Wall clock time and date at job start Tue Mar 31 2020 16:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.87133 * 2 1 4 4 C 1.38243 * 120.00336 * 321.62038 * 3 2 1 5 5 C 1.38228 * 120.00076 * 179.72958 * 4 3 2 6 6 C 1.38235 * 120.00185 * 0.26779 * 5 4 3 7 7 C 1.38234 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.38234 * 119.99905 * 141.83523 * 3 2 1 9 9 C 1.54324 * 109.88109 * 238.98671 * 2 1 3 10 10 C 1.55159 * 102.93916 * 262.62116 * 9 2 1 11 11 C 1.54910 * 101.58144 * 324.49461 * 10 9 2 12 12 N 1.47023 * 110.01218 * 121.09760 * 2 1 3 13 13 C 1.34777 * 125.64875 * 300.52922 * 12 2 1 14 14 O 1.21588 * 119.99832 * 5.18784 * 13 12 2 15 15 N 1.34775 * 119.99937 * 185.18521 * 13 12 2 16 16 C 1.46497 * 119.99825 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46858 * 180.02562 * 16 15 13 18 18 O 1.21282 * 120.00139 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99721 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99902 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99383 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00172 * 179.97438 * 20 19 17 23 23 N 1.31420 * 119.99662 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47197 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46842 * 119.99770 * 24 22 20 27 27 H 1.48497 * 109.47205 * 239.99826 * 24 22 20 28 28 H 1.08999 * 109.47406 * 60.69779 * 1 2 3 29 29 H 1.08998 * 109.47098 * 180.70286 * 1 2 3 30 30 H 1.09003 * 109.47111 * 300.69729 * 1 2 3 31 31 H 1.08003 * 119.99548 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.99745 * 180.26044 * 5 4 3 33 33 H 1.07995 * 120.00127 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.00093 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.00413 * 0.06365 * 8 3 2 36 36 H 1.08997 * 110.71961 * 20.97989 * 9 2 1 37 37 H 1.08995 * 110.72014 * 144.07902 * 9 2 1 38 38 H 1.08995 * 111.00532 * 82.56967 * 10 9 2 39 39 H 1.08999 * 111.00257 * 206.38695 * 10 9 2 40 40 H 1.08995 * 110.36774 * 155.84642 * 11 10 9 41 41 H 1.09002 * 110.37384 * 278.06707 * 11 10 9 42 42 H 0.96994 * 119.99873 * 359.97438 * 15 13 12 43 43 H 1.08999 * 109.47280 * 299.99898 * 16 15 13 44 44 H 1.09004 * 109.47501 * 60.00187 * 16 15 13 45 45 H 0.96995 * 119.99964 * 359.97438 * 19 17 16 46 46 H 0.97003 * 119.99529 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 6 1.3946 2.3864 -0.7433 5 6 1.8612 3.6875 -0.7388 6 6 2.9787 4.0186 0.0045 7 6 3.6293 3.0485 0.7438 8 6 3.1624 1.7473 0.7398 9 6 2.0549 -0.7477 -1.2438 10 6 2.3556 -2.1673 -0.6945 11 6 2.8619 -1.8472 0.7341 12 7 2.0332 -0.7135 1.1829 13 6 1.7793 -0.3853 2.4652 14 8 1.0043 0.5164 2.7199 15 7 2.3843 -1.0565 3.4651 16 6 2.1087 -0.6993 4.8589 17 6 2.9055 -1.5935 5.7736 18 8 3.6317 -2.4456 5.3071 19 7 2.8103 -1.4470 7.1100 20 6 3.5356 -2.2601 7.9422 21 1 4.1829 -3.0183 7.5267 22 6 3.4379 -2.1087 9.3199 23 7 2.6506 -1.1858 9.8253 24 14 4.4256 -3.2171 10.4536 25 1 5.2279 -4.1670 9.6417 26 1 5.3330 -2.3891 11.2880 27 1 3.5005 -3.9766 11.3325 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 0.5213 2.1278 -1.3237 32 1 1.3528 4.4455 -1.3162 33 1 3.3435 5.0350 0.0076 34 1 4.5026 3.3070 1.3242 35 1 3.6711 0.9893 1.3169 36 1 1.2908 -0.7885 -2.0201 37 1 2.9624 -0.2774 -1.6221 38 1 1.4503 -2.7734 -0.6616 39 1 3.1306 -2.6580 -1.2834 40 1 2.7165 -2.7060 1.3894 41 1 3.9141 -1.5637 0.7092 42 1 3.0022 -1.7760 3.2619 43 1 2.3910 0.3394 5.0304 44 1 1.0453 -0.8252 5.0629 45 1 2.2293 -0.7658 7.4830 46 1 2.5827 -1.0799 10.7871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883695983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:20 Heat of formation + Delta-G solvation = -51.728653 kcal Electronic energy + Delta-G solvation = -28592.540243 eV Core-core repulsion = 24674.299438 eV Total energy + Delta-G solvation = -3918.240805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99514 -40.50351 -39.67788 -38.45569 -36.26236 -35.38702 -33.68002 -33.35410 -32.59527 -31.70805 -30.17095 -29.06228 -26.92203 -26.45079 -24.39335 -23.33836 -22.91069 -21.84634 -21.31017 -20.50417 -19.99583 -19.14985 -17.87612 -17.46337 -17.23664 -16.82576 -16.57086 -16.42579 -16.05830 -15.68960 -15.59837 -15.41262 -15.16064 -14.72816 -14.41701 -14.25760 -14.16844 -13.96255 -13.85275 -13.59946 -13.55539 -13.28754 -13.08906 -12.91778 -12.84714 -12.55548 -12.46093 -12.13734 -12.11557 -11.84195 -11.63634 -11.59584 -11.50344 -11.18583 -10.58244 -10.28629 -10.11069 -9.79788 -9.70816 -9.45106 -8.52422 -6.02869 0.46747 0.52317 1.33923 1.40812 1.47784 1.57400 1.87164 2.11610 2.26820 2.82468 2.93488 3.14586 3.16524 3.54013 3.67139 3.81201 3.98368 4.13029 4.14601 4.19086 4.20962 4.26892 4.38320 4.41322 4.46592 4.58047 4.65323 4.68272 4.73213 4.87640 4.90552 4.95944 5.10508 5.13123 5.15498 5.24022 5.27804 5.32383 5.37777 5.50949 5.58474 5.63371 5.71507 5.90603 6.06119 6.13922 6.45970 6.93726 7.01726 7.40306 7.53757 7.91897 8.64822 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.002671 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.469955 B =10478.577554 C =11248.803258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.214 3.786 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.131 4.131 7 C -0.136 4.136 8 C -0.122 4.122 9 C -0.109 4.109 10 C -0.117 4.117 11 C 0.085 3.915 12 N -0.626 5.626 13 C 0.722 3.278 14 O -0.617 6.617 15 N -0.726 5.726 16 C 0.144 3.856 17 C 0.435 3.565 18 O -0.623 6.623 19 N -0.559 5.559 20 C -0.336 4.336 21 H 0.087 0.913 22 C -0.011 4.011 23 N -0.916 5.916 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.407 0.593 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.398 0.602 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 4.781 -25.233 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.129 3.871 3 C -0.087 4.087 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.140 4.140 9 C -0.147 4.147 10 C -0.155 4.155 11 C -0.037 4.037 12 N -0.363 5.363 13 C 0.423 3.577 14 O -0.497 6.497 15 N -0.384 5.384 16 C 0.015 3.985 17 C 0.222 3.778 18 O -0.511 6.511 19 N -0.194 5.194 20 C -0.465 4.465 21 H 0.105 0.895 22 C -0.212 4.212 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.245 0.755 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.232 0.768 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.408 4.932 -25.030 25.625 hybrid contribution 0.533 -0.313 1.544 1.663 sum -1.876 4.619 -23.487 24.010 Atomic orbital electron populations 1.22186 0.93275 1.02524 1.02869 1.19909 0.94330 0.88067 0.84806 1.20187 0.95211 0.95989 0.97354 1.21248 1.00027 0.92766 0.99595 1.21461 0.96492 0.96753 0.99334 1.21412 0.96458 0.99823 0.97226 1.21324 1.00781 0.93390 0.99950 1.20934 0.97235 0.96659 0.99212 1.22746 1.02851 0.94579 0.94541 1.22756 1.03070 0.96663 0.93020 1.22572 0.95050 0.88255 0.97861 1.47654 1.53793 1.32292 1.02584 1.15425 0.80630 0.81460 0.80137 1.90871 1.40953 1.34672 1.83209 1.44762 1.49616 1.39972 1.04081 1.20541 0.99671 0.98099 0.80172 1.20345 0.86550 0.87462 0.83461 1.90457 1.45108 1.39649 1.75879 1.41839 1.40378 1.32791 1.04402 1.19774 1.23623 1.15078 0.88053 0.89547 1.26152 0.98061 0.98591 0.98367 1.69698 1.38075 1.33495 1.14379 0.84798 0.77867 0.77759 0.77472 1.19368 1.19612 1.19577 0.89030 0.91823 0.93895 0.83778 0.83412 0.84232 0.85997 0.88576 0.87109 0.90012 0.89743 0.87177 0.90923 0.91096 0.75525 0.89565 0.89280 0.76761 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 7.84 71.98 0.56 -2.61 16 2 C 0.21 4.59 0.67 3.21 0.00 4.59 16 3 C -0.09 -2.09 4.15 -19.86 -0.08 -2.17 16 4 C -0.12 -2.37 9.17 22.27 0.20 -2.17 16 5 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 6 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 7 C -0.14 -3.42 10.05 22.27 0.22 -3.19 16 8 C -0.12 -3.39 8.73 22.27 0.19 -3.20 16 9 C -0.11 -1.45 6.01 31.78 0.19 -1.26 16 10 C -0.12 -1.45 7.09 31.99 0.23 -1.22 16 11 C 0.08 1.68 6.47 86.85 0.56 2.24 16 12 N -0.63 -16.42 1.91 -786.93 -1.50 -17.93 16 13 C 0.72 25.03 6.88 179.05 1.23 26.26 16 14 O -0.62 -25.20 14.65 -3.99 -0.06 -25.26 16 15 N -0.73 -26.17 5.49 -482.29 -2.65 -28.82 16 16 C 0.14 5.65 6.15 85.63 0.53 6.18 16 17 C 0.43 20.73 7.85 87.66 0.69 21.41 16 18 O -0.62 -32.85 15.24 -3.04 -0.05 -32.90 16 19 N -0.56 -28.72 5.29 -306.99 -1.62 -30.34 16 20 C -0.34 -18.75 9.68 84.04 0.81 -17.94 16 21 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 22 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 23 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 24 Si 1.00 42.09 29.55 68.60 2.03 44.12 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 H 0.09 1.34 6.63 -2.39 -0.02 1.33 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.24 6.61 -2.39 -0.02 1.23 16 31 H 0.14 2.10 6.50 -2.91 -0.02 2.08 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.10 2.95 6.71 -2.91 -0.02 2.94 16 36 H 0.11 0.95 7.83 -2.39 -0.02 0.93 16 37 H 0.08 1.08 7.84 -2.39 -0.02 1.06 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 1.51 7.50 -2.39 -0.02 1.50 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.41 14.44 6.04 -92.71 -0.56 13.88 16 43 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 45 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 46 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -71.41 374.90 2.42 -68.99 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -0.28 Total: 48.89 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 6.26 Total: 22.24 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -5.49 Total: -126.08 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -0.10 Total: -58.16 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -71.41 2.42 -68.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.260 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds