Wall clock time and date at job start Tue Mar 31 2020 17:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.45081 * 2 1 4 4 C 1.53042 * 109.46181 * 119.96860 * 2 1 3 5 5 C 1.53189 * 109.31523 * 181.38252 * 4 2 1 6 6 N 1.46925 * 108.77794 * 305.36612 * 5 4 2 7 7 C 1.34774 * 120.63066 * 233.58836 * 6 5 4 8 8 O 1.21361 * 119.99731 * 7.14297 * 7 6 5 9 9 C 1.49364 * 120.00072 * 187.14438 * 7 6 5 10 10 O 1.21363 * 119.99931 * 6.58394 * 9 7 6 11 11 N 1.34775 * 120.00151 * 186.58196 * 9 7 6 12 12 C 1.39111 * 120.00319 * 185.57732 * 11 9 7 13 13 C 1.39712 * 119.57531 * 18.66474 * 12 11 9 14 14 C 1.38655 * 119.49057 * 180.02562 * 13 12 11 15 15 C 1.38341 * 118.67148 * 0.02562 * 14 13 12 16 16 C 1.40593 * 119.13774 * 0.02562 * 15 14 13 17 17 C 1.41340 * 119.78363 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00550 * 7.12971 * 17 16 15 19 19 C 1.40029 * 119.99869 * 187.12553 * 17 16 15 20 20 N 1.30747 * 120.00089 * 195.09262 * 19 17 16 21 21 Si 1.86804 * 120.00034 * 15.08937 * 19 17 16 22 22 H 1.48500 * 109.47043 * 270.00455 * 21 19 17 23 23 H 1.48506 * 109.46854 * 30.00193 * 21 19 17 24 24 H 1.48502 * 109.47179 * 150.00039 * 21 19 17 25 25 N 1.31933 * 119.58319 * 198.96712 * 12 11 9 26 26 C 1.46930 * 118.73829 * 53.85316 * 6 5 4 27 27 C 1.53041 * 109.45862 * 240.03124 * 2 1 3 28 28 H 1.09000 * 109.46841 * 300.03630 * 1 2 3 29 29 H 1.08994 * 109.47319 * 60.03420 * 1 2 3 30 30 H 1.08997 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47125 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46707 * 299.96715 * 3 2 1 33 33 H 1.08993 * 109.47060 * 59.96447 * 3 2 1 34 34 H 1.09001 * 109.49978 * 61.42899 * 4 2 1 35 35 H 1.09004 * 109.52136 * 301.35176 * 4 2 1 36 36 H 1.08995 * 109.58624 * 185.57070 * 5 4 2 37 37 H 1.09002 * 109.70027 * 65.21815 * 5 4 2 38 38 H 0.97001 * 119.99819 * 5.57404 * 11 9 7 39 39 H 1.07996 * 120.25427 * 0.02562 * 13 12 11 40 40 H 1.08004 * 120.66365 * 179.97438 * 14 13 12 41 41 H 1.08007 * 120.42906 * 180.02562 * 15 14 13 42 42 H 0.96993 * 119.99633 * 354.94590 * 20 19 17 43 43 H 1.09000 * 109.58523 * 65.93466 * 26 6 5 44 44 H 1.09001 * 109.58323 * 186.35744 * 26 6 5 45 45 H 1.08997 * 109.50236 * 298.56965 * 27 2 1 46 46 H 1.09007 * 109.49846 * 58.63262 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0395 1.4427 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6887 1.2642 6 7 4.0679 -1.2489 -0.0001 7 6 4.9620 -2.2573 -0.0001 8 8 5.2669 -2.7980 1.0428 9 6 5.5777 -2.7095 -1.2836 10 8 5.3660 -2.0942 -2.3081 11 7 6.3685 -3.8007 -1.3041 12 6 7.0346 -4.1552 -2.4728 13 6 7.2068 -3.2060 -3.4833 14 6 7.8706 -3.5614 -4.6477 15 6 8.3445 -4.8550 -4.7731 16 6 8.1387 -5.7645 -3.7209 17 6 8.6167 -7.0897 -3.8347 18 1 9.2363 -7.3702 -4.6736 19 6 8.2869 -8.0392 -2.8597 20 7 8.9493 -9.1644 -2.7924 21 14 6.9004 -7.6981 -1.6551 22 1 7.4455 -7.0177 -0.4529 23 1 5.8871 -6.8255 -2.3009 24 1 6.2666 -8.9797 -1.2540 25 7 7.4904 -5.3851 -2.6152 26 6 3.5755 -0.6849 -1.2643 27 6 2.0398 -0.7208 -1.2501 28 1 -0.3633 0.5144 0.8897 29 1 -0.3634 0.5133 -0.8902 30 1 -0.3633 -1.0276 0.0005 31 1 3.1295 1.4431 0.0005 32 1 1.6764 1.9562 -0.8903 33 1 1.6755 1.9565 0.8896 34 1 1.6978 -1.7557 1.2383 35 1 1.6572 -0.2213 2.1401 36 1 3.9416 -1.2846 2.0984 37 1 3.9164 0.3400 1.3684 38 1 6.4732 -4.3388 -0.5039 39 1 6.8259 -2.2032 -3.3586 40 1 8.0140 -2.8429 -5.4412 41 1 8.8659 -5.1623 -5.6676 42 1 9.6191 -9.3735 -3.4620 43 1 3.9188 0.3449 -1.3633 44 1 3.9486 -1.2784 -2.0990 45 1 1.6977 -1.7557 -1.2383 46 1 1.6567 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889894178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:27 Heat of formation + Delta-G solvation = -47.393247 kcal Electronic energy + Delta-G solvation = -28779.306644 eV Core-core repulsion = 24861.253836 eV Total energy + Delta-G solvation = -3918.052808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51970 -41.07162 -39.86225 -39.23830 -36.70100 -35.63429 -35.15834 -33.01242 -32.20076 -31.52936 -29.68996 -28.15690 -27.55462 -26.53061 -24.47065 -24.25953 -23.63751 -22.62973 -21.43420 -20.38488 -19.77517 -18.76068 -18.43740 -17.78957 -17.34114 -16.95429 -16.90080 -16.15416 -15.98363 -15.82024 -15.63996 -15.42751 -15.21059 -15.04498 -14.87989 -14.55619 -14.33019 -14.27544 -13.85113 -13.71699 -13.11126 -12.86382 -12.82918 -12.78912 -12.70162 -12.50898 -12.28124 -12.23343 -12.14740 -11.91590 -11.72305 -11.63425 -11.40832 -11.25404 -11.10644 -10.44375 -10.17869 -9.84615 -9.81408 -9.33542 -9.29851 -6.81803 -0.11778 0.69035 0.82925 1.01496 1.52080 1.62972 1.92285 1.94793 2.23588 2.36931 2.60310 3.00097 3.54240 3.74344 3.76650 3.82377 4.03046 4.08830 4.21219 4.27417 4.32869 4.47027 4.58964 4.61023 4.67964 4.68388 4.71892 4.79090 4.84507 4.88604 5.02583 5.05075 5.07563 5.11160 5.21477 5.22129 5.30867 5.34191 5.38674 5.43206 5.46364 5.57300 5.66330 5.69690 5.87693 5.95633 6.10825 6.35874 6.47999 6.63810 6.71599 7.47421 7.92395 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.003075 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.196398 B = 9102.821821 C = 9793.229904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.144 4.144 4 C -0.118 4.118 5 C 0.102 3.898 6 N -0.567 5.567 7 C 0.514 3.486 8 O -0.542 6.542 9 C 0.514 3.486 10 O -0.488 6.488 11 N -0.628 5.628 12 C 0.364 3.636 13 C -0.298 4.298 14 C -0.026 4.026 15 C -0.284 4.284 16 C 0.257 3.743 17 C -0.508 4.508 18 H 0.073 0.927 19 C 0.023 3.977 20 N -0.824 5.824 21 Si 1.170 2.830 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.322 1.322 25 N -0.609 5.609 26 C 0.060 3.940 27 C -0.121 4.121 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.420 0.580 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.284 0.716 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.053 0.947 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.933 21.603 6.293 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 C -0.201 4.201 4 C -0.156 4.156 5 C -0.019 4.019 6 N -0.300 5.300 7 C 0.296 3.704 8 O -0.420 6.420 9 C 0.297 3.703 10 O -0.363 6.363 11 N -0.273 5.273 12 C 0.134 3.866 13 C -0.322 4.322 14 C -0.050 4.050 15 C -0.306 4.306 16 C 0.132 3.868 17 C -0.541 4.541 18 H 0.092 0.908 19 C -0.195 4.195 20 N -0.447 5.447 21 Si 1.002 2.998 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.255 1.255 25 N -0.334 5.334 26 C -0.060 4.060 27 C -0.159 4.159 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.258 0.742 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.137 0.863 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.142 0.858 45 H 0.071 0.929 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.725 20.541 8.043 27.682 hybrid contribution 1.606 0.135 -1.876 2.473 sum -15.118 20.675 6.167 26.345 Atomic orbital electron populations 1.21824 0.93469 1.01664 1.02536 1.20573 0.96219 0.95920 0.93962 1.21962 1.01098 0.94302 1.02693 1.21968 0.93218 1.01066 0.99342 1.22024 0.95410 0.99825 0.84627 1.48065 1.39358 1.32281 1.10273 1.19577 0.81393 0.81695 0.87782 1.90769 1.62354 1.55679 1.33237 1.20417 0.79267 0.80549 0.90075 1.90394 1.57200 1.54328 1.34414 1.43036 1.43931 1.27124 1.13238 1.18369 0.91828 0.89857 0.86578 1.21878 1.12928 1.01305 0.96130 1.21360 0.92060 0.95088 0.96522 1.21842 1.12164 0.95792 1.00824 1.18396 0.87553 0.94136 0.86744 1.20682 1.29114 0.94316 1.09957 0.90836 1.28288 1.00062 0.91524 0.99630 1.70633 1.17921 1.24564 1.31613 0.81754 0.73100 0.71242 0.73749 1.20929 1.21374 1.25460 1.66110 1.23216 1.16361 1.27756 1.23158 0.95237 1.01603 0.86001 1.22080 0.93854 1.00773 0.99214 0.91646 0.91996 0.93340 0.92606 0.91943 0.91547 0.92620 0.88366 0.89853 0.88573 0.74209 0.82638 0.83158 0.86339 0.90526 0.89260 0.85815 0.92861 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.47 71.98 0.61 -0.77 16 2 C -0.07 -0.77 0.77 -52.15 -0.04 -0.81 16 3 C -0.14 -1.34 7.71 71.98 0.56 -0.78 16 4 C -0.12 -1.54 4.91 30.67 0.15 -1.39 16 5 C 0.10 1.70 5.97 86.36 0.52 2.21 16 6 N -0.57 -12.45 2.97 -819.75 -2.43 -14.88 16 7 C 0.51 14.94 7.74 87.24 0.68 15.61 16 8 O -0.54 -18.02 15.94 -3.28 -0.05 -18.08 16 9 C 0.51 16.92 7.60 87.24 0.66 17.58 16 10 O -0.49 -15.94 9.91 -3.29 -0.03 -15.97 16 11 N -0.63 -24.09 5.39 -309.70 -1.67 -25.75 16 12 C 0.36 16.22 7.51 133.31 1.00 17.22 16 13 C -0.30 -12.12 8.83 22.73 0.20 -11.92 16 14 C -0.03 -1.03 10.15 22.39 0.23 -0.80 16 15 C -0.28 -12.88 9.83 22.87 0.22 -12.66 16 16 C 0.26 13.39 6.31 40.20 0.25 13.65 16 17 C -0.51 -28.13 9.52 23.47 0.22 -27.90 16 18 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 19 C 0.02 1.28 5.52 85.29 0.47 1.75 16 20 N -0.82 -45.87 13.65 21.84 0.30 -45.57 16 21 Si 1.17 57.71 25.97 68.60 1.78 59.49 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.29 -14.28 6.42 99.48 0.64 -13.64 16 24 H -0.32 -15.44 7.11 99.48 0.71 -14.73 16 25 N -0.61 -30.80 4.87 -186.43 -0.91 -31.71 16 26 C 0.06 1.14 5.59 86.51 0.48 1.62 16 27 C -0.12 -1.83 4.92 30.82 0.15 -1.67 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.58 4.97 -2.39 -0.01 0.57 16 32 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.08 1.63 7.00 -2.39 -0.02 1.61 16 37 H 0.10 1.23 6.70 -2.39 -0.02 1.22 16 38 H 0.42 15.81 8.34 -92.71 -0.77 15.04 16 39 H 0.16 5.80 5.32 -3.15 -0.02 5.78 16 40 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 42 H 0.28 15.20 8.72 -92.71 -0.81 14.39 16 43 H 0.09 1.42 6.69 -2.39 -0.02 1.40 16 44 H 0.12 2.96 4.20 -57.08 -0.24 2.72 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -63.25 360.04 3.26 -59.99 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.09 Total: 21.53 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.36 Total: 10.95 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -4.71 Total: -117.91 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.08 Total: -34.05 kcal Atomic # 14 Polarization: 57.71 SS G_CDS: 1.78 Total: 59.49 kcal Total: -63.25 3.26 -59.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889894178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.599 kcal (2) G-P(sol) polarization free energy of solvation -63.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds