Wall clock time and date at job start Tue Mar 31 2020 16:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.52254 * 2 1 4 4 C 1.53034 * 109.49532 * 239.92408 * 2 1 3 5 5 C 1.53041 * 109.53810 * 301.40725 * 4 2 1 6 6 C 1.53184 * 109.31531 * 298.63872 * 5 4 2 7 7 N 1.46932 * 108.77670 * 54.63248 * 6 5 4 8 8 C 1.34775 * 120.62956 * 126.41034 * 7 6 5 9 9 O 1.21361 * 120.00020 * 173.09553 * 8 7 6 10 10 C 1.49366 * 120.00205 * 353.09057 * 8 7 6 11 11 O 1.21353 * 120.00244 * 353.65979 * 10 8 7 12 12 N 1.34774 * 120.00029 * 173.66432 * 10 8 7 13 13 C 1.39120 * 120.00165 * 184.42999 * 12 10 8 14 14 C 1.39709 * 119.58012 * 175.01485 * 13 12 10 15 15 C 1.38644 * 119.49143 * 179.97438 * 14 13 12 16 16 C 1.38348 * 118.67571 * 0.02562 * 15 14 13 17 17 C 1.40598 * 119.13401 * 359.97438 * 16 15 14 18 18 C 1.41333 * 119.78842 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99620 * 3.02455 * 18 17 16 20 20 C 1.40029 * 120.00316 * 183.02647 * 18 17 16 21 21 N 1.30739 * 119.99777 * 3.41489 * 20 18 17 22 22 Si 1.86800 * 120.00036 * 183.41243 * 20 18 17 23 23 H 1.48500 * 109.46820 * 95.00529 * 22 20 18 24 24 H 1.48494 * 109.47034 * 215.00216 * 22 20 18 25 25 H 1.48502 * 109.47079 * 335.00380 * 22 20 18 26 26 N 1.31940 * 119.57420 * 354.74261 * 13 12 10 27 27 C 1.46919 * 118.73655 * 306.39627 * 7 6 5 28 28 H 1.08999 * 109.46976 * 299.91974 * 1 2 3 29 29 H 1.09007 * 109.47072 * 59.91370 * 1 2 3 30 30 H 1.08995 * 109.46903 * 179.91451 * 1 2 3 31 31 H 1.09000 * 109.46887 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47612 * 300.08426 * 3 2 1 33 33 H 1.09002 * 109.46712 * 60.08183 * 3 2 1 34 34 H 1.08994 * 109.46670 * 61.43590 * 4 2 1 35 35 H 1.09011 * 109.45686 * 181.39473 * 4 2 1 36 36 H 1.08996 * 109.49679 * 178.68446 * 5 4 2 37 37 H 1.09000 * 109.52014 * 58.61276 * 5 4 2 38 38 H 1.08999 * 109.58891 * 294.84920 * 6 5 4 39 39 H 1.09005 * 109.70606 * 174.48936 * 6 5 4 40 40 H 0.97007 * 120.00203 * 4.42756 * 12 10 8 41 41 H 1.08003 * 120.25101 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.66143 * 180.02562 * 15 14 13 43 43 H 1.07990 * 120.43490 * 179.97438 * 16 15 14 44 44 H 0.97004 * 119.99965 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58517 * 293.80910 * 27 7 6 46 46 H 1.09010 * 109.58678 * 173.39609 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0407 -0.7230 -1.2484 5 6 1.5030 -2.1557 -1.2661 6 6 2.0140 -2.9039 -0.0309 7 7 1.6516 -2.1381 1.1695 8 6 0.9748 -2.7221 2.1782 9 8 0.7905 -2.1185 3.2148 10 6 0.4515 -4.1122 2.0202 11 8 0.5338 -4.6733 0.9474 12 7 -0.1121 -4.7433 3.0692 13 6 -0.5158 -6.0691 2.9484 14 6 -1.0023 -6.7468 4.0691 15 6 -1.4046 -8.0679 3.9465 16 6 -1.3103 -8.6784 2.7086 17 6 -0.8122 -7.9429 1.6188 18 6 -0.7095 -8.5531 0.3481 19 1 -1.0584 -9.5651 0.2053 20 6 -0.1553 -7.8455 -0.7257 21 7 0.3280 -6.6453 -0.5378 22 14 -0.1064 -8.6164 -2.4265 23 1 -1.2902 -8.1722 -3.2054 24 1 1.1334 -8.1938 -3.1260 25 1 -0.1237 -10.0959 -2.3000 26 7 -0.4393 -6.6688 1.7757 27 6 2.0413 -0.7238 1.2495 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5152 -0.8893 30 1 -0.3633 -1.0276 -0.0015 31 1 3.1313 1.4411 -0.0005 32 1 1.6773 1.9567 -0.8892 33 1 1.6796 1.9558 0.8908 34 1 1.6988 -0.1957 -2.1389 35 1 3.1306 -0.7443 -1.2353 36 1 1.8481 -2.6626 -2.1672 37 1 0.4133 -2.1359 -1.2545 38 1 3.0980 -3.0042 -0.0869 39 1 1.5575 -3.8927 0.0148 40 1 -0.2364 -4.2730 3.9086 41 1 -1.0645 -6.2453 5.0236 42 1 -1.7840 -8.6096 4.8003 43 1 -1.6152 -9.7065 2.5810 44 1 0.7122 -6.1552 -1.2816 45 1 3.1274 -0.6463 1.2980 46 1 1.6007 -0.2731 2.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889922231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:02 Heat of formation + Delta-G solvation = -16.100261 kcal Electronic energy + Delta-G solvation = -29635.320882 eV Core-core repulsion = 25718.625040 eV Total energy + Delta-G solvation = -3916.695842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.11676 -40.66123 -39.43720 -38.82429 -36.37080 -35.29291 -34.70819 -32.92076 -32.26425 -31.08674 -28.46269 -28.17987 -27.58421 -26.99372 -25.04440 -23.45301 -23.22251 -22.52223 -20.96924 -19.69953 -19.40238 -18.41593 -18.17931 -17.61835 -16.87298 -16.45156 -16.29291 -16.22988 -15.86341 -15.67845 -15.57270 -15.46370 -14.90646 -14.70115 -14.65392 -14.20814 -13.92158 -13.77799 -13.74195 -13.21061 -12.90832 -12.88825 -12.74311 -12.69958 -12.62818 -12.55745 -12.31811 -12.14091 -11.99301 -11.81450 -11.74515 -11.59426 -11.42230 -11.25013 -10.90933 -10.11619 -9.92817 -9.73805 -9.09512 -8.92373 -8.09249 -6.40554 0.33310 1.03120 1.26891 1.35896 1.44769 1.54992 1.57291 2.29167 2.32951 2.50271 2.98938 3.31727 3.65868 3.79707 3.85898 4.02142 4.10442 4.24803 4.32719 4.41328 4.48421 4.57101 4.66161 4.69504 4.73274 4.80958 4.86582 4.89027 4.93360 4.94935 4.96174 5.06936 5.09508 5.13754 5.18548 5.27621 5.35076 5.40449 5.45415 5.52660 5.64255 5.80700 5.90574 6.02120 6.14195 6.28374 6.49001 6.73481 6.82727 7.05153 7.29207 8.24469 8.56585 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.004361 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.679843 B = 6418.269136 C = 8286.430548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.132 4.132 4 C -0.104 4.104 5 C -0.125 4.125 6 C 0.043 3.957 7 N -0.569 5.569 8 C 0.512 3.488 9 O -0.551 6.551 10 C 0.462 3.538 11 O -0.400 6.400 12 N -0.631 5.631 13 C 0.348 3.652 14 C -0.344 4.344 15 C -0.033 4.033 16 C -0.322 4.322 17 C 0.239 3.761 18 C -0.460 4.460 19 H 0.086 0.914 20 C 0.019 3.981 21 N -0.691 5.691 22 Si 0.973 3.027 23 H -0.270 1.270 24 H -0.268 1.268 25 H -0.260 1.260 26 N -0.503 5.503 27 C 0.114 3.886 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.423 0.577 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.275 0.725 45 H 0.086 0.914 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 13.978 -2.313 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.075 4.075 3 C -0.190 4.190 4 C -0.141 4.141 5 C -0.164 4.164 6 C -0.078 4.078 7 N -0.300 5.300 8 C 0.295 3.705 9 O -0.431 6.431 10 C 0.242 3.758 11 O -0.266 6.266 12 N -0.280 5.280 13 C 0.110 3.890 14 C -0.369 4.369 15 C -0.057 4.057 16 C -0.345 4.345 17 C 0.114 3.886 18 C -0.491 4.491 19 H 0.104 0.896 20 C -0.207 4.207 21 N -0.310 5.310 22 Si 0.794 3.206 23 H -0.195 1.195 24 H -0.193 1.193 25 H -0.183 1.183 26 N -0.223 5.223 27 C -0.008 4.008 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.154 0.846 40 H 0.261 0.739 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.575 14.578 -3.433 15.981 hybrid contribution -0.537 -0.743 0.673 1.137 sum 5.038 13.835 -2.760 14.980 Atomic orbital electron populations 1.21863 0.95118 1.00708 1.01959 1.20907 0.95577 0.96598 0.94452 1.21757 1.01688 0.92821 1.02724 1.21614 1.01012 0.94247 0.97233 1.21818 1.00648 0.96589 0.97297 1.23285 1.01238 1.00165 0.83087 1.47965 1.52311 1.12055 1.17696 1.20106 0.79368 0.86978 0.84091 1.90667 1.59008 1.65608 1.27786 1.20786 0.81634 0.87493 0.85927 1.90770 1.48593 1.64040 1.23168 1.43048 1.58891 1.10400 1.15706 1.18973 0.93390 0.84668 0.91989 1.20941 1.20310 0.97657 0.98001 1.21029 0.94485 0.93611 0.96587 1.21851 1.16556 1.01132 0.94962 1.18823 0.88580 0.87434 0.93780 1.19900 1.35306 1.00572 0.93285 0.89629 1.26894 0.94441 0.95411 1.03971 1.70406 1.19668 1.08397 1.32536 0.85341 0.78466 0.79578 0.77216 1.19540 1.19270 1.18338 1.68569 1.23100 1.10747 1.19913 1.22015 1.00591 0.78719 0.99430 0.93130 0.91266 0.94889 0.91268 0.91149 0.92272 0.90338 0.90584 0.89949 0.93007 0.91020 0.84558 0.73856 0.85455 0.84423 0.87427 0.91371 0.89538 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 7.99 71.98 0.58 -2.50 16 2 C -0.07 -1.41 0.77 -52.11 -0.04 -1.45 16 3 C -0.13 -1.77 8.48 71.98 0.61 -1.16 16 4 C -0.10 -1.87 4.71 30.62 0.14 -1.73 16 5 C -0.13 -3.06 5.74 30.67 0.18 -2.88 16 6 C 0.04 1.26 6.27 86.36 0.54 1.80 16 7 N -0.57 -17.02 2.41 -820.59 -1.98 -19.00 16 8 C 0.51 18.49 7.74 87.24 0.68 19.17 16 9 O -0.55 -20.68 15.94 -3.28 -0.05 -20.73 16 10 C 0.46 19.52 7.74 87.24 0.67 20.20 16 11 O -0.40 -18.87 8.86 -3.26 -0.03 -18.90 16 12 N -0.63 -26.48 5.37 -309.70 -1.66 -28.14 16 13 C 0.35 16.92 7.42 133.30 0.99 17.91 16 14 C -0.34 -14.92 9.95 22.72 0.23 -14.70 16 15 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 16 C -0.32 -15.86 9.83 22.87 0.22 -15.64 16 17 C 0.24 13.32 6.54 40.20 0.26 13.58 16 18 C -0.46 -25.00 9.14 23.47 0.21 -24.79 16 19 H 0.09 4.39 7.85 -2.91 -0.02 4.36 16 20 C 0.02 0.96 5.49 85.29 0.47 1.42 16 21 N -0.69 -36.31 9.02 21.84 0.20 -36.12 16 22 Si 0.97 38.20 29.56 68.60 2.03 40.23 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 N -0.50 -27.92 5.75 -186.42 -1.07 -28.99 16 27 C 0.11 2.64 5.09 86.36 0.44 3.08 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.03 0.92 5.97 -2.39 -0.01 0.90 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.46 6.33 -2.39 -0.02 1.45 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 39 H 0.14 5.21 3.78 -79.39 -0.30 4.91 16 40 H 0.42 15.14 8.18 -92.70 -0.76 14.38 16 41 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 42 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.11 4.91 8.06 -2.92 -0.02 4.89 16 44 H 0.28 13.25 8.29 -92.71 -0.77 12.49 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 46 H 0.08 2.08 7.05 -2.38 -0.02 2.06 16 Total: -1.00 -65.33 364.34 3.80 -61.53 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.04 Total: 38.97 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.41 Total: 11.14 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -4.52 Total: -112.25 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.08 Total: -39.63 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -65.33 3.80 -61.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889922231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.434 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds