Wall clock time and date at job start Tue Mar 31 2020 16:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 110.01535 * 2 1 4 4 C 1.53874 * 110.03015 * 121.38800 * 2 1 3 5 5 C 1.54266 * 106.59508 * 119.28576 * 4 2 1 6 6 C 1.54885 * 104.19914 * 336.39187 * 5 4 2 7 7 H 1.08999 * 110.75422 * 279.44291 * 6 5 4 8 8 N 1.46502 * 110.75756 * 156.25648 * 6 5 4 9 9 C 1.34773 * 120.00317 * 86.45599 * 8 6 5 10 10 O 1.21361 * 119.99749 * 359.97438 * 9 8 6 11 11 C 1.49365 * 120.00424 * 180.02562 * 9 8 6 12 12 O 1.21361 * 119.99786 * 359.97438 * 11 9 8 13 13 N 1.34767 * 120.00046 * 179.97438 * 11 9 8 14 14 C 1.39115 * 120.00234 * 185.14709 * 13 11 9 15 15 C 1.39703 * 119.58356 * 174.66855 * 14 13 11 16 16 C 1.38655 * 119.49634 * 180.02562 * 15 14 13 17 17 C 1.38342 * 118.67153 * 0.02562 * 16 15 14 18 18 C 1.40596 * 119.13548 * 0.02562 * 17 16 15 19 19 C 1.41338 * 119.78834 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99828 * 359.97438 * 19 18 17 21 21 C 1.40029 * 120.00041 * 179.97438 * 19 18 17 22 22 N 1.30736 * 120.00331 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99769 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47143 * 89.99912 * 23 21 19 25 25 H 1.48508 * 109.46951 * 209.99921 * 23 21 19 26 26 H 1.48502 * 109.47052 * 329.99729 * 23 21 19 27 27 N 1.31942 * 119.57515 * 354.69454 * 14 13 11 28 28 C 1.54264 * 110.03465 * 238.55904 * 2 1 3 29 29 H 1.08998 * 109.47451 * 300.06300 * 1 2 3 30 30 H 1.09002 * 109.47148 * 60.06605 * 1 2 3 31 31 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47666 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47352 * 299.93645 * 3 2 1 34 34 H 1.09003 * 109.47490 * 59.93169 * 3 2 1 35 35 H 1.08998 * 110.03398 * 0.02562 * 4 2 1 36 36 H 1.09005 * 110.07155 * 238.59027 * 4 2 1 37 37 H 1.09000 * 110.49126 * 217.70870 * 5 4 2 38 38 H 1.09008 * 110.59581 * 95.12394 * 5 4 2 39 39 H 0.96998 * 119.99871 * 266.44858 * 8 6 5 40 40 H 0.97000 * 120.00722 * 5.15368 * 13 11 9 41 41 H 1.07996 * 120.25241 * 0.02562 * 15 14 13 42 42 H 1.07999 * 120.66592 * 180.02562 * 16 15 14 43 43 H 1.07998 * 120.43349 * 180.02562 * 17 16 15 44 44 H 0.97003 * 120.00515 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.49014 * 145.64662 * 28 2 1 46 46 H 1.09001 * 110.48661 * 23.00149 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7529 1.2341 5 6 2.8874 -1.9403 0.7044 6 6 2.3282 -2.1904 -0.7181 7 1 1.4049 -2.7682 -0.6740 8 7 3.3221 -2.8668 -1.5553 9 6 3.4125 -4.2114 -1.5409 10 8 2.6708 -4.8619 -0.8342 11 6 4.4263 -4.9010 -2.3941 12 8 5.1683 -4.2504 -3.1005 13 7 4.5170 -6.2455 -2.3793 14 6 5.5293 -6.8823 -3.0900 15 6 5.6840 -8.2663 -2.9796 16 6 6.6939 -8.8991 -3.6883 17 6 7.5233 -8.1336 -4.4883 18 6 7.3173 -6.7445 -4.5566 19 6 8.1569 -5.9493 -5.3692 20 1 8.9539 -6.4089 -5.9347 21 6 7.9553 -4.5654 -5.4410 22 7 6.9902 -4.0090 -4.7568 23 14 9.0646 -3.5145 -6.5155 24 1 8.4862 -3.4191 -7.8798 25 1 9.1775 -2.1546 -5.9294 26 1 10.4120 -4.1343 -6.5912 27 7 6.3314 -6.1712 -3.8593 28 6 2.0585 -0.7560 -1.2365 29 1 -0.3634 0.5148 0.8894 30 1 -0.3633 0.5128 -0.8906 31 1 -0.3633 -1.0276 0.0005 32 1 3.1436 1.4273 0.0005 33 1 1.6962 1.9546 -0.8906 34 1 1.6943 1.9553 0.8894 35 1 1.2229 -1.1187 1.8328 36 1 2.6865 -0.0949 1.8332 37 1 2.7402 -2.8191 1.3322 38 1 3.9446 -1.6785 0.6581 39 1 3.9151 -2.3469 -2.1200 40 1 3.8764 -6.7694 -1.8732 41 1 5.0220 -8.8391 -2.3471 42 1 6.8303 -9.9680 -3.6172 43 1 8.3188 -8.5971 -5.0530 44 1 6.8502 -3.0504 -4.8068 45 1 2.9812 -0.3008 -1.5965 46 1 1.3062 -0.7705 -2.0251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890052309.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:17 Heat of formation + Delta-G solvation = -47.066346 kcal Electronic energy + Delta-G solvation = -28291.962230 eV Core-core repulsion = 24373.923598 eV Total energy + Delta-G solvation = -3918.038632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.79309 -40.61244 -39.69039 -38.79388 -36.32586 -35.51310 -34.80493 -32.27868 -32.10375 -31.07344 -29.55226 -28.13256 -27.65686 -26.31760 -24.88419 -23.53908 -22.92919 -21.64025 -21.20371 -20.05295 -19.53774 -18.83980 -18.19467 -17.57458 -16.74404 -16.57025 -16.46601 -16.29335 -16.15407 -15.60422 -15.24511 -15.01438 -14.77785 -14.64170 -14.53112 -14.26181 -14.11416 -13.86938 -13.76997 -12.98304 -12.92899 -12.87840 -12.74352 -12.59953 -12.56771 -12.38619 -12.32408 -12.25430 -11.79558 -11.75736 -11.60031 -11.48809 -11.44212 -11.35834 -10.91890 -10.60218 -10.23300 -9.93826 -9.20047 -8.92396 -8.08635 -6.42758 0.37394 1.02887 1.27166 1.40299 1.42973 1.53874 1.56652 2.27862 2.37721 2.66938 2.98189 3.44615 3.51850 3.63280 3.83490 4.01327 4.28277 4.28496 4.30635 4.32674 4.45106 4.52981 4.55302 4.67136 4.81559 4.84316 4.87507 4.91563 4.94058 4.98714 5.00678 5.06875 5.10576 5.14795 5.24055 5.26458 5.34213 5.40636 5.45467 5.56481 5.63265 5.71227 5.89601 6.00424 6.16741 6.29753 6.54833 6.72185 6.85865 7.03745 7.29135 8.24869 8.55611 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003154 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.288519 B = 8876.055461 C =10649.285844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.108 4.108 5 C -0.135 4.135 6 C 0.135 3.865 7 H 0.088 0.912 8 N -0.684 5.684 9 C 0.520 3.480 10 O -0.545 6.545 11 C 0.459 3.541 12 O -0.420 6.420 13 N -0.633 5.633 14 C 0.346 3.654 15 C -0.343 4.343 16 C -0.033 4.033 17 C -0.322 4.322 18 C 0.236 3.764 19 C -0.461 4.461 20 H 0.087 0.913 21 C 0.014 3.986 22 N -0.694 5.694 23 Si 0.977 3.023 24 H -0.266 1.266 25 H -0.271 1.271 26 H -0.259 1.259 27 N -0.506 5.506 28 C -0.117 4.117 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.424 0.576 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.108 0.892 44 H 0.274 0.726 45 H 0.079 0.921 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 10.848 9.396 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.064 4.064 3 C -0.195 4.195 4 C -0.146 4.146 5 C -0.174 4.174 6 C 0.032 3.968 7 H 0.106 0.894 8 N -0.336 5.336 9 C 0.300 3.700 10 O -0.424 6.424 11 C 0.237 3.763 12 O -0.285 6.285 13 N -0.283 5.283 14 C 0.109 3.891 15 C -0.369 4.369 16 C -0.057 4.057 17 C -0.345 4.345 18 C 0.110 3.890 19 C -0.491 4.491 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.314 5.314 23 Si 0.798 3.202 24 H -0.191 1.191 25 H -0.195 1.195 26 H -0.182 1.182 27 N -0.225 5.225 28 C -0.155 4.155 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.262 0.738 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.127 0.873 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.480 12.077 9.393 19.128 hybrid contribution 0.624 -0.893 -0.417 1.166 sum -10.856 11.184 8.976 17.986 Atomic orbital electron populations 1.21934 0.93406 1.01850 1.02454 1.21092 0.96218 0.95626 0.93493 1.21903 1.00804 0.94365 1.02400 1.22233 0.99481 0.95660 0.97192 1.22727 1.00195 0.99048 0.95398 1.22253 0.90838 0.93619 0.90117 0.89356 1.45806 1.37771 1.05082 1.44911 1.20124 0.83575 0.84062 0.82236 1.90684 1.43784 1.65840 1.42046 1.20783 0.86364 0.84047 0.85082 1.91204 1.38391 1.63970 1.34911 1.42990 1.29978 1.06434 1.48890 1.19012 0.89349 0.89079 0.91703 1.20960 1.08629 0.92601 1.14662 1.21042 0.92491 0.99273 0.92902 1.21848 1.06850 0.95115 1.10656 1.18878 0.89591 0.90284 0.90223 1.19918 1.13116 0.92891 1.23215 0.89455 1.26993 0.97234 0.99672 0.97247 1.70455 1.22279 1.11663 1.26954 0.85296 0.79093 0.77422 0.78405 1.19149 1.19549 1.18241 1.68609 1.07080 1.36073 1.10779 1.22771 1.02332 0.92063 0.98372 0.91611 0.92121 0.92949 0.92757 0.92211 0.91656 0.90782 0.90468 0.92309 0.91647 0.74679 0.73801 0.85306 0.84294 0.87340 0.91521 0.90256 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.14 71.98 0.59 -1.09 16 2 C -0.06 -0.87 0.94 -51.46 -0.05 -0.92 16 3 C -0.14 -1.62 8.16 71.98 0.59 -1.04 16 4 C -0.11 -1.61 6.11 31.32 0.19 -1.41 16 5 C -0.13 -2.76 6.51 31.67 0.21 -2.56 16 6 C 0.14 2.98 3.18 46.28 0.15 3.12 16 7 H 0.09 2.12 7.70 -2.39 -0.02 2.10 16 8 N -0.68 -18.99 5.20 -437.85 -2.28 -21.26 16 9 C 0.52 17.96 7.88 87.24 0.69 18.65 16 10 O -0.55 -19.70 16.21 -3.28 -0.05 -19.75 16 11 C 0.46 19.41 7.84 87.24 0.68 20.09 16 12 O -0.42 -20.64 12.24 -3.28 -0.04 -20.68 16 13 N -0.63 -26.66 5.37 -309.71 -1.66 -28.33 16 14 C 0.35 17.14 7.42 133.30 0.99 18.13 16 15 C -0.34 -15.04 9.95 22.72 0.23 -14.81 16 16 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 17 C -0.32 -16.05 9.83 22.87 0.22 -15.82 16 18 C 0.24 13.40 6.55 40.20 0.26 13.66 16 19 C -0.46 -25.54 9.14 23.47 0.21 -25.33 16 20 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 21 C 0.01 0.73 5.50 85.29 0.47 1.20 16 22 N -0.69 -38.00 8.99 21.84 0.20 -37.80 16 23 Si 0.98 39.06 29.56 68.60 2.03 41.09 16 24 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 27 N -0.51 -28.72 5.73 -186.42 -1.07 -29.79 16 28 C -0.12 -1.95 5.51 31.67 0.17 -1.78 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 1.03 7.67 -2.39 -0.02 1.01 16 36 H 0.08 1.03 7.67 -2.38 -0.02 1.01 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.42 11.32 7.99 -92.71 -0.74 10.58 16 40 H 0.42 15.05 8.18 -92.71 -0.76 14.29 16 41 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 42 H 0.14 4.83 8.06 -2.91 -0.02 4.80 16 43 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 44 H 0.27 13.83 8.29 -92.71 -0.77 13.06 16 45 H 0.08 1.31 7.72 -2.39 -0.02 1.29 16 46 H 0.08 1.27 7.84 -2.39 -0.02 1.25 16 Total: -1.00 -68.55 377.67 2.47 -66.08 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: -0.49 Total: 41.56 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.83 Total: 8.87 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -4.81 Total: -117.17 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.09 Total: -40.43 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -68.55 2.47 -66.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890052309.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.016 kcal (2) G-P(sol) polarization free energy of solvation -68.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds