Wall clock time and date at job start Tue Mar 31 2020 16:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 110.01535 * 2 1 4 4 C 1.53874 * 110.03015 * 121.38800 * 2 1 3 5 5 C 1.54266 * 106.59508 * 119.28576 * 4 2 1 6 6 C 1.54885 * 104.19914 * 336.39187 * 5 4 2 7 7 H 1.08999 * 110.75422 * 279.44291 * 6 5 4 8 8 N 1.46502 * 110.75756 * 156.25648 * 6 5 4 9 9 C 1.34773 * 120.00317 * 86.45599 * 8 6 5 10 10 O 1.21361 * 119.99749 * 359.97438 * 9 8 6 11 11 C 1.49365 * 120.00424 * 180.02562 * 9 8 6 12 12 O 1.21361 * 119.99786 * 359.97438 * 11 9 8 13 13 N 1.34767 * 120.00046 * 179.97438 * 11 9 8 14 14 C 1.39115 * 120.00234 * 185.14709 * 13 11 9 15 15 C 1.39703 * 119.58356 * 174.66855 * 14 13 11 16 16 C 1.38655 * 119.49634 * 180.02562 * 15 14 13 17 17 C 1.38342 * 118.67153 * 0.02562 * 16 15 14 18 18 C 1.40596 * 119.13548 * 0.02562 * 17 16 15 19 19 C 1.41338 * 119.78834 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99828 * 359.97438 * 19 18 17 21 21 C 1.40029 * 120.00041 * 179.97438 * 19 18 17 22 22 N 1.30736 * 120.00331 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99769 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47143 * 89.99912 * 23 21 19 25 25 H 1.48508 * 109.46951 * 209.99921 * 23 21 19 26 26 H 1.48502 * 109.47052 * 329.99729 * 23 21 19 27 27 N 1.31942 * 119.57515 * 354.69454 * 14 13 11 28 28 C 1.54264 * 110.03465 * 238.55904 * 2 1 3 29 29 H 1.08998 * 109.47451 * 300.06300 * 1 2 3 30 30 H 1.09002 * 109.47148 * 60.06605 * 1 2 3 31 31 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47666 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47352 * 299.93645 * 3 2 1 34 34 H 1.09003 * 109.47490 * 59.93169 * 3 2 1 35 35 H 1.08998 * 110.03398 * 0.02562 * 4 2 1 36 36 H 1.09005 * 110.07155 * 238.59027 * 4 2 1 37 37 H 1.09000 * 110.49126 * 217.70870 * 5 4 2 38 38 H 1.09008 * 110.59581 * 95.12394 * 5 4 2 39 39 H 0.96998 * 119.99871 * 266.44858 * 8 6 5 40 40 H 0.97000 * 120.00722 * 5.15368 * 13 11 9 41 41 H 1.07996 * 120.25241 * 0.02562 * 15 14 13 42 42 H 1.07999 * 120.66592 * 180.02562 * 16 15 14 43 43 H 1.07998 * 120.43349 * 180.02562 * 17 16 15 44 44 H 0.97003 * 120.00515 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.49014 * 145.64662 * 28 2 1 46 46 H 1.09001 * 110.48661 * 23.00149 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7529 1.2341 5 6 2.8874 -1.9403 0.7044 6 6 2.3282 -2.1904 -0.7181 7 1 1.4049 -2.7682 -0.6740 8 7 3.3221 -2.8668 -1.5553 9 6 3.4125 -4.2114 -1.5409 10 8 2.6708 -4.8619 -0.8342 11 6 4.4263 -4.9010 -2.3941 12 8 5.1683 -4.2504 -3.1005 13 7 4.5170 -6.2455 -2.3793 14 6 5.5293 -6.8823 -3.0900 15 6 5.6840 -8.2663 -2.9796 16 6 6.6939 -8.8991 -3.6883 17 6 7.5233 -8.1336 -4.4883 18 6 7.3173 -6.7445 -4.5566 19 6 8.1569 -5.9493 -5.3692 20 1 8.9539 -6.4089 -5.9347 21 6 7.9553 -4.5654 -5.4410 22 7 6.9902 -4.0090 -4.7568 23 14 9.0646 -3.5145 -6.5155 24 1 8.4862 -3.4191 -7.8798 25 1 9.1775 -2.1546 -5.9294 26 1 10.4120 -4.1343 -6.5912 27 7 6.3314 -6.1712 -3.8593 28 6 2.0585 -0.7560 -1.2365 29 1 -0.3634 0.5148 0.8894 30 1 -0.3633 0.5128 -0.8906 31 1 -0.3633 -1.0276 0.0005 32 1 3.1436 1.4273 0.0005 33 1 1.6962 1.9546 -0.8906 34 1 1.6943 1.9553 0.8894 35 1 1.2229 -1.1187 1.8328 36 1 2.6865 -0.0949 1.8332 37 1 2.7402 -2.8191 1.3322 38 1 3.9446 -1.6785 0.6581 39 1 3.9151 -2.3469 -2.1200 40 1 3.8764 -6.7694 -1.8732 41 1 5.0220 -8.8391 -2.3471 42 1 6.8303 -9.9680 -3.6172 43 1 8.3188 -8.5971 -5.0530 44 1 6.8502 -3.0504 -4.8068 45 1 2.9812 -0.3008 -1.5965 46 1 1.3062 -0.7705 -2.0251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890052309.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:18 Heat of formation + Delta-G solvation = -28.770114 kcal Electronic energy + Delta-G solvation = -28291.168846 eV Core-core repulsion = 24373.923598 eV Total energy + Delta-G solvation = -3917.245248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.39392 -39.32932 -38.31038 -37.14841 -34.85379 -34.02075 -33.03877 -31.23532 -30.37935 -29.22781 -28.67819 -27.58608 -25.82742 -25.00909 -23.81051 -21.83197 -21.23164 -20.57904 -19.71555 -18.89528 -18.25672 -17.16313 -16.71053 -16.07154 -15.45053 -15.23996 -15.16633 -14.70880 -14.48090 -14.12506 -14.05180 -13.74114 -13.60586 -13.53126 -13.34971 -13.25989 -12.88034 -12.35150 -12.13035 -12.02418 -11.95347 -11.75906 -11.49413 -11.20421 -11.13096 -11.00167 -10.92524 -10.81857 -10.77715 -10.69071 -10.64343 -10.51989 -9.97954 -9.79449 -9.09397 -9.07783 -8.96779 -8.03340 -7.32919 -7.05656 -6.21979 -4.45267 1.93424 2.79653 2.83213 3.08954 3.13452 3.16043 3.23630 3.96583 4.01479 4.05195 4.27521 4.35393 4.53475 4.86778 4.94884 5.00983 5.05504 5.12790 5.18609 5.23593 5.33352 5.38861 5.51865 5.63776 5.65634 5.72332 5.78367 5.90169 5.96968 5.97098 6.04017 6.06676 6.09744 6.18583 6.42206 6.47586 6.58256 6.75621 6.79680 7.15590 7.31202 7.50964 7.53433 7.76368 7.91304 8.05779 8.19206 8.37223 8.63371 8.93940 9.01947 10.14671 10.41348 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003154 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.288519 B = 8876.055461 C =10649.285844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.113 4.113 5 C -0.137 4.137 6 C 0.141 3.859 7 H 0.095 0.905 8 N -0.699 5.699 9 C 0.510 3.490 10 O -0.534 6.534 11 C 0.466 3.534 12 O -0.387 6.387 13 N -0.639 5.639 14 C 0.368 3.632 15 C -0.349 4.349 16 C -0.036 4.036 17 C -0.301 4.301 18 C 0.271 3.729 19 C -0.424 4.424 20 H 0.083 0.917 21 C 0.060 3.940 22 N -0.662 5.662 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.474 5.474 28 C -0.122 4.122 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.413 0.587 40 H 0.411 0.589 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.272 0.728 45 H 0.077 0.923 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 10.041 8.777 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.151 4.151 5 C -0.175 4.175 6 C 0.036 3.964 7 H 0.113 0.887 8 N -0.352 5.352 9 C 0.291 3.709 10 O -0.411 6.411 11 C 0.242 3.758 12 O -0.250 6.250 13 N -0.287 5.287 14 C 0.130 3.870 15 C -0.375 4.375 16 C -0.060 4.060 17 C -0.324 4.324 18 C 0.146 3.854 19 C -0.454 4.454 20 H 0.101 0.899 21 C -0.169 4.169 22 N -0.281 5.281 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.194 5.194 28 C -0.160 4.160 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.250 0.750 40 H 0.247 0.753 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.717 11.271 8.742 17.841 hybrid contribution 0.479 -0.545 -0.310 0.789 sum -10.238 10.727 8.432 17.058 Atomic orbital electron populations 1.21938 0.94159 1.01960 1.01672 1.21101 0.95653 0.95362 0.94671 1.21918 1.01027 0.95020 1.01672 1.22246 0.99515 0.96542 0.96830 1.22763 1.00109 0.98455 0.96197 1.22012 0.91964 0.92647 0.89790 0.88675 1.45764 1.37825 1.06271 1.45360 1.20821 0.84298 0.83127 0.82611 1.90688 1.43477 1.65408 1.41536 1.20150 0.86199 0.84140 0.85300 1.91209 1.36929 1.63370 1.33489 1.42996 1.30459 1.05985 1.49298 1.18554 0.88925 0.87874 0.91635 1.20516 1.08631 0.93089 1.15228 1.20583 0.93662 0.97340 0.94437 1.21649 1.05619 0.95690 1.09422 1.18374 0.88910 0.88690 0.89460 1.19588 1.12238 0.91626 1.21987 0.89851 1.26162 0.95794 0.98913 0.96039 1.70304 1.20786 1.11374 1.25677 0.86486 0.81306 0.79416 0.80569 1.19630 1.20297 1.18737 1.68654 1.06268 1.34721 1.09723 1.22759 1.01947 0.93782 0.97548 0.92614 0.92619 0.92384 0.92409 0.92629 0.92641 0.91452 0.91424 0.91002 0.91062 0.74986 0.75336 0.88731 0.88370 0.88382 0.91684 0.90487 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.14 37.16 0.30 -0.69 16 2 C -0.07 -0.53 0.94 -153.39 -0.14 -0.67 16 3 C -0.14 -0.98 8.16 37.16 0.30 -0.68 16 4 C -0.11 -0.94 6.11 -25.61 -0.16 -1.10 16 5 C -0.14 -1.45 6.51 -25.07 -0.16 -1.61 16 6 C 0.14 1.59 3.18 -65.94 -0.21 1.38 16 7 H 0.10 1.17 7.70 -51.93 -0.40 0.77 16 8 N -0.70 -9.73 5.20 -52.34 -0.27 -10.00 16 9 C 0.51 8.77 7.88 -11.63 -0.09 8.68 16 10 O -0.53 -9.73 16.21 5.49 0.09 -9.64 16 11 C 0.47 9.64 7.84 -11.63 -0.09 9.55 16 12 O -0.39 -9.20 12.24 5.49 0.07 -9.13 16 13 N -0.64 -13.37 5.37 -11.83 -0.06 -13.44 16 14 C 0.37 9.04 7.42 -155.08 -1.15 7.89 16 15 C -0.35 -7.90 9.95 -38.88 -0.39 -8.28 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.30 -7.46 9.83 -38.65 -0.38 -7.84 16 18 C 0.27 7.49 6.55 -85.00 -0.56 6.93 16 19 C -0.42 -11.39 9.14 -37.73 -0.34 -11.74 16 20 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 21 C 0.06 1.52 5.50 -17.35 -0.10 1.42 16 22 N -0.66 -17.57 8.99 55.55 0.50 -17.07 16 23 Si 0.90 18.67 29.56 -169.99 -5.02 13.65 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 N -0.47 -13.11 5.73 -10.28 -0.06 -13.17 16 28 C -0.12 -1.10 5.51 -25.07 -0.14 -1.24 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 36 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.41 5.58 7.99 -40.82 -0.33 5.26 16 40 H 0.41 7.39 8.18 -40.82 -0.33 7.06 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 42 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 44 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 45 H 0.08 0.68 7.72 -51.93 -0.40 0.28 16 46 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -31.00 377.67 -9.64 -40.64 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.86 Total: 11.67 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -3.70 Total: 0.79 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.10 Total: -53.68 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.16 Total: -18.77 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.00 -9.64 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890052309.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.868 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds