Wall clock time and date at job start Tue Mar 31 2020 16:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.52254 * 2 1 4 4 C 1.53034 * 109.49532 * 239.92408 * 2 1 3 5 5 C 1.53041 * 109.53810 * 301.40725 * 4 2 1 6 6 C 1.53184 * 109.31531 * 298.63872 * 5 4 2 7 7 N 1.46932 * 108.77670 * 54.63248 * 6 5 4 8 8 C 1.34775 * 120.62956 * 126.41034 * 7 6 5 9 9 O 1.21361 * 120.00020 * 173.09553 * 8 7 6 10 10 C 1.49366 * 120.00205 * 353.09057 * 8 7 6 11 11 O 1.21353 * 120.00244 * 353.65979 * 10 8 7 12 12 N 1.34774 * 120.00029 * 173.66432 * 10 8 7 13 13 C 1.39120 * 120.00165 * 184.42999 * 12 10 8 14 14 C 1.39709 * 119.58012 * 175.01485 * 13 12 10 15 15 C 1.38644 * 119.49143 * 179.97438 * 14 13 12 16 16 C 1.38348 * 118.67571 * 0.02562 * 15 14 13 17 17 C 1.40598 * 119.13401 * 359.97438 * 16 15 14 18 18 C 1.41333 * 119.78842 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99620 * 3.02455 * 18 17 16 20 20 C 1.40029 * 120.00316 * 183.02647 * 18 17 16 21 21 N 1.30739 * 119.99777 * 3.41489 * 20 18 17 22 22 Si 1.86800 * 120.00036 * 183.41243 * 20 18 17 23 23 H 1.48500 * 109.46820 * 95.00529 * 22 20 18 24 24 H 1.48494 * 109.47034 * 215.00216 * 22 20 18 25 25 H 1.48502 * 109.47079 * 335.00380 * 22 20 18 26 26 N 1.31940 * 119.57420 * 354.74261 * 13 12 10 27 27 C 1.46919 * 118.73655 * 306.39627 * 7 6 5 28 28 H 1.08999 * 109.46976 * 299.91974 * 1 2 3 29 29 H 1.09007 * 109.47072 * 59.91370 * 1 2 3 30 30 H 1.08995 * 109.46903 * 179.91451 * 1 2 3 31 31 H 1.09000 * 109.46887 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47612 * 300.08426 * 3 2 1 33 33 H 1.09002 * 109.46712 * 60.08183 * 3 2 1 34 34 H 1.08994 * 109.46670 * 61.43590 * 4 2 1 35 35 H 1.09011 * 109.45686 * 181.39473 * 4 2 1 36 36 H 1.08996 * 109.49679 * 178.68446 * 5 4 2 37 37 H 1.09000 * 109.52014 * 58.61276 * 5 4 2 38 38 H 1.08999 * 109.58891 * 294.84920 * 6 5 4 39 39 H 1.09005 * 109.70606 * 174.48936 * 6 5 4 40 40 H 0.97007 * 120.00203 * 4.42756 * 12 10 8 41 41 H 1.08003 * 120.25101 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.66143 * 180.02562 * 15 14 13 43 43 H 1.07990 * 120.43490 * 179.97438 * 16 15 14 44 44 H 0.97004 * 119.99965 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58517 * 293.80910 * 27 7 6 46 46 H 1.09010 * 109.58678 * 173.39609 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0407 -0.7230 -1.2484 5 6 1.5030 -2.1557 -1.2661 6 6 2.0140 -2.9039 -0.0309 7 7 1.6516 -2.1381 1.1695 8 6 0.9748 -2.7221 2.1782 9 8 0.7905 -2.1185 3.2148 10 6 0.4515 -4.1122 2.0202 11 8 0.5338 -4.6733 0.9474 12 7 -0.1121 -4.7433 3.0692 13 6 -0.5158 -6.0691 2.9484 14 6 -1.0023 -6.7468 4.0691 15 6 -1.4046 -8.0679 3.9465 16 6 -1.3103 -8.6784 2.7086 17 6 -0.8122 -7.9429 1.6188 18 6 -0.7095 -8.5531 0.3481 19 1 -1.0584 -9.5651 0.2053 20 6 -0.1553 -7.8455 -0.7257 21 7 0.3280 -6.6453 -0.5378 22 14 -0.1064 -8.6164 -2.4265 23 1 -1.2902 -8.1722 -3.2054 24 1 1.1334 -8.1938 -3.1260 25 1 -0.1237 -10.0959 -2.3000 26 7 -0.4393 -6.6688 1.7757 27 6 2.0413 -0.7238 1.2495 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5152 -0.8893 30 1 -0.3633 -1.0276 -0.0015 31 1 3.1313 1.4411 -0.0005 32 1 1.6773 1.9567 -0.8892 33 1 1.6796 1.9558 0.8908 34 1 1.6988 -0.1957 -2.1389 35 1 3.1306 -0.7443 -1.2353 36 1 1.8481 -2.6626 -2.1672 37 1 0.4133 -2.1359 -1.2545 38 1 3.0980 -3.0042 -0.0869 39 1 1.5575 -3.8927 0.0148 40 1 -0.2364 -4.2730 3.9086 41 1 -1.0645 -6.2453 5.0236 42 1 -1.7840 -8.6096 4.8003 43 1 -1.6152 -9.7065 2.5810 44 1 0.7122 -6.1552 -1.2816 45 1 3.1274 -0.6463 1.2980 46 1 1.6007 -0.2731 2.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889922231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:03 Heat of formation + Delta-G solvation = -0.602662 kcal Electronic energy + Delta-G solvation = -29634.648856 eV Core-core repulsion = 25718.625040 eV Total energy + Delta-G solvation = -3916.023816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.73903 -39.17681 -37.99766 -37.26539 -34.84668 -33.82672 -33.05040 -31.86768 -30.41797 -29.27156 -27.42811 -27.25017 -26.06766 -25.56328 -23.56830 -22.16513 -21.68442 -20.87604 -19.42631 -18.51961 -17.90465 -16.85315 -16.63979 -16.07590 -15.50897 -14.92648 -14.86272 -14.75293 -14.52713 -14.42707 -14.32137 -13.80293 -13.70445 -13.33181 -13.07001 -12.92040 -12.78810 -12.32149 -12.07505 -12.06299 -12.00784 -11.78321 -11.56731 -11.23223 -11.11965 -11.03030 -11.02024 -10.71848 -10.70146 -10.55328 -10.35598 -10.31381 -9.99712 -9.82491 -9.12754 -8.61846 -8.48168 -8.06996 -7.31790 -7.10396 -6.27651 -4.47753 1.87489 2.73653 2.79805 3.05604 3.12098 3.14679 3.21280 3.89573 3.92582 3.99382 4.52008 4.66073 4.74308 4.83085 4.85880 5.11868 5.21555 5.35802 5.42764 5.52236 5.58574 5.66781 5.72232 5.75441 5.78049 5.92654 5.93415 5.99118 6.03607 6.05711 6.16528 6.18556 6.29685 6.45197 6.47911 6.55740 6.58975 6.76805 6.80168 7.18345 7.35627 7.44537 7.51379 7.73425 7.83277 8.03756 8.15346 8.35151 8.60466 8.89816 8.98037 10.09930 10.37184 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.004361 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.679843 B = 6418.269136 C = 8286.430548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.130 4.130 6 C 0.043 3.957 7 N -0.579 5.579 8 C 0.509 3.491 9 O -0.538 6.538 10 C 0.472 3.528 11 O -0.377 6.377 12 N -0.635 5.635 13 C 0.367 3.633 14 C -0.347 4.347 15 C -0.036 4.036 16 C -0.300 4.300 17 C 0.272 3.728 18 C -0.424 4.424 19 H 0.083 0.917 20 C 0.062 3.938 21 N -0.665 5.665 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.263 1.263 26 N -0.474 5.474 27 C 0.118 3.882 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.171 0.829 40 H 0.412 0.588 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.271 0.729 45 H 0.066 0.934 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 12.410 -1.789 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 C -0.196 4.196 4 C -0.148 4.148 5 C -0.168 4.168 6 C -0.077 4.077 7 N -0.312 5.312 8 C 0.292 3.708 9 O -0.416 6.416 10 C 0.250 3.750 11 O -0.242 6.242 12 N -0.283 5.283 13 C 0.129 3.871 14 C -0.373 4.373 15 C -0.060 4.060 16 C -0.323 4.323 17 C 0.147 3.853 18 C -0.454 4.454 19 H 0.102 0.898 20 C -0.166 4.166 21 N -0.284 5.284 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.187 1.187 26 N -0.193 5.193 27 C -0.004 4.004 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.187 0.813 40 H 0.248 0.752 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.633 12.975 -2.923 14.084 hybrid contribution -0.239 -0.299 0.409 0.561 sum 4.394 12.676 -2.513 13.649 Atomic orbital electron populations 1.21882 0.94086 1.02503 1.01357 1.20901 0.96487 0.95159 0.95443 1.21800 1.00897 0.94887 1.01994 1.21634 1.00253 0.96124 0.96746 1.21875 1.01805 0.94920 0.98244 1.23442 1.00729 1.01312 0.82263 1.47898 1.53853 1.10891 1.18557 1.20627 0.78633 0.88124 0.83435 1.90679 1.57906 1.65724 1.27251 1.20209 0.82014 0.86435 0.86304 1.90712 1.48153 1.62966 1.22413 1.43037 1.59024 1.11291 1.14906 1.18543 0.93269 0.83424 0.91883 1.20515 1.22069 0.97493 0.97237 1.20587 0.95753 0.93482 0.96187 1.21660 1.15695 1.00516 0.94407 1.18348 0.87691 0.86703 0.92514 1.19593 1.33552 0.99976 0.92292 0.89849 1.26120 0.95080 0.94963 1.00463 1.70280 1.19432 1.07387 1.31295 0.86477 0.78372 0.80570 0.82407 1.19691 1.20225 1.18714 1.68607 1.22045 1.10416 1.18271 1.21732 0.99405 0.80727 0.98575 0.92841 0.92740 0.91942 0.92567 0.92325 0.92471 0.91989 0.92051 0.90845 0.91110 0.92493 0.81337 0.75186 0.88710 0.88351 0.88361 0.91709 0.91539 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.99 37.16 0.30 -1.33 16 2 C -0.08 -0.84 0.77 -154.39 -0.12 -0.95 16 3 C -0.14 -1.16 8.48 37.16 0.32 -0.84 16 4 C -0.11 -1.14 4.71 -26.69 -0.13 -1.27 16 5 C -0.13 -1.64 5.74 -26.61 -0.15 -1.79 16 6 C 0.04 0.63 6.27 -3.71 -0.02 0.61 16 7 N -0.58 -8.75 2.41 -173.31 -0.42 -9.17 16 8 C 0.51 9.04 7.74 -11.63 -0.09 8.95 16 9 O -0.54 -10.07 15.94 5.49 0.09 -9.98 16 10 C 0.47 9.62 7.74 -11.63 -0.09 9.53 16 11 O -0.38 -8.49 8.86 5.49 0.05 -8.44 16 12 N -0.64 -13.03 5.37 -11.83 -0.06 -13.09 16 13 C 0.37 8.77 7.42 -155.08 -1.15 7.62 16 14 C -0.35 -7.69 9.95 -38.88 -0.39 -8.08 16 15 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 16 C -0.30 -7.28 9.83 -38.65 -0.38 -7.66 16 17 C 0.27 7.33 6.54 -85.00 -0.56 6.77 16 18 C -0.42 -11.09 9.14 -37.73 -0.34 -11.43 16 19 H 0.08 2.06 7.85 -52.49 -0.41 1.64 16 20 C 0.06 1.54 5.49 -17.35 -0.10 1.44 16 21 N -0.66 -16.82 9.02 55.55 0.50 -16.32 16 22 Si 0.90 18.20 29.56 -169.99 -5.03 13.18 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 N -0.47 -12.69 5.75 -10.27 -0.06 -12.74 16 27 C 0.12 1.47 5.09 -3.72 -0.02 1.45 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.06 0.86 5.97 -51.93 -0.31 0.55 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.98 6.33 -51.93 -0.33 0.66 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.17 3.09 3.78 -56.79 -0.21 2.87 16 40 H 0.41 7.32 8.18 -40.82 -0.33 6.99 16 41 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 42 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 44 H 0.27 6.29 8.29 -40.82 -0.34 5.95 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.20 7.05 -51.92 -0.37 0.84 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -29.02 364.34 -9.36 -38.38 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.60 Total: 10.89 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -3.32 Total: 1.82 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.04 Total: -51.32 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.14 Total: -18.42 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.02 -9.36 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889922231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.773 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds