Wall clock time and date at job start Tue Mar 31 2020 16:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38526 * 120.38096 * 2 1 4 4 C 1.39299 * 118.35699 * 180.02562 * 3 2 1 5 5 N 1.39758 * 120.49284 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00181 * 27.43133 * 5 4 3 7 7 O 1.21381 * 119.99994 * 5.11776 * 6 5 4 8 8 C 1.49351 * 120.00088 * 185.11691 * 6 5 4 9 9 O 1.21362 * 120.00168 * 7.01053 * 8 6 5 10 10 N 1.34780 * 120.00219 * 187.01904 * 8 6 5 11 11 C 1.46927 * 120.62693 * 356.48172 * 10 8 6 12 12 C 1.53197 * 108.89038 * 126.46591 * 11 10 8 13 13 C 1.53044 * 109.31213 * 54.56198 * 12 11 10 14 14 C 1.53035 * 109.53966 * 298.63804 * 13 12 11 15 15 H 1.09000 * 109.49426 * 301.37868 * 14 13 12 16 16 C 1.50700 * 109.49963 * 181.31876 * 14 13 12 17 17 H 1.08007 * 119.99918 * 359.97438 * 16 14 13 18 18 C 1.37881 * 120.00277 * 179.97438 * 16 14 13 19 19 N 1.31513 * 119.99738 * 179.97438 * 18 16 14 20 20 Si 1.86801 * 119.99836 * 359.97438 * 18 16 14 21 21 H 1.48504 * 109.47083 * 89.99767 * 20 18 16 22 22 H 1.48491 * 109.46982 * 210.00108 * 20 18 16 23 23 H 1.48497 * 109.47200 * 329.99952 * 20 18 16 24 24 C 1.46956 * 120.65287 * 176.30411 * 10 8 6 25 25 C 1.38940 * 119.01076 * 0.27584 * 4 3 2 26 26 N 1.31780 * 120.65417 * 359.44812 * 25 4 3 27 27 C 1.31890 * 121.80338 * 0.54592 * 26 25 4 28 28 C 1.50697 * 119.53753 * 179.72064 * 27 26 25 29 29 H 1.09002 * 109.47003 * 90.00203 * 1 2 3 30 30 H 1.09000 * 109.47335 * 209.99945 * 1 2 3 31 31 H 1.08997 * 109.47128 * 329.99988 * 1 2 3 32 32 H 1.08005 * 120.82164 * 0.04532 * 3 2 1 33 33 H 0.97000 * 119.99420 * 207.44103 * 5 4 3 34 34 H 1.09000 * 109.59099 * 6.60992 * 11 10 8 35 35 H 1.09003 * 109.58515 * 246.32141 * 11 10 8 36 36 H 1.08997 * 109.49439 * 174.51395 * 12 11 10 37 37 H 1.08999 * 109.49629 * 294.61213 * 12 11 10 38 38 H 1.09002 * 109.45853 * 58.65405 * 13 12 11 39 39 H 1.09000 * 109.45844 * 178.62415 * 13 12 11 40 40 H 0.97004 * 119.99664 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.46548 * 113.75414 * 24 10 8 42 42 H 1.08998 * 109.71936 * 353.46433 * 24 10 8 43 43 H 1.07999 * 119.67380 * 179.72617 * 25 4 3 44 44 H 1.09001 * 109.47413 * 270.02133 * 28 27 26 45 45 H 1.09005 * 109.46975 * 30.02082 * 28 27 26 46 46 H 1.08999 * 109.47238 * 150.02253 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2076 1.1950 0.0000 4 6 3.5997 1.1458 -0.0005 5 7 4.3510 2.3243 0.0000 6 6 3.8399 3.4491 0.5386 7 8 2.7671 3.4173 1.1055 8 6 4.5936 4.7345 0.4380 9 8 5.6012 4.7961 -0.2356 10 7 4.1548 5.8263 1.0954 11 6 2.8961 5.7887 1.8523 12 6 3.1644 6.2611 3.2847 13 6 3.8341 7.6367 3.2469 14 6 5.1733 7.5340 2.5133 15 1 5.8119 6.8114 3.0214 16 6 5.8469 8.8820 2.5048 17 1 5.3679 9.7280 2.9752 18 6 7.0748 9.0354 1.8966 19 7 7.6623 10.2119 1.8888 20 14 7.9036 7.5719 1.0836 21 1 7.4862 7.4942 -0.3395 22 1 9.3778 7.7332 1.1591 23 1 7.5056 6.3250 1.7850 24 6 4.9278 7.0759 1.0722 25 6 4.2302 -0.0923 -0.0069 26 7 3.5249 -1.2054 -0.0015 27 6 2.2061 -1.1927 -0.0005 28 6 1.4505 -2.4966 -0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6873 2.1415 0.0007 33 1 5.2402 2.3327 -0.3875 34 1 2.5105 4.7693 1.8700 35 1 2.1665 6.4472 1.3810 36 1 2.2217 6.3302 3.8275 37 1 3.8217 5.5501 3.7852 38 1 3.1871 8.3413 2.7244 39 1 4.0040 7.9860 4.2653 40 1 8.5263 10.3197 1.4612 41 1 4.3657 7.8408 0.5365 42 1 5.8829 6.9083 0.5743 43 1 5.3090 -0.1429 -0.0119 44 1 1.2679 -2.8107 -1.0282 45 1 2.0387 -3.2573 0.5129 46 1 0.4985 -2.3649 0.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890367602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:10 Heat of formation + Delta-G solvation = -34.242199 kcal Electronic energy + Delta-G solvation = -28603.146030 eV Core-core repulsion = 24685.663494 eV Total energy + Delta-G solvation = -3917.482536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.62792 -41.41279 -40.02214 -38.80274 -36.90066 -35.26280 -34.74477 -33.69448 -32.85959 -32.29838 -29.23074 -28.22970 -27.45634 -26.93762 -24.78718 -23.97211 -23.63465 -22.44740 -21.67842 -20.73310 -19.26550 -18.84111 -18.51811 -17.92811 -17.66431 -17.29841 -16.95635 -16.40226 -16.27376 -15.87400 -15.77715 -15.39520 -15.19072 -14.97084 -14.69059 -14.43300 -14.34259 -14.12847 -13.80270 -13.76594 -13.70267 -13.41227 -13.38452 -13.08622 -12.97656 -12.54513 -12.37599 -12.35709 -12.15203 -12.01807 -11.81701 -11.64315 -11.38092 -11.11492 -10.83244 -10.70465 -10.44789 -10.02701 -9.82684 -9.30546 -8.40061 -6.43297 -0.36404 0.15785 0.39192 0.96881 1.23278 1.29855 1.36736 1.85955 2.18792 2.25027 2.68494 2.94064 2.97213 3.39730 3.70266 3.77282 3.87421 3.91543 3.98725 4.09904 4.14550 4.35569 4.36891 4.46667 4.53874 4.61144 4.62808 4.71354 4.72747 4.79709 4.87794 4.90902 5.01065 5.02824 5.06946 5.14025 5.17712 5.25070 5.28951 5.37203 5.46659 5.55590 5.60322 5.71078 5.77129 6.13536 6.22699 6.44804 6.63633 6.67881 6.91170 7.22115 8.75860 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.002932 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.902235 B = 9546.331661 C =10435.480215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.116 4.116 3 C -0.095 4.095 4 C 0.079 3.921 5 N -0.624 5.624 6 C 0.527 3.473 7 O -0.489 6.489 8 C 0.493 3.507 9 O -0.557 6.557 10 N -0.569 5.569 11 C 0.046 3.954 12 C -0.125 4.125 13 C -0.100 4.100 14 C 0.005 3.995 15 H 0.018 0.982 16 C -0.513 4.513 17 H 0.050 0.950 18 C 0.026 3.974 19 N -0.936 5.936 20 Si 0.935 3.065 21 H -0.273 1.273 22 H -0.292 1.292 23 H -0.264 1.264 24 C 0.104 3.896 25 C 0.076 3.924 26 N -0.481 5.481 27 C 0.097 3.903 28 C -0.103 4.103 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.433 0.567 34 H 0.163 0.837 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.268 0.732 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.178 0.822 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.718 -25.105 -4.208 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.118 4.118 3 C -0.122 4.122 4 C -0.018 4.018 5 N -0.270 5.270 6 C 0.310 3.690 7 O -0.366 6.366 8 C 0.275 3.725 9 O -0.436 6.436 10 N -0.300 5.300 11 C -0.073 4.073 12 C -0.162 4.162 13 C -0.138 4.138 14 C -0.014 4.014 15 H 0.036 0.964 16 C -0.551 4.551 17 H 0.068 0.932 18 C -0.173 4.173 19 N -0.576 5.576 20 Si 0.763 3.237 21 H -0.200 1.200 22 H -0.219 1.219 23 H -0.188 1.188 24 C -0.018 4.018 25 C -0.084 4.084 26 N -0.190 5.190 27 C -0.041 4.041 28 C -0.160 4.160 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.167 0.833 33 H 0.272 0.728 34 H 0.178 0.822 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.195 0.805 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.352 -25.725 -4.213 30.772 hybrid contribution 1.441 1.329 -0.639 2.062 sum -14.911 -24.396 -4.852 29.001 Atomic orbital electron populations 1.20919 0.87608 1.04496 1.03874 1.20963 0.99358 0.91882 0.99637 1.21785 0.92159 1.00314 0.97942 1.18934 0.92207 0.86449 1.04169 1.42986 1.20730 1.06798 1.56502 1.19987 0.85766 0.84719 0.78502 1.90269 1.21931 1.83763 1.40624 1.20149 0.85326 0.85469 0.81557 1.90758 1.26460 1.85012 1.41414 1.48415 1.24232 1.10286 1.47051 1.23527 0.83253 1.09258 0.91251 1.21912 1.01901 0.96164 0.96268 1.21424 0.95214 0.97117 1.00018 1.19419 0.95765 0.94881 0.91356 0.96419 1.21258 1.03136 0.95243 1.35500 0.93164 1.25694 0.97808 0.97382 0.96401 1.69991 1.17380 1.24475 1.45755 0.86085 0.77211 0.80769 0.79594 1.19967 1.21898 1.18845 1.22411 0.95158 0.83627 1.00602 1.22818 1.01343 0.85396 0.98826 1.67571 1.08703 1.30004 1.12685 1.21723 0.89469 0.96692 0.96178 1.20860 0.99750 0.91256 1.04116 0.89405 0.88724 0.90929 0.83336 0.72758 0.82160 0.90085 0.87826 0.92695 0.92127 0.92428 0.92276 0.90724 0.92489 0.80535 0.89179 0.90782 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.62 71.24 0.69 -0.40 16 2 C -0.12 -1.92 5.89 -19.79 -0.12 -2.04 16 3 C -0.09 -1.93 8.48 22.59 0.19 -1.73 16 4 C 0.08 1.65 6.41 38.30 0.25 1.90 16 5 N -0.62 -13.87 5.34 -304.52 -1.63 -15.50 16 6 C 0.53 14.22 7.61 87.24 0.66 14.88 16 7 O -0.49 -12.86 10.36 -3.34 -0.03 -12.90 16 8 C 0.49 16.99 7.75 87.24 0.68 17.66 16 9 O -0.56 -22.27 15.94 -3.28 -0.05 -22.32 16 10 N -0.57 -20.33 2.98 -820.49 -2.45 -22.77 16 11 C 0.05 1.31 6.25 86.36 0.54 1.85 16 12 C -0.12 -3.53 6.08 30.67 0.19 -3.34 16 13 C -0.10 -3.66 5.11 30.62 0.16 -3.50 16 14 C 0.01 0.25 1.84 -11.46 -0.02 0.22 16 15 H 0.02 0.86 7.19 -2.39 -0.02 0.84 16 16 C -0.51 -28.64 9.14 25.60 0.23 -28.40 16 17 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 18 C 0.03 1.52 5.45 84.66 0.46 1.98 16 19 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 20 Si 0.93 47.66 24.33 68.60 1.67 49.33 16 21 H -0.27 -13.88 6.92 99.48 0.69 -13.19 16 22 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.26 -13.19 6.53 99.48 0.65 -12.54 16 24 C 0.10 4.51 5.10 86.36 0.44 4.95 16 25 C 0.08 1.48 11.11 84.87 0.94 2.42 16 26 N -0.48 -9.96 10.26 -183.33 -1.88 -11.84 16 27 C 0.10 1.68 6.78 42.55 0.29 1.97 16 28 C -0.10 -1.04 9.76 71.24 0.70 -0.34 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.55 5.95 -2.39 -0.01 0.53 16 31 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 32 H 0.15 3.14 6.08 -2.91 -0.02 3.12 16 33 H 0.43 8.50 8.31 -92.71 -0.77 7.73 16 34 H 0.16 4.18 3.74 -84.54 -0.32 3.87 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.06 2.76 2.37 -2.39 -0.01 2.75 16 43 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.10 0.56 5.93 -2.39 -0.01 0.55 16 Total: -1.00 -71.43 361.41 2.08 -69.36 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -0.12 Total: 16.31 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 6.27 Total: 8.07 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -5.65 Total: -107.84 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.09 Total: -35.22 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.67 Total: 49.33 kcal Total: -71.43 2.08 -69.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890367602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.114 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds