Wall clock time and date at job start Tue Mar 31 2020 16:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38530 * 120.38141 * 2 1 4 4 C 1.39294 * 118.35901 * 180.26435 * 3 2 1 5 5 N 1.39751 * 120.49744 * 179.78750 * 4 3 2 6 6 C 1.34776 * 119.99890 * 324.89103 * 5 4 3 7 7 O 1.21378 * 119.99967 * 354.97746 * 6 5 4 8 8 C 1.49352 * 120.00204 * 175.25626 * 6 5 4 9 9 O 1.21358 * 119.99611 * 354.14591 * 8 6 5 10 10 N 1.34776 * 120.00340 * 174.15118 * 8 6 5 11 11 C 1.46505 * 119.99525 * 354.64319 * 10 8 6 12 12 C 1.50701 * 109.47210 * 84.83392 * 11 10 8 13 13 H 1.07998 * 120.00165 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00276 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99412 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00290 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46930 * 59.99797 * 16 14 12 18 18 H 1.48493 * 109.47202 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47116 * 300.00231 * 16 14 12 20 20 C 1.46497 * 120.00237 * 174.64285 * 10 8 6 21 21 C 1.53001 * 109.47016 * 94.55752 * 20 10 8 22 22 C 1.52998 * 117.49527 * 243.62061 * 21 20 10 23 23 C 1.52997 * 60.00068 * 252.51020 * 22 21 20 24 24 C 1.38948 * 119.00865 * 359.50705 * 4 3 2 25 25 N 1.31783 * 120.65329 * 0.23482 * 24 4 3 26 26 C 1.31890 * 121.80314 * 0.02562 * 25 24 4 27 27 C 1.50701 * 119.53218 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.47069 * 270.25302 * 1 2 3 29 29 H 1.08997 * 109.47062 * 30.25260 * 1 2 3 30 30 H 1.09000 * 109.47402 * 150.24957 * 1 2 3 31 31 H 1.08008 * 120.82176 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00649 * 144.89341 * 5 4 3 33 33 H 1.09000 * 109.46848 * 204.82992 * 11 10 8 34 34 H 1.08994 * 109.47445 * 324.83237 * 11 10 8 35 35 H 0.97000 * 119.99610 * 179.97438 * 15 14 12 36 36 H 1.09007 * 109.46847 * 214.55658 * 20 10 8 37 37 H 1.09000 * 109.46877 * 334.55415 * 20 10 8 38 38 H 1.08994 * 115.54978 * 29.32993 * 21 20 10 39 39 H 1.08996 * 117.50029 * 0.02562 * 22 21 20 40 40 H 1.09007 * 117.49533 * 145.02369 * 22 21 20 41 41 H 1.08999 * 117.50264 * 252.51108 * 23 22 21 42 42 H 1.09006 * 117.49687 * 107.48698 * 23 22 21 43 43 H 1.07998 * 119.67408 * 180.24817 * 24 4 3 44 44 H 1.09001 * 109.47329 * 90.00194 * 27 26 25 45 45 H 1.09006 * 109.46849 * 210.00152 * 27 26 25 46 46 H 1.08995 * 109.47122 * 329.99764 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2076 1.1951 0.0000 4 6 3.5997 1.1459 -0.0057 5 7 4.3509 2.3243 -0.0104 6 6 3.9053 3.4049 -0.6813 7 8 2.8991 3.3281 -1.3558 8 6 4.6530 4.6952 -0.6000 9 8 5.5995 4.8016 0.1520 10 7 4.2765 5.7415 -1.3616 11 6 3.2104 5.5794 -2.3533 12 6 1.8717 5.7639 -1.6864 13 1 1.8200 5.9799 -0.6295 14 6 0.7126 5.6571 -2.4256 15 7 0.7756 5.3946 -3.7128 16 14 -0.9468 5.8851 -1.5988 17 1 -1.0225 7.2452 -1.0075 18 1 -2.0273 5.7222 -2.6043 19 1 -1.1097 4.8699 -0.5274 20 6 4.9333 7.0407 -1.1978 21 6 6.0716 7.1682 -2.2122 22 6 7.4955 7.2859 -1.6650 23 6 6.8095 8.5067 -2.2814 24 6 4.2302 -0.0922 -0.0006 25 7 3.5249 -1.2054 0.0047 26 6 2.2060 -1.1926 0.0050 27 6 1.4505 -2.4966 0.0119 28 1 -0.3633 0.0045 1.0277 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6873 2.1416 0.0004 32 1 5.1931 2.3646 0.4692 33 1 3.3300 6.3241 -3.1403 34 1 3.2659 4.5808 -2.7866 35 1 -0.0398 5.3191 -4.2327 36 1 4.2083 7.8377 -1.3631 37 1 5.3359 7.1194 -0.1880 38 1 5.9340 6.6206 -3.1445 39 1 7.6214 7.2721 -0.5824 40 1 8.2951 6.8155 -2.2374 41 1 7.1577 8.8394 -3.2592 42 1 6.4840 9.2964 -1.6042 43 1 5.3090 -0.1429 -0.0008 44 1 1.2686 -2.8057 1.0412 45 1 0.4981 -2.3673 -0.5025 46 1 2.0383 -3.2597 -0.4983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890152857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:28 Heat of formation + Delta-G solvation = -14.185887 kcal Electronic energy + Delta-G solvation = -28712.904091 eV Core-core repulsion = 24796.291262 eV Total energy + Delta-G solvation = -3916.612829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24906 -41.20121 -39.66202 -38.27982 -37.08842 -35.95395 -34.72450 -34.41608 -32.73417 -29.80405 -29.19711 -28.47917 -27.80267 -25.47329 -24.57135 -23.88511 -23.18059 -22.40466 -21.59570 -20.83180 -19.11057 -18.54830 -18.30971 -17.69269 -17.66958 -17.01349 -16.81767 -16.40218 -16.09309 -15.95077 -15.66365 -15.31548 -14.96885 -14.56225 -14.44300 -14.31083 -14.21117 -13.78832 -13.77746 -13.71480 -13.40868 -13.31816 -13.05462 -12.99180 -12.72802 -12.59965 -12.39879 -12.35765 -12.32518 -11.92595 -11.80545 -11.76368 -11.32466 -10.86895 -10.79382 -10.57737 -10.42190 -10.07143 -9.66716 -9.22603 -8.14681 -6.22553 -0.14047 0.18069 0.58497 1.32810 1.38094 1.39247 1.46536 2.17092 2.36936 2.53654 2.72770 2.94639 3.19385 3.32260 3.44446 3.76131 3.81127 3.83096 3.90605 4.00678 4.04313 4.11294 4.34193 4.47077 4.59778 4.62427 4.66007 4.73880 4.74854 4.80834 4.84350 4.85429 4.93360 5.02787 5.07522 5.09378 5.22786 5.27621 5.28756 5.29249 5.38407 5.50426 5.73996 5.76878 6.02779 6.10219 6.28575 6.72806 6.80609 6.91484 7.04404 7.42879 8.93705 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.004402 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.837207 B = 6359.407376 C = 8737.681026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.098 4.098 4 C 0.089 3.911 5 N -0.639 5.639 6 C 0.485 3.515 7 O -0.467 6.467 8 C 0.508 3.492 9 O -0.552 6.552 10 N -0.561 5.561 11 C 0.254 3.746 12 C -0.513 4.513 13 H 0.045 0.955 14 C 0.023 3.977 15 N -0.923 5.923 16 Si 0.948 3.052 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.277 1.277 20 C 0.146 3.854 21 C -0.188 4.188 22 C -0.167 4.167 23 C -0.155 4.155 24 C 0.079 3.921 25 N -0.475 5.475 26 C 0.099 3.901 27 C -0.099 4.099 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.430 0.570 33 H 0.021 0.979 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.186 0.814 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 -7.530 7.259 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.124 4.124 3 C -0.126 4.126 4 C -0.008 4.008 5 N -0.290 5.290 6 C 0.267 3.733 7 O -0.337 6.337 8 C 0.290 3.710 9 O -0.433 6.433 10 N -0.290 5.290 11 C 0.133 3.867 12 C -0.552 4.552 13 H 0.063 0.937 14 C -0.176 4.176 15 N -0.563 5.563 16 Si 0.774 3.226 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.203 1.203 20 C 0.024 3.976 21 C -0.208 4.208 22 C -0.204 4.204 23 C -0.192 4.192 24 C -0.081 4.081 25 N -0.184 5.184 26 C -0.040 4.040 27 C -0.156 4.156 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.269 0.731 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.203 0.797 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.163 -8.242 6.965 12.427 hybrid contribution -1.030 1.303 0.187 1.671 sum 5.133 -6.939 7.152 11.210 Atomic orbital electron populations 1.20894 0.88464 1.03788 1.03755 1.20893 0.98978 0.92211 1.00312 1.21578 0.93286 0.99367 0.98350 1.18884 0.91555 0.87349 1.02977 1.42958 1.25413 1.09045 1.51547 1.20548 0.86163 0.85676 0.80918 1.91033 1.23827 1.83018 1.35831 1.19791 0.84087 0.85357 0.81786 1.90641 1.28372 1.83916 1.40367 1.48148 1.35572 1.09579 1.35732 1.19347 0.83692 0.97339 0.86280 1.21280 0.91469 1.47719 0.94690 0.93690 1.25501 1.02063 0.94858 0.95225 1.70013 1.29184 1.49827 1.07260 0.85770 0.79788 0.78790 0.78280 1.19276 1.20690 1.20300 1.21178 0.93844 0.83517 0.99053 1.22562 0.93906 1.03719 1.00580 1.23033 0.94179 1.02085 1.01070 1.23038 1.02119 0.90653 1.03394 1.22897 1.01404 0.85045 0.98713 1.67560 1.08259 1.29921 1.12675 1.21647 0.89636 0.96178 0.96491 1.20833 0.99522 0.90993 1.04251 0.89085 0.92934 0.88197 0.86374 0.73062 0.96148 0.94760 0.92841 0.89791 0.89734 0.89317 0.88611 0.88311 0.87418 0.87480 0.79743 0.88816 0.88826 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 9.62 71.23 0.68 -1.92 16 2 C -0.12 -3.53 5.89 -19.80 -0.12 -3.65 16 3 C -0.10 -3.44 8.45 22.59 0.19 -3.25 16 4 C 0.09 2.86 6.26 38.30 0.24 3.10 16 5 N -0.64 -20.80 5.33 -304.53 -1.62 -22.42 16 6 C 0.49 19.91 7.44 87.24 0.65 20.56 16 7 O -0.47 -22.80 9.99 -3.34 -0.03 -22.84 16 8 C 0.51 20.88 7.68 87.24 0.67 21.55 16 9 O -0.55 -21.80 16.06 -3.27 -0.05 -21.85 16 10 N -0.56 -23.80 2.47 -827.84 -2.04 -25.84 16 11 C 0.25 12.82 4.77 85.63 0.41 13.23 16 12 C -0.51 -27.97 7.72 25.60 0.20 -27.77 16 13 H 0.04 2.47 7.81 -2.91 -0.02 2.45 16 14 C 0.02 1.27 5.46 84.65 0.46 1.73 16 15 N -0.92 -54.03 13.29 21.45 0.28 -53.74 16 16 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 C 0.15 5.13 5.68 86.38 0.49 5.62 16 21 C -0.19 -5.72 6.01 -10.79 -0.06 -5.78 16 22 C -0.17 -4.15 10.18 30.59 0.31 -3.84 16 23 C -0.15 -3.53 10.25 30.59 0.31 -3.21 16 24 C 0.08 2.17 11.13 84.87 0.94 3.11 16 25 N -0.48 -13.33 10.26 -183.32 -1.88 -15.21 16 26 C 0.10 2.58 6.78 42.55 0.29 2.87 16 27 C -0.10 -1.71 9.76 71.24 0.70 -1.02 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.10 1.75 5.95 -2.39 -0.01 1.74 16 31 H 0.12 4.87 6.65 -2.91 -0.02 4.85 16 32 H 0.43 11.46 8.33 -92.71 -0.77 10.69 16 33 H 0.02 1.08 8.03 -2.39 -0.02 1.06 16 34 H 0.03 1.93 5.93 -2.39 -0.01 1.92 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.08 2.95 8.11 -2.38 -0.02 2.93 16 37 H 0.08 2.84 7.10 -2.39 -0.02 2.82 16 38 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.10 2.38 8.03 -2.39 -0.02 2.36 16 40 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.09 1.30 5.93 -2.38 -0.01 1.29 16 46 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.15 384.66 3.28 -64.87 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.24 Total: 29.70 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 6.37 Total: 21.32 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -5.26 Total: -117.22 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.09 Total: -44.69 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.15 3.28 -64.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890152857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.682 kcal (2) G-P(sol) polarization free energy of solvation -68.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds