Wall clock time and date at job start Tue Mar 31 2020 16:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38526 * 120.38096 * 2 1 4 4 C 1.39299 * 118.35699 * 180.02562 * 3 2 1 5 5 N 1.39758 * 120.49284 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00181 * 27.43133 * 5 4 3 7 7 O 1.21381 * 119.99994 * 5.11776 * 6 5 4 8 8 C 1.49351 * 120.00088 * 185.11691 * 6 5 4 9 9 O 1.21362 * 120.00168 * 7.01053 * 8 6 5 10 10 N 1.34780 * 120.00219 * 187.01904 * 8 6 5 11 11 C 1.46927 * 120.62693 * 356.48172 * 10 8 6 12 12 C 1.53197 * 108.89038 * 126.46591 * 11 10 8 13 13 C 1.53044 * 109.31213 * 54.56198 * 12 11 10 14 14 C 1.53035 * 109.53966 * 298.63804 * 13 12 11 15 15 H 1.09000 * 109.49426 * 301.37868 * 14 13 12 16 16 C 1.50700 * 109.49963 * 181.31876 * 14 13 12 17 17 H 1.08007 * 119.99918 * 359.97438 * 16 14 13 18 18 C 1.37881 * 120.00277 * 179.97438 * 16 14 13 19 19 N 1.31513 * 119.99738 * 179.97438 * 18 16 14 20 20 Si 1.86801 * 119.99836 * 359.97438 * 18 16 14 21 21 H 1.48504 * 109.47083 * 89.99767 * 20 18 16 22 22 H 1.48491 * 109.46982 * 210.00108 * 20 18 16 23 23 H 1.48497 * 109.47200 * 329.99952 * 20 18 16 24 24 C 1.46956 * 120.65287 * 176.30411 * 10 8 6 25 25 C 1.38940 * 119.01076 * 0.27584 * 4 3 2 26 26 N 1.31780 * 120.65417 * 359.44812 * 25 4 3 27 27 C 1.31890 * 121.80338 * 0.54592 * 26 25 4 28 28 C 1.50697 * 119.53753 * 179.72064 * 27 26 25 29 29 H 1.09002 * 109.47003 * 90.00203 * 1 2 3 30 30 H 1.09000 * 109.47335 * 209.99945 * 1 2 3 31 31 H 1.08997 * 109.47128 * 329.99988 * 1 2 3 32 32 H 1.08005 * 120.82164 * 0.04532 * 3 2 1 33 33 H 0.97000 * 119.99420 * 207.44103 * 5 4 3 34 34 H 1.09000 * 109.59099 * 6.60992 * 11 10 8 35 35 H 1.09003 * 109.58515 * 246.32141 * 11 10 8 36 36 H 1.08997 * 109.49439 * 174.51395 * 12 11 10 37 37 H 1.08999 * 109.49629 * 294.61213 * 12 11 10 38 38 H 1.09002 * 109.45853 * 58.65405 * 13 12 11 39 39 H 1.09000 * 109.45844 * 178.62415 * 13 12 11 40 40 H 0.97004 * 119.99664 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.46548 * 113.75414 * 24 10 8 42 42 H 1.08998 * 109.71936 * 353.46433 * 24 10 8 43 43 H 1.07999 * 119.67380 * 179.72617 * 25 4 3 44 44 H 1.09001 * 109.47413 * 270.02133 * 28 27 26 45 45 H 1.09005 * 109.46975 * 30.02082 * 28 27 26 46 46 H 1.08999 * 109.47238 * 150.02253 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2076 1.1950 0.0000 4 6 3.5997 1.1458 -0.0005 5 7 4.3510 2.3243 0.0000 6 6 3.8399 3.4491 0.5386 7 8 2.7671 3.4173 1.1055 8 6 4.5936 4.7345 0.4380 9 8 5.6012 4.7961 -0.2356 10 7 4.1548 5.8263 1.0954 11 6 2.8961 5.7887 1.8523 12 6 3.1644 6.2611 3.2847 13 6 3.8341 7.6367 3.2469 14 6 5.1733 7.5340 2.5133 15 1 5.8119 6.8114 3.0214 16 6 5.8469 8.8820 2.5048 17 1 5.3679 9.7280 2.9752 18 6 7.0748 9.0354 1.8966 19 7 7.6623 10.2119 1.8888 20 14 7.9036 7.5719 1.0836 21 1 7.4862 7.4942 -0.3395 22 1 9.3778 7.7332 1.1591 23 1 7.5056 6.3250 1.7850 24 6 4.9278 7.0759 1.0722 25 6 4.2302 -0.0923 -0.0069 26 7 3.5249 -1.2054 -0.0015 27 6 2.2061 -1.1927 -0.0005 28 6 1.4505 -2.4966 -0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6873 2.1415 0.0007 33 1 5.2402 2.3327 -0.3875 34 1 2.5105 4.7693 1.8700 35 1 2.1665 6.4472 1.3810 36 1 2.2217 6.3302 3.8275 37 1 3.8217 5.5501 3.7852 38 1 3.1871 8.3413 2.7244 39 1 4.0040 7.9860 4.2653 40 1 8.5263 10.3197 1.4612 41 1 4.3657 7.8408 0.5365 42 1 5.8829 6.9083 0.5743 43 1 5.3090 -0.1429 -0.0119 44 1 1.2679 -2.8107 -1.0282 45 1 2.0387 -3.2573 0.5129 46 1 0.4985 -2.3649 0.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890367602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:11 Heat of formation + Delta-G solvation = -11.820090 kcal Electronic energy + Delta-G solvation = -28602.173734 eV Core-core repulsion = 24685.663494 eV Total energy + Delta-G solvation = -3916.510240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55964 -40.40153 -38.79513 -37.32872 -35.88124 -34.07396 -33.37018 -32.12125 -31.99945 -30.59021 -28.51392 -27.43515 -26.08123 -25.24067 -23.61228 -23.14249 -22.07851 -21.47577 -20.48941 -19.20330 -18.00241 -17.47790 -16.88459 -16.77269 -16.66842 -16.15732 -15.81440 -15.23688 -15.11506 -14.43871 -14.25933 -14.15707 -13.86572 -13.68986 -13.56894 -13.24327 -13.20922 -13.17027 -12.88207 -12.74154 -12.64625 -12.40317 -12.24760 -11.88430 -11.76981 -11.20756 -11.14093 -10.97726 -10.59264 -10.45493 -10.21697 -9.91708 -9.83398 -9.67135 -9.49107 -9.21541 -8.81119 -8.68883 -8.50701 -8.27969 -6.17165 -4.18832 0.56480 0.94685 1.46304 2.15466 3.11138 3.29484 3.36060 3.43820 3.45258 3.48673 4.04351 4.17520 4.34260 4.40418 4.54425 4.58570 4.66973 5.07320 5.14035 5.14203 5.23261 5.25863 5.31538 5.38356 5.41739 5.48756 5.58386 5.63338 5.75928 5.82682 5.92659 5.96493 6.03649 6.06920 6.25649 6.34892 6.37655 6.48682 6.52147 6.66447 6.70982 6.75894 7.06601 7.33754 7.45761 7.58078 7.63798 7.67456 8.02749 8.42043 8.86531 9.43672 10.94856 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.002932 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.902235 B = 9546.331661 C =10435.480215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C -0.083 4.083 4 C 0.096 3.904 5 N -0.639 5.639 6 C 0.517 3.483 7 O -0.490 6.490 8 C 0.496 3.504 9 O -0.528 6.528 10 N -0.562 5.562 11 C 0.047 3.953 12 C -0.133 4.133 13 C -0.103 4.103 14 C 0.006 3.994 15 H 0.031 0.969 16 C -0.516 4.516 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.893 5.893 20 Si 0.878 3.122 21 H -0.271 1.271 22 H -0.293 1.293 23 H -0.265 1.265 24 C 0.097 3.903 25 C 0.078 3.922 26 N -0.460 5.460 27 C 0.104 3.896 28 C -0.104 4.104 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.427 0.573 34 H 0.148 0.852 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.266 0.734 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.160 0.840 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.365 -22.069 -4.099 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.117 4.117 3 C -0.110 4.110 4 C -0.001 4.001 5 N -0.285 5.285 6 C 0.301 3.699 7 O -0.366 6.366 8 C 0.277 3.723 9 O -0.406 6.406 10 N -0.294 5.294 11 C -0.074 4.074 12 C -0.171 4.171 13 C -0.141 4.141 14 C -0.014 4.014 15 H 0.049 0.951 16 C -0.554 4.554 17 H 0.097 0.903 18 C -0.130 4.130 19 N -0.530 5.530 20 Si 0.707 3.293 21 H -0.198 1.198 22 H -0.220 1.220 23 H -0.190 1.190 24 C -0.023 4.023 25 C -0.082 4.082 26 N -0.169 5.169 27 C -0.035 4.035 28 C -0.161 4.161 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.265 0.735 34 H 0.164 0.836 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.177 0.823 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.973 -22.645 -4.109 26.924 hybrid contribution 0.801 0.443 -0.682 1.141 sum -13.173 -22.202 -4.791 26.256 Atomic orbital electron populations 1.20833 0.89871 1.03534 1.02786 1.20636 0.97722 0.92640 1.00718 1.21667 0.92092 0.99771 0.97513 1.18848 0.91988 0.86747 1.02552 1.43176 1.20548 1.07306 1.57428 1.20828 0.86038 0.85363 0.77649 1.90292 1.22187 1.83972 1.40152 1.19598 0.85608 0.84540 0.82543 1.90781 1.25078 1.84345 1.40358 1.48432 1.23572 1.11135 1.46247 1.23268 0.84468 1.07919 0.91746 1.21949 1.00662 0.98874 0.95660 1.21484 0.97174 0.94571 1.00867 1.19495 0.94047 0.97879 0.89944 0.95077 1.20952 1.03288 0.94004 1.37145 0.90286 1.25062 0.96927 0.95556 0.95489 1.69885 1.16622 1.22668 1.43862 0.87004 0.78246 0.83388 0.80630 1.19777 1.22050 1.19020 1.22905 0.95542 0.81738 1.02116 1.22537 1.00385 0.85809 0.99508 1.67488 1.07745 1.29803 1.11828 1.21131 0.89630 0.95185 0.97508 1.20744 0.99291 0.93016 1.03023 0.90682 0.90614 0.90943 0.82847 0.73459 0.83590 0.91600 0.91467 0.92290 0.92444 0.92159 0.92416 0.90657 0.90187 0.82258 0.90466 0.90581 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.62 36.01 0.35 -0.38 16 2 C -0.11 -1.09 5.89 -104.51 -0.62 -1.71 16 3 C -0.08 -0.92 8.48 -39.08 -0.33 -1.25 16 4 C 0.10 1.08 6.41 -83.59 -0.54 0.55 16 5 N -0.64 -7.56 5.34 -10.20 -0.05 -7.61 16 6 C 0.52 7.40 7.61 -11.63 -0.09 7.31 16 7 O -0.49 -7.01 10.36 5.47 0.06 -6.95 16 8 C 0.50 8.82 7.75 -11.63 -0.09 8.73 16 9 O -0.53 -10.67 15.94 5.49 0.09 -10.59 16 10 N -0.56 -10.41 2.98 -173.28 -0.52 -10.93 16 11 C 0.05 0.72 6.25 -3.71 -0.02 0.70 16 12 C -0.13 -2.07 6.08 -26.61 -0.16 -2.24 16 13 C -0.10 -1.95 5.11 -26.69 -0.14 -2.08 16 14 C 0.01 0.13 1.84 -91.65 -0.17 -0.03 16 15 H 0.03 0.76 7.19 -51.93 -0.37 0.38 16 16 C -0.52 -14.06 9.14 -34.44 -0.31 -14.37 16 17 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 18 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 19 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 20 Si 0.88 22.43 24.33 -169.99 -4.14 18.29 16 21 H -0.27 -6.93 6.92 56.52 0.39 -6.54 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 23 H -0.27 -6.71 6.53 56.52 0.37 -6.34 16 24 C 0.10 2.12 5.10 -3.69 -0.02 2.10 16 25 C 0.08 0.82 11.11 -17.31 -0.19 0.63 16 26 N -0.46 -5.19 10.26 -9.30 -0.10 -5.28 16 27 C 0.10 1.02 6.78 -82.56 -0.56 0.46 16 28 C -0.10 -0.68 9.76 36.00 0.35 -0.33 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.37 5.95 -51.93 -0.31 0.06 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.15 1.76 6.08 -52.48 -0.32 1.45 16 33 H 0.43 4.44 8.31 -40.82 -0.34 4.10 16 34 H 0.15 2.13 3.74 -57.12 -0.21 1.92 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.08 1.93 2.37 -51.93 -0.12 1.81 16 43 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.37 5.93 -51.93 -0.31 0.06 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -32.44 361.41 -7.30 -39.74 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.23 Total: 3.95 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.64 Total: 0.05 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.11 Total: -49.95 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.14 Total: -17.54 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.44 -7.30 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890367602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.925 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds