Wall clock time and date at job start Tue Mar 31 2020 16:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38530 * 120.38141 * 2 1 4 4 C 1.39294 * 118.35901 * 180.26435 * 3 2 1 5 5 N 1.39751 * 120.49744 * 179.78750 * 4 3 2 6 6 C 1.34776 * 119.99890 * 324.89103 * 5 4 3 7 7 O 1.21378 * 119.99967 * 354.97746 * 6 5 4 8 8 C 1.49352 * 120.00204 * 175.25626 * 6 5 4 9 9 O 1.21358 * 119.99611 * 354.14591 * 8 6 5 10 10 N 1.34776 * 120.00340 * 174.15118 * 8 6 5 11 11 C 1.46505 * 119.99525 * 354.64319 * 10 8 6 12 12 C 1.50701 * 109.47210 * 84.83392 * 11 10 8 13 13 H 1.07998 * 120.00165 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00276 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99412 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00290 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46930 * 59.99797 * 16 14 12 18 18 H 1.48493 * 109.47202 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47116 * 300.00231 * 16 14 12 20 20 C 1.46497 * 120.00237 * 174.64285 * 10 8 6 21 21 C 1.53001 * 109.47016 * 94.55752 * 20 10 8 22 22 C 1.52998 * 117.49527 * 243.62061 * 21 20 10 23 23 C 1.52997 * 60.00068 * 252.51020 * 22 21 20 24 24 C 1.38948 * 119.00865 * 359.50705 * 4 3 2 25 25 N 1.31783 * 120.65329 * 0.23482 * 24 4 3 26 26 C 1.31890 * 121.80314 * 0.02562 * 25 24 4 27 27 C 1.50701 * 119.53218 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.47069 * 270.25302 * 1 2 3 29 29 H 1.08997 * 109.47062 * 30.25260 * 1 2 3 30 30 H 1.09000 * 109.47402 * 150.24957 * 1 2 3 31 31 H 1.08008 * 120.82176 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00649 * 144.89341 * 5 4 3 33 33 H 1.09000 * 109.46848 * 204.82992 * 11 10 8 34 34 H 1.08994 * 109.47445 * 324.83237 * 11 10 8 35 35 H 0.97000 * 119.99610 * 179.97438 * 15 14 12 36 36 H 1.09007 * 109.46847 * 214.55658 * 20 10 8 37 37 H 1.09000 * 109.46877 * 334.55415 * 20 10 8 38 38 H 1.08994 * 115.54978 * 29.32993 * 21 20 10 39 39 H 1.08996 * 117.50029 * 0.02562 * 22 21 20 40 40 H 1.09007 * 117.49533 * 145.02369 * 22 21 20 41 41 H 1.08999 * 117.50264 * 252.51108 * 23 22 21 42 42 H 1.09006 * 117.49687 * 107.48698 * 23 22 21 43 43 H 1.07998 * 119.67408 * 180.24817 * 24 4 3 44 44 H 1.09001 * 109.47329 * 90.00194 * 27 26 25 45 45 H 1.09006 * 109.46849 * 210.00152 * 27 26 25 46 46 H 1.08995 * 109.47122 * 329.99764 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2076 1.1951 0.0000 4 6 3.5997 1.1459 -0.0057 5 7 4.3509 2.3243 -0.0104 6 6 3.9053 3.4049 -0.6813 7 8 2.8991 3.3281 -1.3558 8 6 4.6530 4.6952 -0.6000 9 8 5.5995 4.8016 0.1520 10 7 4.2765 5.7415 -1.3616 11 6 3.2104 5.5794 -2.3533 12 6 1.8717 5.7639 -1.6864 13 1 1.8200 5.9799 -0.6295 14 6 0.7126 5.6571 -2.4256 15 7 0.7756 5.3946 -3.7128 16 14 -0.9468 5.8851 -1.5988 17 1 -1.0225 7.2452 -1.0075 18 1 -2.0273 5.7222 -2.6043 19 1 -1.1097 4.8699 -0.5274 20 6 4.9333 7.0407 -1.1978 21 6 6.0716 7.1682 -2.2122 22 6 7.4955 7.2859 -1.6650 23 6 6.8095 8.5067 -2.2814 24 6 4.2302 -0.0922 -0.0006 25 7 3.5249 -1.2054 0.0047 26 6 2.2060 -1.1926 0.0050 27 6 1.4505 -2.4966 0.0119 28 1 -0.3633 0.0045 1.0277 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6873 2.1416 0.0004 32 1 5.1931 2.3646 0.4692 33 1 3.3300 6.3241 -3.1403 34 1 3.2659 4.5808 -2.7866 35 1 -0.0398 5.3191 -4.2327 36 1 4.2083 7.8377 -1.3631 37 1 5.3359 7.1194 -0.1880 38 1 5.9340 6.6206 -3.1445 39 1 7.6214 7.2721 -0.5824 40 1 8.2951 6.8155 -2.2374 41 1 7.1577 8.8394 -3.2592 42 1 6.4840 9.2964 -1.6042 43 1 5.3090 -0.1429 -0.0008 44 1 1.2686 -2.8057 1.0412 45 1 0.4981 -2.3673 -0.5025 46 1 2.0383 -3.2597 -0.4983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890152857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:29 Heat of formation + Delta-G solvation = 3.976184 kcal Electronic energy + Delta-G solvation = -28712.116524 eV Core-core repulsion = 24796.291262 eV Total energy + Delta-G solvation = -3915.825262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85641 -39.82022 -38.20618 -36.94934 -35.62317 -34.42434 -33.57692 -32.43113 -31.56550 -28.24074 -27.88458 -27.05777 -26.51280 -23.85837 -22.86075 -22.69088 -22.15122 -21.17407 -20.29520 -19.36663 -17.57464 -16.85997 -16.57070 -16.42300 -16.26555 -15.75910 -15.13616 -14.92927 -14.74661 -14.47405 -14.26875 -14.03500 -13.47723 -13.30171 -13.14515 -13.07032 -12.82057 -12.73845 -12.37941 -12.30602 -12.06270 -12.04551 -11.63260 -11.45907 -11.40771 -11.33411 -10.99686 -10.86758 -10.58050 -10.45818 -10.29063 -10.05043 -9.76710 -9.65617 -9.52942 -9.16187 -8.71292 -8.35705 -8.05127 -7.89490 -6.06401 -4.08235 1.09451 1.41125 2.11175 2.78771 3.27898 3.32801 3.34822 3.69593 3.88858 3.95865 4.11335 4.40336 4.44782 4.77730 4.91502 4.98476 5.00866 5.03783 5.13719 5.16658 5.23731 5.30396 5.47436 5.55811 5.63187 5.65087 5.68310 5.77726 5.78606 5.91445 5.94296 6.05020 6.05456 6.08631 6.23264 6.28123 6.38665 6.44006 6.50384 6.65516 6.92559 7.26208 7.30930 7.47259 7.81492 8.02600 8.05997 8.14375 8.27719 8.60188 8.90588 9.53801 11.02665 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.004402 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.837207 B = 6359.407376 C = 8737.681026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.113 4.113 3 C -0.076 4.076 4 C 0.110 3.890 5 N -0.659 5.659 6 C 0.485 3.515 7 O -0.425 6.425 8 C 0.509 3.491 9 O -0.556 6.556 10 N -0.556 5.556 11 C 0.232 3.768 12 C -0.512 4.512 13 H 0.053 0.947 14 C 0.070 3.930 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.147 3.853 21 C -0.162 4.162 22 C -0.175 4.175 23 C -0.178 4.178 24 C 0.070 3.930 25 N -0.465 5.465 26 C 0.097 3.903 27 C -0.100 4.100 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.417 0.583 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.263 0.737 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.156 0.844 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 -6.620 6.111 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.115 4.115 3 C -0.104 4.104 4 C 0.013 3.987 5 N -0.309 5.309 6 C 0.267 3.733 7 O -0.292 6.292 8 C 0.291 3.709 9 O -0.437 6.437 10 N -0.285 5.285 11 C 0.113 3.887 12 C -0.551 4.551 13 H 0.071 0.929 14 C -0.132 4.132 15 N -0.529 5.529 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.203 1.203 20 C 0.024 3.976 21 C -0.181 4.181 22 C -0.212 4.212 23 C -0.216 4.216 24 C -0.090 4.090 25 N -0.173 5.173 26 C -0.041 4.041 27 C -0.158 4.158 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.167 0.833 32 H 0.255 0.745 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.173 0.827 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.684 -7.327 5.772 10.923 hybrid contribution -0.958 1.106 0.490 1.543 sum 4.726 -6.221 6.262 10.013 Atomic orbital electron populations 1.20836 0.90185 1.03601 1.02522 1.20595 0.97577 0.92702 1.00643 1.21629 0.92476 0.99591 0.96703 1.18745 0.91781 0.86970 1.01245 1.43185 1.25265 1.09764 1.52668 1.20523 0.86692 0.85054 0.81074 1.91044 1.22079 1.82335 1.33720 1.19694 0.84041 0.85217 0.81926 1.90656 1.28590 1.83866 1.40605 1.48211 1.35961 1.08144 1.36228 1.19882 0.83333 0.99382 0.86095 1.21115 0.90299 1.48499 0.95169 0.92871 1.24785 0.98772 0.94971 0.94718 1.69902 1.28450 1.48534 1.06041 0.86666 0.83611 0.78571 0.79172 1.20371 1.21224 1.20314 1.21038 0.93352 0.85219 0.98031 1.22733 0.93280 1.00615 1.01493 1.22976 0.95589 1.01748 1.00849 1.22913 1.04659 0.91575 1.02409 1.22486 1.00054 0.86055 1.00429 1.67418 1.07696 1.30033 1.12193 1.21011 0.89656 0.94949 0.98528 1.20698 0.99277 0.93118 1.02674 0.90927 0.90753 0.90812 0.83296 0.74531 0.94763 0.92270 0.92779 0.89404 0.90306 0.87596 0.88674 0.89384 0.89005 0.88823 0.82659 0.90795 0.90537 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.62 36.00 0.35 -1.04 16 2 C -0.11 -1.66 5.89 -104.51 -0.62 -2.28 16 3 C -0.08 -1.29 8.45 -39.08 -0.33 -1.62 16 4 C 0.11 1.75 6.26 -83.59 -0.52 1.23 16 5 N -0.66 -10.58 5.33 -10.20 -0.05 -10.63 16 6 C 0.49 9.60 7.44 -11.63 -0.09 9.51 16 7 O -0.43 -9.83 9.99 5.47 0.05 -9.78 16 8 C 0.51 10.25 7.68 -11.63 -0.09 10.16 16 9 O -0.56 -11.05 16.06 5.49 0.09 -10.97 16 10 N -0.56 -11.43 2.47 -175.60 -0.43 -11.87 16 11 C 0.23 5.59 4.77 -5.19 -0.02 5.57 16 12 C -0.51 -13.51 7.72 -34.44 -0.27 -13.77 16 13 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 14 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 15 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.15 2.55 5.68 -4.04 -0.02 2.53 16 21 C -0.16 -2.48 6.01 -90.62 -0.54 -3.02 16 22 C -0.17 -2.32 10.18 -26.73 -0.27 -2.59 16 23 C -0.18 -2.20 10.25 -26.73 -0.27 -2.48 16 24 C 0.07 1.00 11.13 -17.31 -0.19 0.81 16 25 N -0.46 -6.92 10.26 -9.30 -0.10 -7.01 16 26 C 0.10 1.35 6.78 -82.57 -0.56 0.79 16 27 C -0.10 -1.02 9.76 36.01 0.35 -0.67 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.01 8.10 -51.93 -0.42 0.58 16 30 H 0.07 0.73 5.95 -51.93 -0.31 0.43 16 31 H 0.15 2.86 6.65 -52.48 -0.35 2.51 16 32 H 0.42 5.66 8.33 -40.82 -0.34 5.32 16 33 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 34 H 0.06 1.57 5.93 -51.93 -0.31 1.26 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 37 H 0.08 1.34 7.10 -51.93 -0.37 0.97 16 38 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -30.76 384.66 -8.71 -39.47 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.58 Total: 8.55 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -3.20 Total: 4.93 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.15 Total: -54.08 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.14 Total: -20.74 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.76 -8.71 -39.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890152857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.450 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds