Wall clock time and date at job start Tue Mar 31 2020 17:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.45081 * 2 1 4 4 C 1.53042 * 109.46181 * 119.96860 * 2 1 3 5 5 C 1.53189 * 109.31523 * 181.38252 * 4 2 1 6 6 N 1.46925 * 108.77794 * 305.36612 * 5 4 2 7 7 C 1.34774 * 120.63066 * 233.58836 * 6 5 4 8 8 O 1.21361 * 119.99731 * 7.14297 * 7 6 5 9 9 C 1.49364 * 120.00072 * 187.14438 * 7 6 5 10 10 O 1.21363 * 119.99931 * 6.58394 * 9 7 6 11 11 N 1.34775 * 120.00151 * 186.58196 * 9 7 6 12 12 C 1.39111 * 120.00319 * 185.57732 * 11 9 7 13 13 C 1.39712 * 119.57531 * 18.66474 * 12 11 9 14 14 C 1.38655 * 119.49057 * 180.02562 * 13 12 11 15 15 C 1.38341 * 118.67148 * 0.02562 * 14 13 12 16 16 C 1.40593 * 119.13774 * 0.02562 * 15 14 13 17 17 C 1.41340 * 119.78363 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00550 * 7.12971 * 17 16 15 19 19 C 1.40029 * 119.99869 * 187.12553 * 17 16 15 20 20 N 1.30747 * 120.00089 * 195.09262 * 19 17 16 21 21 Si 1.86804 * 120.00034 * 15.08937 * 19 17 16 22 22 H 1.48500 * 109.47043 * 270.00455 * 21 19 17 23 23 H 1.48506 * 109.46854 * 30.00193 * 21 19 17 24 24 H 1.48502 * 109.47179 * 150.00039 * 21 19 17 25 25 N 1.31933 * 119.58319 * 198.96712 * 12 11 9 26 26 C 1.46930 * 118.73829 * 53.85316 * 6 5 4 27 27 C 1.53041 * 109.45862 * 240.03124 * 2 1 3 28 28 H 1.09000 * 109.46841 * 300.03630 * 1 2 3 29 29 H 1.08994 * 109.47319 * 60.03420 * 1 2 3 30 30 H 1.08997 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47125 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46707 * 299.96715 * 3 2 1 33 33 H 1.08993 * 109.47060 * 59.96447 * 3 2 1 34 34 H 1.09001 * 109.49978 * 61.42899 * 4 2 1 35 35 H 1.09004 * 109.52136 * 301.35176 * 4 2 1 36 36 H 1.08995 * 109.58624 * 185.57070 * 5 4 2 37 37 H 1.09002 * 109.70027 * 65.21815 * 5 4 2 38 38 H 0.97001 * 119.99819 * 5.57404 * 11 9 7 39 39 H 1.07996 * 120.25427 * 0.02562 * 13 12 11 40 40 H 1.08004 * 120.66365 * 179.97438 * 14 13 12 41 41 H 1.08007 * 120.42906 * 180.02562 * 15 14 13 42 42 H 0.96993 * 119.99633 * 354.94590 * 20 19 17 43 43 H 1.09000 * 109.58523 * 65.93466 * 26 6 5 44 44 H 1.09001 * 109.58323 * 186.35744 * 26 6 5 45 45 H 1.08997 * 109.50236 * 298.56965 * 27 2 1 46 46 H 1.09007 * 109.49846 * 58.63262 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0395 1.4427 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6887 1.2642 6 7 4.0679 -1.2489 -0.0001 7 6 4.9620 -2.2573 -0.0001 8 8 5.2669 -2.7980 1.0428 9 6 5.5777 -2.7095 -1.2836 10 8 5.3660 -2.0942 -2.3081 11 7 6.3685 -3.8007 -1.3041 12 6 7.0346 -4.1552 -2.4728 13 6 7.2068 -3.2060 -3.4833 14 6 7.8706 -3.5614 -4.6477 15 6 8.3445 -4.8550 -4.7731 16 6 8.1387 -5.7645 -3.7209 17 6 8.6167 -7.0897 -3.8347 18 1 9.2363 -7.3702 -4.6736 19 6 8.2869 -8.0392 -2.8597 20 7 8.9493 -9.1644 -2.7924 21 14 6.9004 -7.6981 -1.6551 22 1 7.4455 -7.0177 -0.4529 23 1 5.8871 -6.8255 -2.3009 24 1 6.2666 -8.9797 -1.2540 25 7 7.4904 -5.3851 -2.6152 26 6 3.5755 -0.6849 -1.2643 27 6 2.0398 -0.7208 -1.2501 28 1 -0.3633 0.5144 0.8897 29 1 -0.3634 0.5133 -0.8902 30 1 -0.3633 -1.0276 0.0005 31 1 3.1295 1.4431 0.0005 32 1 1.6764 1.9562 -0.8903 33 1 1.6755 1.9565 0.8896 34 1 1.6978 -1.7557 1.2383 35 1 1.6572 -0.2213 2.1401 36 1 3.9416 -1.2846 2.0984 37 1 3.9164 0.3400 1.3684 38 1 6.4732 -4.3388 -0.5039 39 1 6.8259 -2.2032 -3.3586 40 1 8.0140 -2.8429 -5.4412 41 1 8.8659 -5.1623 -5.6676 42 1 9.6191 -9.3735 -3.4620 43 1 3.9188 0.3449 -1.3633 44 1 3.9486 -1.2784 -2.0990 45 1 1.6977 -1.7557 -1.2383 46 1 1.6567 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889894178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:28 Heat of formation + Delta-G solvation = -30.788017 kcal Electronic energy + Delta-G solvation = -28778.586588 eV Core-core repulsion = 24861.253836 eV Total energy + Delta-G solvation = -3917.332751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.26068 -39.79449 -38.52919 -37.93793 -35.30297 -34.25721 -33.53175 -31.43906 -31.16231 -29.77265 -28.84836 -27.65805 -25.90427 -25.10747 -23.65153 -23.13176 -21.87249 -21.29364 -20.00515 -18.92470 -18.33349 -17.63080 -17.05191 -16.49222 -16.06841 -15.60136 -15.21498 -15.13350 -14.81214 -14.70226 -14.54446 -14.36500 -14.05443 -13.78498 -13.41274 -13.13089 -12.95153 -12.63819 -12.36022 -12.29338 -12.21802 -12.09640 -12.02009 -11.91560 -11.55078 -11.44585 -11.06815 -10.99077 -10.75593 -10.64771 -10.57597 -10.42922 -10.07970 -9.75881 -9.14100 -8.90601 -8.86760 -8.60525 -7.92202 -7.53512 -7.32055 -4.82192 1.25126 2.23196 2.47870 2.60221 3.25174 3.43395 3.50879 3.61094 3.90476 4.27743 4.32286 4.38147 4.43784 4.46374 4.54569 4.83299 4.91015 5.07498 5.10515 5.31481 5.34925 5.36730 5.43401 5.46843 5.50323 5.57571 5.65595 5.69636 5.73185 5.75768 5.80053 5.94065 5.94807 6.05124 6.16263 6.20030 6.33120 6.45278 6.51282 6.91326 7.00441 7.08319 7.33906 7.40440 7.49507 7.66563 7.71039 8.00779 8.09492 8.28742 8.58101 9.34343 9.93517 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.003075 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.196398 B = 9102.821821 C = 9793.229904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.106 3.894 6 N -0.580 5.580 7 C 0.513 3.487 8 O -0.518 6.518 9 C 0.511 3.489 10 O -0.488 6.488 11 N -0.619 5.619 12 C 0.377 3.623 13 C -0.309 4.309 14 C -0.036 4.036 15 C -0.271 4.271 16 C 0.272 3.728 17 C -0.476 4.476 18 H 0.085 0.915 19 C 0.048 3.952 20 N -0.800 5.800 21 Si 1.140 2.860 22 H -0.286 1.286 23 H -0.278 1.278 24 H -0.326 1.326 25 N -0.590 5.590 26 C 0.061 3.939 27 C -0.124 4.124 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.419 0.581 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.285 0.715 43 H 0.071 0.929 44 H 0.147 0.853 45 H 0.066 0.934 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.021 18.029 5.927 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.203 4.203 4 C -0.160 4.160 5 C -0.016 4.016 6 N -0.314 5.314 7 C 0.295 3.705 8 O -0.394 6.394 9 C 0.293 3.707 10 O -0.364 6.364 11 N -0.264 5.264 12 C 0.146 3.854 13 C -0.334 4.334 14 C -0.060 4.060 15 C -0.294 4.294 16 C 0.148 3.852 17 C -0.508 4.508 18 H 0.103 0.897 19 C -0.174 4.174 20 N -0.421 5.421 21 Si 0.973 3.027 22 H -0.213 1.213 23 H -0.205 1.205 24 H -0.258 1.258 25 N -0.315 5.315 26 C -0.060 4.060 27 C -0.162 4.162 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.257 0.743 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.163 0.837 45 H 0.085 0.915 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.774 16.912 7.676 23.732 hybrid contribution 1.136 0.933 -1.712 2.256 sum -13.638 17.845 5.964 23.238 Atomic orbital electron populations 1.21854 0.94352 1.01830 1.01715 1.20581 0.95561 0.95560 0.95246 1.21985 1.01472 0.95091 1.01771 1.21970 0.94692 1.01404 0.97956 1.21772 0.94217 0.99186 0.86416 1.47903 1.41058 1.33783 1.08627 1.19951 0.80590 0.80810 0.89144 1.90771 1.61083 1.54529 1.33039 1.19984 0.80049 0.81518 0.89163 1.90386 1.57504 1.54553 1.33931 1.42954 1.43297 1.26068 1.14114 1.18019 0.91882 0.90309 0.85184 1.21477 1.14454 1.00912 0.96521 1.20904 0.94029 0.95305 0.95793 1.21649 1.11614 0.95112 1.00976 1.18189 0.87328 0.93918 0.85717 1.20703 1.27309 0.93243 1.09511 0.89677 1.27689 0.99378 0.91538 0.98800 1.70620 1.16752 1.23864 1.30869 0.82170 0.74424 0.71513 0.74572 1.21299 1.20510 1.25833 1.66184 1.22802 1.14898 1.27612 1.23151 0.93892 1.01406 0.87503 1.22091 0.95449 1.01071 0.97600 0.92691 0.92547 0.92647 0.92130 0.92505 0.92692 0.91257 0.90564 0.88750 0.90779 0.74329 0.84394 0.87434 0.87529 0.90379 0.91048 0.83686 0.91481 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.47 37.16 0.31 -0.60 16 2 C -0.07 -0.51 0.77 -154.47 -0.12 -0.63 16 3 C -0.15 -0.96 7.71 37.16 0.29 -0.67 16 4 C -0.12 -0.96 4.91 -26.61 -0.13 -1.09 16 5 C 0.11 1.01 5.97 -3.71 -0.02 0.99 16 6 N -0.58 -6.91 2.97 -173.05 -0.51 -7.43 16 7 C 0.51 7.73 7.74 -11.63 -0.09 7.64 16 8 O -0.52 -8.76 15.94 5.49 0.09 -8.67 16 9 C 0.51 8.71 7.60 -11.63 -0.09 8.62 16 10 O -0.49 -8.42 9.91 5.49 0.05 -8.37 16 11 N -0.62 -12.07 5.39 -11.83 -0.06 -12.13 16 12 C 0.38 8.56 7.51 -155.09 -1.16 7.40 16 13 C -0.31 -6.64 8.83 -38.88 -0.34 -6.99 16 14 C -0.04 -0.76 10.15 -39.39 -0.40 -1.16 16 15 C -0.27 -6.29 9.83 -38.66 -0.38 -6.67 16 16 C 0.27 7.05 6.31 -85.00 -0.54 6.51 16 17 C -0.48 -12.77 9.52 -37.73 -0.36 -13.13 16 18 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 19 C 0.05 1.30 5.52 -17.34 -0.10 1.21 16 20 N -0.80 -21.55 13.65 55.55 0.76 -20.79 16 21 Si 1.14 27.83 25.97 -169.99 -4.41 23.42 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.87 6.42 56.52 0.36 -6.50 16 24 H -0.33 -7.82 7.11 56.52 0.40 -7.42 16 25 N -0.59 -14.90 4.87 -10.28 -0.05 -14.95 16 26 C 0.06 0.65 5.59 -3.48 -0.02 0.63 16 27 C -0.12 -1.09 4.92 -26.39 -0.13 -1.22 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 4.97 -51.93 -0.26 0.17 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 1.00 7.00 -51.93 -0.36 0.63 16 37 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 38 H 0.42 7.87 8.34 -40.82 -0.34 7.53 16 39 H 0.14 2.79 5.32 -52.38 -0.28 2.51 16 40 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 41 H 0.11 2.29 8.06 -52.48 -0.42 1.87 16 42 H 0.28 7.32 8.72 -40.82 -0.36 6.96 16 43 H 0.07 0.68 6.69 -51.93 -0.35 0.34 16 44 H 0.15 1.88 4.20 -55.25 -0.23 1.65 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -29.09 360.04 -8.42 -37.51 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.43 Total: 5.14 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.28 Total: 0.84 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.13 Total: -55.30 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.14 Total: -17.04 kcal Atomic # 14 Polarization: 27.83 SS G_CDS: -4.41 Total: 23.42 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.09 -8.42 -37.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889894178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.725 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds