23 7 2.6506 -1.1858 9.8253 24 14 4.4256 -3.2171 10.4536 25 1 5.2279 -4.1670 9.6417 26 1 5.3330 -2.3891 11.2880 27 1 3.5005 -3.9766 11.3325 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 0.5213 2.1278 -1.3237 32 1 1.3528 4.4455 -1.3162 33 1 3.3435 5.0350 0.0076 34 1 4.5026 3.3070 1.3242 35 1 3.6711 0.9893 1.3169 36 1 1.2908 -0.7885 -2.0201 37 1 2.9624 -0.2774 -1.6221 38 1 1.4503 -2.7734 -0.6616 39 1 3.1306 -2.6580 -1.2834 40 1 2.7165 -2.7060 1.3894 41 1 3.9141 -1.5637 0.7092 42 1 3.0022 -1.7760 3.2619 43 1 2.3910 0.3394 5.0304 44 1 1.0453 -0.8252 5.0629 45 1 2.2293 -0.7658 7.4830 46 1 2.5827 -1.0799 10.7871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883695983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:21 Heat of formation + Delta-G solvation = -31.590406 kcal Electronic energy + Delta-G solvation = -28591.666983 eV Core-core repulsion = 24674.299438 eV Total energy + Delta-G solvation = -3917.367545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96222 -39.05183 -38.23482 -37.36428 -34.45783 -33.77456 -32.64179 -31.72251 -31.33254 -30.81269 -29.30265 -27.43181 -26.10555 -24.59492 -23.37410 -22.46364 -22.05176 -20.81106 -19.62487 -19.14865 -18.23900 -17.85787 -16.85663 -16.28319 -15.73115 -15.42089 -15.20605 -14.94592 -14.73412 -14.55847 -14.22975 -13.99224 -13.84115 -13.71138 -13.40074 -13.29602 -13.11417 -13.02367 -12.50208 -12.32088 -12.14516 -12.03042 -11.86167 -11.71906 -11.62517 -11.41299 -11.14017 -10.99960 -10.88363 -10.72954 -10.40671 -10.31907 -9.84069 -9.64013 -8.90846 -8.89158 -8.73378 -8.61497 -8.41905 -8.09032 -6.50646 -3.92661 1.33959 1.41624 2.65961 3.10556 3.22677 3.29332 3.41047 3.74910 3.76213 4.04434 4.18824 4.31223 4.50078 4.57683 4.80811 4.85160 4.91710 4.96836 5.01571 5.09230 5.18140 5.20882 5.39584 5.44679 5.50601 5.53118 5.58857 5.64832 5.67235 5.77915 5.89307 5.93489 5.99632 6.02209 6.02483 6.09241 6.17035 6.40218 6.44772 6.51148 6.65097 6.80178 6.99186 7.23094 7.46886 7.93529 8.22474 8.46170 8.84857 9.05568 9.40597 9.88388 10.66351 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.002671 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.469955 B =10478.577554 C =11248.803258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.224 3.776 3 C -0.075 4.075 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.119 4.119 8 C -0.096 4.096 9 C -0.119 4.119 10 C -0.129 4.129 11 C 0.095 3.905 12 N -0.631 5.631 13 C 0.723 3.277 14 O -0.583 6.583 15 N -0.724 5.724 16 C 0.129 3.871 17 C 0.430 3.570 18 O -0.598 6.598 19 N -0.550 5.550 20 C -0.304 4.304 21 H 0.106 0.894 22 C 0.025 3.975 23 N -0.894 5.894 24 Si 0.932 3.068 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.406 0.594 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 4.794 -23.276 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.138 3.862 3 C -0.076 4.076 4 C -0.131 4.131 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.137 4.137 8 C -0.114 4.114 9 C -0.157 4.157 10 C -0.167 4.167 11 C -0.028 4.028 12 N -0.369 5.369 13 C 0.425 3.575 14 O -0.461 6.461 15 N -0.382 5.382 16 C 0.001 3.999 17 C 0.215 3.785 18 O -0.485 6.485 19 N -0.185 5.185 20 C -0.433 4.433 21 H 0.123 0.877 22 C -0.178 4.178 23 N -0.535 5.535 24 Si 0.759 3.241 25 H -0.192 1.192 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.243 0.757 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.073 4.946 -23.027 23.643 hybrid contribution 0.436 -0.370 1.003 1.155 sum -1.636 4.576 -22.023 22.553 Atomic orbital electron populations 1.22233 0.93407 1.02432 1.03316 1.19558 0.94181 0.88096 0.84344 1.19985 0.95428 0.94964 0.97208 1.20929 0.99586 0.92810 0.99788 1.21055 0.96925 0.96213 0.99851 1.21103 0.96343 0.99130 0.97719 1.21135 1.00131 0.93246 0.99162 1.20945 0.96020 0.96440 0.98021 1.22736 1.02067 0.95131 0.95753 1.22747 1.02114 0.96680 0.95161 1.22317 0.95062 0.89452 0.95950 1.47592 1.54232 1.31673 1.03425 1.15331 0.81020 0.81989 0.79149 1.90902 1.39512 1.33317 1.82362 1.44825 1.49212 1.39609 1.04531 1.20776 1.00158 0.99038 0.79970 1.19760 0.87258 0.87847 0.83597 1.90483 1.44070 1.38478 1.75424 1.41796 1.40125 1.32672 1.03866 1.19770 1.22378 1.14190 0.86978 0.87658 1.25324 0.97415 0.97464 0.97556 1.69632 1.37488 1.32688 1.13666 0.85763 0.79181 0.79569 0.79612 1.19152 1.20621 1.20625 0.91902 0.92296 0.90154 0.86111 0.86307 0.86418 0.86315 0.86550 0.89685 0.90297 0.90380 0.89694 0.90361 0.91403 0.75655 0.90093 0.90090 0.77027 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 7.84 37.16 0.29 -1.46 16 2 C 0.22 2.54 0.67 -131.99 -0.09 2.45 16 3 C -0.07 -0.93 4.15 -104.62 -0.43 -1.37 16 4 C -0.11 -1.24 9.17 -39.58 -0.36 -1.60 16 5 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 6 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 7 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 8 C -0.10 -1.30 8.73 -39.58 -0.35 -1.65 16 9 C -0.12 -0.95 6.01 -24.90 -0.15 -1.10 16 10 C -0.13 -0.96 7.09 -24.58 -0.17 -1.14 16 11 C 0.10 0.97 6.47 -2.53 -0.02 0.96 16 12 N -0.63 -8.27 1.91 -162.70 -0.31 -8.58 16 13 C 0.72 12.23 6.88 -86.92 -0.60 11.63 16 14 O -0.58 -11.57 14.65 5.29 0.08 -11.49 16 15 N -0.72 -12.67 5.49 -66.41 -0.36 -13.04 16 16 C 0.13 2.47 6.15 -5.19 -0.03 2.43 16 17 C 0.43 9.97 7.85 -10.98 -0.09 9.88 16 18 O -0.60 -15.35 15.24 5.56 0.08 -15.27 16 19 N -0.55 -13.75 5.29 -10.96 -0.06 -13.81 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 21 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -24.03 13.05 55.50 0.72 -23.30 16 24 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.06 0.55 6.63 -51.93 -0.34 0.21 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.17 6.61 -51.93 -0.34 0.83 16 31 H 0.12 1.07 6.50 -52.48 -0.34 0.73 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.68 6.71 -52.49 -0.35 1.33 16 36 H 0.08 0.54 7.83 -51.93 -0.41 0.14 16 37 H 0.08 0.62 7.84 -51.93 -0.41 0.22 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.82 7.50 -51.93 -0.39 0.43 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.41 6.98 6.04 -40.82 -0.25 6.73 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.40 9.57 7.90 -40.82 -0.32 9.24 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -32.33 374.90 -9.12 -41.45 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -6.47 Total: 16.97 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -3.43 Total: 5.85 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.01 Total: -58.73 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: 0.16 Total: -26.76 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.33 -9.12 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.858 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds