Wall clock time and date at job start Tue Mar 31 2020 16:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 110.05274 * 2 1 4 4 C 1.53865 * 110.03324 * 121.42222 * 2 1 3 5 5 C 1.54265 * 106.64211 * 119.31078 * 4 2 1 6 6 C 1.54890 * 104.19611 * 23.58255 * 5 4 2 7 7 H 1.09000 * 110.75822 * 80.37031 * 6 5 4 8 8 N 1.46498 * 110.75958 * 203.55879 * 6 5 4 9 9 C 1.34773 * 120.00273 * 273.54745 * 8 6 5 10 10 O 1.21355 * 119.99751 * 359.97438 * 9 8 6 11 11 C 1.49367 * 120.00308 * 179.97438 * 9 8 6 12 12 O 1.21359 * 119.99732 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00308 * 179.97438 * 11 9 8 14 14 C 1.39112 * 120.00162 * 174.85139 * 13 11 9 15 15 C 1.39708 * 119.57532 * 185.31380 * 14 13 11 16 16 C 1.38658 * 119.49160 * 179.97438 * 15 14 13 17 17 C 1.38351 * 118.66904 * 359.97438 * 16 15 14 18 18 C 1.40594 * 119.13501 * 0.02562 * 17 16 15 19 19 C 1.41338 * 119.78124 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00035 * 0.02562 * 19 18 17 21 21 C 1.40033 * 119.99654 * 179.97438 * 19 18 17 22 22 N 1.30738 * 120.00274 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47375 * 90.00287 * 23 21 19 25 25 H 1.48501 * 109.47324 * 210.00468 * 23 21 19 26 26 H 1.48505 * 109.47366 * 330.00127 * 23 21 19 27 27 N 1.31928 * 119.57753 * 5.03676 * 14 13 11 28 28 C 1.54377 * 110.04501 * 238.53309 * 2 1 3 29 29 H 1.09000 * 109.47444 * 300.02765 * 1 2 3 30 30 H 1.08999 * 109.47711 * 60.03338 * 1 2 3 31 31 H 1.09007 * 109.46869 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47570 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47470 * 299.96754 * 3 2 1 34 34 H 1.09001 * 109.47249 * 59.96548 * 3 2 1 35 35 H 1.08997 * 110.03964 * 359.97438 * 4 2 1 36 36 H 1.09009 * 110.03165 * 238.61899 * 4 2 1 37 37 H 1.09006 * 110.48886 * 142.26192 * 5 4 2 38 38 H 1.08997 * 110.48718 * 264.90420 * 5 4 2 39 39 H 0.97002 * 119.99905 * 93.54531 * 8 6 5 40 40 H 0.97007 * 119.99606 * 354.85027 * 13 11 9 41 41 H 1.08003 * 120.25783 * 0.02562 * 15 14 13 42 42 H 1.07998 * 120.66450 * 179.97438 * 16 15 14 43 43 H 1.07997 * 120.43165 * 179.97438 * 17 16 15 44 44 H 0.96995 * 120.00357 * 179.97438 * 22 21 19 45 45 H 1.09002 * 110.46161 * 98.41906 * 28 2 1 46 46 H 1.09000 * 110.61972 * 335.83377 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0571 -0.7536 1.2336 5 6 2.8882 -1.9406 0.7043 6 6 3.3146 -1.5014 -0.7185 7 1 4.1715 -0.8291 -0.6747 8 7 3.6138 -2.6670 -1.5539 9 6 4.8478 -3.2087 -1.5379 10 8 5.7112 -2.7306 -0.8317 11 6 5.1527 -4.3975 -2.3893 12 8 4.2891 -4.8758 -3.0951 13 7 6.3868 -4.9389 -2.3737 14 6 6.6424 -6.1082 -3.0826 15 6 7.8922 -6.7227 -2.9714 16 6 8.1449 -7.8884 -3.6785 17 6 7.1434 -8.4104 -4.4776 18 6 5.9068 -7.7451 -4.5475 19 6 4.8739 -8.2666 -5.3591 20 1 5.0358 -9.1736 -5.9227 21 6 3.6403 -7.6079 -5.4317 22 7 3.4442 -6.5102 -4.7491 23 14 2.2749 -8.2976 -6.5038 24 1 1.4456 -9.2364 -5.7063 25 1 1.4252 -7.1852 -6.9997 26 1 2.8685 -9.0194 -7.6580 27 7 5.6998 -6.6255 -3.8471 28 6 2.0591 -0.7570 -1.2370 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1446 1.4262 0.0005 33 1 1.6970 1.9546 -0.8902 34 1 1.6960 1.9549 0.8897 35 1 1.2230 -1.1190 1.8326 36 1 2.6860 -0.0952 1.8328 37 1 3.7644 -2.1028 1.3321 38 1 2.2784 -2.8429 0.6583 39 1 2.9238 -3.0489 -2.1187 40 1 7.0968 -4.5132 -1.8680 41 1 8.6553 -6.2937 -2.3390 42 1 9.1043 -8.3791 -3.6068 43 1 7.3096 -9.3167 -5.0409 44 1 2.5899 -6.0538 -4.7997 45 1 2.3302 -0.0555 -2.0259 46 1 1.3163 -1.4680 -1.5987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890052308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:13 Heat of formation + Delta-G solvation = -47.081899 kcal Electronic energy + Delta-G solvation = -28290.146248 eV Core-core repulsion = 24372.106942 eV Total energy + Delta-G solvation = -3918.039307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79272 -40.61013 -39.68783 -38.79399 -36.32562 -35.51275 -34.80453 -32.27869 -32.10336 -31.07353 -29.55181 -28.13398 -27.65672 -26.31793 -24.88259 -23.53914 -22.92938 -21.63863 -21.20313 -20.05235 -19.53934 -18.84020 -18.19468 -17.57421 -16.74420 -16.57050 -16.46643 -16.29346 -16.15366 -15.60384 -15.24457 -15.01686 -14.77820 -14.64192 -14.53162 -14.25856 -14.11425 -13.86934 -13.77017 -12.98433 -12.92818 -12.87779 -12.74456 -12.59966 -12.56677 -12.38562 -12.32432 -12.25517 -11.79414 -11.75715 -11.60240 -11.48477 -11.44255 -11.35902 -10.91876 -10.60255 -10.23321 -9.93806 -9.20012 -8.92355 -8.08662 -6.42748 0.37401 1.02879 1.27190 1.40188 1.42990 1.53865 1.56660 2.27850 2.37724 2.66887 2.98170 3.44690 3.51759 3.63138 3.83559 4.01326 4.28065 4.28663 4.30598 4.32705 4.45170 4.53029 4.55079 4.67149 4.81542 4.84298 4.87476 4.91614 4.94078 4.98741 5.00688 5.06904 5.10540 5.14793 5.24025 5.26474 5.34164 5.40620 5.45435 5.56470 5.63277 5.71247 5.89597 6.00406 6.16738 6.29764 6.54817 6.72180 6.85860 7.03744 7.29134 8.24902 8.55611 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013569 B = 0.003152 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.985823 B = 8881.683913 C =10653.635009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.135 4.135 6 C 0.135 3.865 7 H 0.088 0.912 8 N -0.684 5.684 9 C 0.520 3.480 10 O -0.545 6.545 11 C 0.459 3.541 12 O -0.420 6.420 13 N -0.633 5.633 14 C 0.347 3.653 15 C -0.343 4.343 16 C -0.033 4.033 17 C -0.322 4.322 18 C 0.236 3.764 19 C -0.461 4.461 20 H 0.087 0.913 21 C 0.014 3.986 22 N -0.694 5.694 23 Si 0.977 3.023 24 H -0.267 1.267 25 H -0.271 1.271 26 H -0.258 1.258 27 N -0.506 5.506 28 C -0.117 4.117 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.424 0.576 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.108 0.892 44 H 0.274 0.726 45 H 0.079 0.921 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 14.307 9.349 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 C -0.196 4.196 4 C -0.146 4.146 5 C -0.174 4.174 6 C 0.032 3.968 7 H 0.106 0.894 8 N -0.336 5.336 9 C 0.300 3.700 10 O -0.423 6.423 11 C 0.237 3.763 12 O -0.285 6.285 13 N -0.283 5.283 14 C 0.109 3.891 15 C -0.369 4.369 16 C -0.057 4.057 17 C -0.345 4.345 18 C 0.110 3.890 19 C -0.491 4.491 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.314 5.314 23 Si 0.798 3.202 24 H -0.192 1.192 25 H -0.195 1.195 26 H -0.182 1.182 27 N -0.225 5.225 28 C -0.155 4.155 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.262 0.738 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.127 0.873 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.449 14.936 9.344 19.128 hybrid contribution 0.621 -0.900 -0.400 1.164 sum -6.828 14.036 8.943 17.989 Atomic orbital electron populations 1.21903 0.93220 1.01948 1.02398 1.21106 0.96288 0.95537 0.93477 1.21930 1.00784 0.94469 1.02457 1.22232 0.99409 0.95750 0.97197 1.22726 0.99882 0.99356 0.95387 1.22243 0.98831 0.85627 0.90145 0.89386 1.45795 1.11505 1.31291 1.44969 1.20121 0.83754 0.83890 0.82222 1.90683 1.46946 1.62682 1.42037 1.20784 0.84450 0.85970 0.85071 1.91204 1.44549 1.57826 1.34889 1.42993 1.12286 1.24038 1.48980 1.19008 0.91354 0.87033 0.91737 1.20964 0.97707 1.03511 1.14677 1.21045 0.97995 0.93750 0.92917 1.21849 0.96672 1.05264 1.10692 1.18877 0.92118 0.87811 0.90165 1.19919 0.96762 1.09160 1.23299 0.89453 1.26995 1.01685 0.95206 0.97263 1.70454 1.22777 1.11045 1.27076 0.85295 0.77475 0.78636 0.78803 1.19169 1.19549 1.18227 1.68601 1.29449 1.13663 1.10831 1.22786 0.95207 0.99187 0.98360 0.91660 0.92206 0.92746 0.92953 0.92117 0.91608 0.90471 0.90799 0.92300 0.91628 0.74681 0.73798 0.85304 0.84295 0.87341 0.91520 0.90221 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.16 71.98 0.59 -1.03 16 2 C -0.06 -0.87 0.94 -51.42 -0.05 -0.92 16 3 C -0.14 -1.68 8.15 71.98 0.59 -1.09 16 4 C -0.11 -1.61 6.11 31.31 0.19 -1.42 16 5 C -0.13 -2.76 6.51 31.67 0.21 -2.55 16 6 C 0.14 2.97 3.18 46.28 0.15 3.12 16 7 H 0.09 2.11 7.70 -2.39 -0.02 2.09 16 8 N -0.68 -18.98 5.20 -437.86 -2.28 -21.26 16 9 C 0.52 17.96 7.88 87.24 0.69 18.65 16 10 O -0.55 -19.70 16.21 -3.26 -0.05 -19.75 16 11 C 0.46 19.40 7.84 87.24 0.68 20.09 16 12 O -0.42 -20.63 12.24 -3.27 -0.04 -20.67 16 13 N -0.63 -26.66 5.37 -309.71 -1.66 -28.32 16 14 C 0.35 17.14 7.42 133.31 0.99 18.13 16 15 C -0.34 -15.04 9.96 22.73 0.23 -14.82 16 16 C -0.03 -1.44 10.15 22.40 0.23 -1.21 16 17 C -0.32 -16.05 9.83 22.87 0.22 -15.83 16 18 C 0.24 13.40 6.55 40.20 0.26 13.66 16 19 C -0.46 -25.54 9.14 23.47 0.21 -25.33 16 20 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 21 C 0.01 0.73 5.50 85.29 0.47 1.20 16 22 N -0.69 -38.00 8.99 21.84 0.20 -37.80 16 23 Si 0.98 39.06 29.56 68.60 2.03 41.09 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 27 N -0.51 -28.72 5.73 -186.43 -1.07 -29.79 16 28 C -0.12 -1.96 5.51 31.71 0.17 -1.78 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 1.03 7.67 -2.39 -0.02 1.01 16 36 H 0.07 1.02 7.67 -2.38 -0.02 1.01 16 37 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.42 11.32 8.01 -92.71 -0.74 10.58 16 40 H 0.42 15.04 8.18 -92.70 -0.76 14.29 16 41 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 42 H 0.14 4.83 8.06 -2.91 -0.02 4.80 16 43 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 44 H 0.27 13.83 8.29 -92.71 -0.77 13.06 16 45 H 0.08 1.26 7.84 -2.39 -0.02 1.24 16 46 H 0.08 1.30 7.74 -2.39 -0.02 1.29 16 Total: -1.00 -68.54 377.71 2.46 -66.08 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: -0.49 Total: 41.55 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.83 Total: 8.88 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -4.81 Total: -117.17 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.09 Total: -40.42 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -68.54 2.46 -66.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890052308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.997 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds