Wall clock time and date at job start Tue Mar 31 2020 16:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 110.05274 * 2 1 4 4 C 1.53865 * 110.03324 * 121.42222 * 2 1 3 5 5 C 1.54265 * 106.64211 * 119.31078 * 4 2 1 6 6 C 1.54890 * 104.19611 * 23.58255 * 5 4 2 7 7 H 1.09000 * 110.75822 * 80.37031 * 6 5 4 8 8 N 1.46498 * 110.75958 * 203.55879 * 6 5 4 9 9 C 1.34773 * 120.00273 * 273.54745 * 8 6 5 10 10 O 1.21355 * 119.99751 * 359.97438 * 9 8 6 11 11 C 1.49367 * 120.00308 * 179.97438 * 9 8 6 12 12 O 1.21359 * 119.99732 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00308 * 179.97438 * 11 9 8 14 14 C 1.39112 * 120.00162 * 174.85139 * 13 11 9 15 15 C 1.39708 * 119.57532 * 185.31380 * 14 13 11 16 16 C 1.38658 * 119.49160 * 179.97438 * 15 14 13 17 17 C 1.38351 * 118.66904 * 359.97438 * 16 15 14 18 18 C 1.40594 * 119.13501 * 0.02562 * 17 16 15 19 19 C 1.41338 * 119.78124 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00035 * 0.02562 * 19 18 17 21 21 C 1.40033 * 119.99654 * 179.97438 * 19 18 17 22 22 N 1.30738 * 120.00274 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47375 * 90.00287 * 23 21 19 25 25 H 1.48501 * 109.47324 * 210.00468 * 23 21 19 26 26 H 1.48505 * 109.47366 * 330.00127 * 23 21 19 27 27 N 1.31928 * 119.57753 * 5.03676 * 14 13 11 28 28 C 1.54377 * 110.04501 * 238.53309 * 2 1 3 29 29 H 1.09000 * 109.47444 * 300.02765 * 1 2 3 30 30 H 1.08999 * 109.47711 * 60.03338 * 1 2 3 31 31 H 1.09007 * 109.46869 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47570 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47470 * 299.96754 * 3 2 1 34 34 H 1.09001 * 109.47249 * 59.96548 * 3 2 1 35 35 H 1.08997 * 110.03964 * 359.97438 * 4 2 1 36 36 H 1.09009 * 110.03165 * 238.61899 * 4 2 1 37 37 H 1.09006 * 110.48886 * 142.26192 * 5 4 2 38 38 H 1.08997 * 110.48718 * 264.90420 * 5 4 2 39 39 H 0.97002 * 119.99905 * 93.54531 * 8 6 5 40 40 H 0.97007 * 119.99606 * 354.85027 * 13 11 9 41 41 H 1.08003 * 120.25783 * 0.02562 * 15 14 13 42 42 H 1.07998 * 120.66450 * 179.97438 * 16 15 14 43 43 H 1.07997 * 120.43165 * 179.97438 * 17 16 15 44 44 H 0.96995 * 120.00357 * 179.97438 * 22 21 19 45 45 H 1.09002 * 110.46161 * 98.41906 * 28 2 1 46 46 H 1.09000 * 110.61972 * 335.83377 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0571 -0.7536 1.2336 5 6 2.8882 -1.9406 0.7043 6 6 3.3146 -1.5014 -0.7185 7 1 4.1715 -0.8291 -0.6747 8 7 3.6138 -2.6670 -1.5539 9 6 4.8478 -3.2087 -1.5379 10 8 5.7112 -2.7306 -0.8317 11 6 5.1527 -4.3975 -2.3893 12 8 4.2891 -4.8758 -3.0951 13 7 6.3868 -4.9389 -2.3737 14 6 6.6424 -6.1082 -3.0826 15 6 7.8922 -6.7227 -2.9714 16 6 8.1449 -7.8884 -3.6785 17 6 7.1434 -8.4104 -4.4776 18 6 5.9068 -7.7451 -4.5475 19 6 4.8739 -8.2666 -5.3591 20 1 5.0358 -9.1736 -5.9227 21 6 3.6403 -7.6079 -5.4317 22 7 3.4442 -6.5102 -4.7491 23 14 2.2749 -8.2976 -6.5038 24 1 1.4456 -9.2364 -5.7063 25 1 1.4252 -7.1852 -6.9997 26 1 2.8685 -9.0194 -7.6580 27 7 5.6998 -6.6255 -3.8471 28 6 2.0591 -0.7570 -1.2370 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1446 1.4262 0.0005 33 1 1.6970 1.9546 -0.8902 34 1 1.6960 1.9549 0.8897 35 1 1.2230 -1.1190 1.8326 36 1 2.6860 -0.0952 1.8328 37 1 3.7644 -2.1028 1.3321 38 1 2.2784 -2.8429 0.6583 39 1 2.9238 -3.0489 -2.1187 40 1 7.0968 -4.5132 -1.8680 41 1 8.6553 -6.2937 -2.3390 42 1 9.1043 -8.3791 -3.6068 43 1 7.3096 -9.3167 -5.0409 44 1 2.5899 -6.0538 -4.7997 45 1 2.3302 -0.0555 -2.0259 46 1 1.3163 -1.4680 -1.5987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890052308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:14 Heat of formation + Delta-G solvation = -28.786260 kcal Electronic energy + Delta-G solvation = -28289.352890 eV Core-core repulsion = 24372.106942 eV Total energy + Delta-G solvation = -3917.245948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.39224 -39.32590 -38.31008 -37.14876 -34.85341 -34.02065 -33.03851 -31.23506 -30.37939 -29.22787 -28.67811 -27.58764 -25.82748 -25.00856 -23.80961 -21.83196 -21.23163 -20.57761 -19.71452 -18.89671 -18.25726 -17.16339 -16.71057 -16.07112 -15.45015 -15.24045 -15.16743 -14.70904 -14.48053 -14.12608 -14.05235 -13.73997 -13.60273 -13.53227 -13.35210 -13.25912 -12.88045 -12.35291 -12.13014 -12.02350 -11.95400 -11.75888 -11.49522 -11.20356 -11.12984 -11.00353 -10.92568 -10.81757 -10.77700 -10.68986 -10.64272 -10.52004 -9.97766 -9.79714 -9.09455 -9.07773 -8.96788 -8.03324 -7.32895 -7.05620 -6.22034 -4.45265 1.93423 2.79543 2.83187 3.08977 3.13451 3.16021 3.23620 3.96557 4.01447 4.05168 4.27584 4.35198 4.53528 4.86737 4.94847 5.00899 5.05522 5.12729 5.18548 5.23413 5.33521 5.38839 5.51806 5.63842 5.65701 5.72288 5.78288 5.90096 5.96934 5.97020 6.04062 6.06736 6.09673 6.18576 6.42215 6.47588 6.58249 6.75656 6.79711 7.15583 7.31183 7.50977 7.53451 7.76379 7.91279 8.05782 8.19205 8.37205 8.63356 8.93909 9.01957 10.14696 10.41321 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013569 B = 0.003152 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.985823 B = 8881.683913 C =10653.635009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.140 3.860 7 H 0.095 0.905 8 N -0.699 5.699 9 C 0.510 3.490 10 O -0.534 6.534 11 C 0.466 3.534 12 O -0.387 6.387 13 N -0.639 5.639 14 C 0.368 3.632 15 C -0.349 4.349 16 C -0.036 4.036 17 C -0.301 4.301 18 C 0.271 3.729 19 C -0.424 4.424 20 H 0.083 0.917 21 C 0.059 3.941 22 N -0.662 5.662 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.474 5.474 28 C -0.122 4.122 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.413 0.587 40 H 0.411 0.589 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.272 0.728 45 H 0.074 0.926 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 13.340 8.744 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.152 4.152 5 C -0.175 4.175 6 C 0.036 3.964 7 H 0.113 0.887 8 N -0.352 5.352 9 C 0.292 3.708 10 O -0.411 6.411 11 C 0.242 3.758 12 O -0.250 6.250 13 N -0.287 5.287 14 C 0.130 3.870 15 C -0.375 4.375 16 C -0.060 4.060 17 C -0.324 4.324 18 C 0.146 3.854 19 C -0.454 4.454 20 H 0.102 0.898 21 C -0.169 4.169 22 N -0.281 5.281 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.194 5.194 28 C -0.160 4.160 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.250 0.750 40 H 0.247 0.753 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.957 13.934 8.707 17.843 hybrid contribution 0.345 -0.641 -0.300 0.787 sum -6.612 13.293 8.407 17.061 Atomic orbital electron populations 1.21917 0.94125 1.01921 1.01671 1.21115 0.95631 0.95365 0.94659 1.21934 1.01148 0.94966 1.01675 1.22246 0.99404 0.96671 0.96835 1.22762 1.00098 0.98450 0.96192 1.22002 0.97910 0.86705 0.89811 0.88699 1.45754 1.12788 1.31244 1.45422 1.20819 0.82714 0.84724 0.82593 1.90686 1.46387 1.62504 1.41523 1.20152 0.84961 0.85385 0.85294 1.91208 1.43741 1.56573 1.33468 1.42999 1.11509 1.24847 1.49387 1.18550 0.90786 0.85973 0.91666 1.20519 0.97806 1.03898 1.15251 1.20586 0.96958 0.94023 0.94451 1.21650 0.96697 1.04584 1.09460 1.18373 0.90624 0.87028 0.89403 1.19589 0.95527 1.08252 1.22068 0.89849 1.26163 0.99663 0.95035 0.96059 1.70303 1.22117 1.09917 1.25802 0.86484 0.81022 0.79388 0.80864 1.19635 1.20300 1.18734 1.68645 1.27845 1.13096 1.09783 1.22774 0.96496 0.99230 0.97538 0.92644 0.92623 0.92407 0.92380 0.92615 0.92612 0.91433 0.91460 0.90988 0.91062 0.74990 0.75333 0.88730 0.88372 0.88385 0.91682 0.90735 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.16 37.16 0.30 -0.68 16 2 C -0.07 -0.52 0.94 -153.34 -0.14 -0.67 16 3 C -0.14 -0.99 8.15 37.16 0.30 -0.69 16 4 C -0.11 -0.95 6.11 -25.62 -0.16 -1.10 16 5 C -0.14 -1.44 6.51 -25.07 -0.16 -1.61 16 6 C 0.14 1.59 3.18 -65.94 -0.21 1.38 16 7 H 0.10 1.17 7.70 -51.93 -0.40 0.77 16 8 N -0.70 -9.72 5.20 -52.34 -0.27 -10.00 16 9 C 0.51 8.77 7.88 -11.63 -0.09 8.68 16 10 O -0.53 -9.73 16.21 5.49 0.09 -9.64 16 11 C 0.47 9.64 7.84 -11.63 -0.09 9.55 16 12 O -0.39 -9.19 12.24 5.49 0.07 -9.13 16 13 N -0.64 -13.37 5.37 -11.83 -0.06 -13.44 16 14 C 0.37 9.05 7.42 -155.10 -1.15 7.90 16 15 C -0.35 -7.90 9.96 -38.88 -0.39 -8.28 16 16 C -0.04 -0.81 10.15 -39.38 -0.40 -1.21 16 17 C -0.30 -7.47 9.83 -38.65 -0.38 -7.85 16 18 C 0.27 7.49 6.55 -85.00 -0.56 6.93 16 19 C -0.42 -11.39 9.14 -37.73 -0.34 -11.73 16 20 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 21 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 22 N -0.66 -17.57 8.99 55.55 0.50 -17.07 16 23 Si 0.90 18.67 29.56 -169.99 -5.02 13.65 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 N -0.47 -13.11 5.73 -10.28 -0.06 -13.17 16 28 C -0.12 -1.10 5.51 -25.01 -0.14 -1.24 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 36 H 0.07 0.53 7.67 -51.92 -0.40 0.13 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.41 5.58 8.01 -40.82 -0.33 5.26 16 40 H 0.41 7.39 8.18 -40.82 -0.33 7.06 16 41 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 42 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 44 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 45 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 46 H 0.08 0.68 7.74 -51.93 -0.40 0.28 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -31.00 377.71 -9.64 -40.64 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -6.86 Total: 11.67 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -3.70 Total: 0.79 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.10 Total: -53.67 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.16 Total: -18.76 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.00 -9.64 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890052308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.850 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds