Wall clock time and date at job start Tue Mar 31 2020 17:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00017 * 2 1 4 4 C 1.53001 * 109.47048 * 269.99413 * 3 2 1 5 5 H 1.08994 * 115.55100 * 330.67135 * 4 3 2 6 6 C 1.53001 * 117.49625 * 116.37659 * 4 3 2 7 7 C 1.52997 * 117.49799 * 184.99688 * 4 3 2 8 8 C 1.52999 * 117.50118 * 0.02562 * 7 4 3 9 9 C 1.53003 * 117.49848 * 145.02191 * 7 4 3 10 10 C 1.34783 * 120.00214 * 179.97438 * 2 1 3 11 11 O 1.21353 * 119.99922 * 174.34279 * 10 2 1 12 12 C 1.49361 * 119.99693 * 354.34010 * 10 2 1 13 13 O 1.21359 * 120.00195 * 354.28045 * 12 10 2 14 14 N 1.34781 * 119.99728 * 174.28181 * 12 10 2 15 15 C 1.39119 * 119.99661 * 183.78073 * 14 12 10 16 16 C 1.39707 * 119.57431 * 174.69612 * 15 14 12 17 17 C 1.38647 * 119.49466 * 179.97438 * 16 15 14 18 18 C 1.38351 * 118.67142 * 0.02562 * 17 16 15 19 19 C 1.40600 * 119.13177 * 0.02562 * 18 17 16 20 20 C 1.41340 * 119.78068 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00071 * 0.02562 * 20 19 18 22 22 C 1.40027 * 119.99468 * 180.02562 * 20 19 18 23 23 N 1.30741 * 120.00193 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99997 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47219 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47371 * 120.00034 * 24 22 20 27 27 H 1.48498 * 109.47334 * 240.00125 * 24 22 20 28 28 N 1.31931 * 119.57920 * 354.69742 * 15 14 12 29 29 H 1.08996 * 109.47344 * 265.18365 * 1 2 3 30 30 H 1.09004 * 109.46852 * 25.19372 * 1 2 3 31 31 H 1.09002 * 109.46366 * 145.18871 * 1 2 3 32 32 H 1.09000 * 109.47007 * 29.99449 * 3 2 1 33 33 H 1.09007 * 109.47290 * 149.99528 * 3 2 1 34 34 H 1.09003 * 117.49928 * 214.97773 * 6 4 3 35 35 H 1.09004 * 117.50121 * 0.02562 * 6 4 3 36 36 H 1.09005 * 109.47083 * 59.99758 * 8 7 4 37 37 H 1.08997 * 109.47391 * 180.02562 * 8 7 4 38 38 H 1.09007 * 109.47217 * 299.99772 * 8 7 4 39 39 H 1.09006 * 109.46970 * 59.99879 * 9 7 4 40 40 H 1.09003 * 109.47232 * 179.97438 * 9 7 4 41 41 H 1.08998 * 109.46748 * 300.00367 * 9 7 4 42 42 H 0.97001 * 119.99948 * 3.77493 * 14 12 10 43 43 H 1.08002 * 120.25270 * 359.97438 * 16 15 14 44 44 H 1.08005 * 120.66951 * 179.97438 * 17 16 15 45 45 H 1.07994 * 120.43733 * 180.02562 * 18 17 16 46 46 H 0.97012 * 120.00168 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.5440 0.9052 -2.1714 6 6 1.8016 3.0145 -1.9077 7 6 3.3101 2.9590 -1.6579 8 6 3.8473 3.6702 -0.4143 9 6 4.2299 2.9821 -2.8803 10 6 2.1389 -1.1672 0.0005 11 8 3.3480 -1.1698 -0.1031 12 6 1.3976 -2.4575 0.1287 13 8 0.2019 -2.4523 0.3363 14 7 2.0566 -3.6276 0.0137 15 6 1.3547 -4.8281 0.0545 16 6 2.0293 -6.0294 -0.1764 17 6 1.3283 -7.2249 -0.1350 18 6 -0.0281 -7.1900 0.1354 19 6 -0.6499 -5.9488 0.3580 20 6 -2.0350 -5.8971 0.6348 21 1 -2.6120 -6.8091 0.6752 22 6 -2.6589 -4.6633 0.8567 23 7 -1.9603 -3.5593 0.8082 24 14 -4.4896 -4.5948 1.2218 25 1 -5.0467 -5.9714 1.2198 26 1 -4.7059 -3.9747 2.5536 27 1 -5.1719 -3.7838 0.1816 28 7 0.0605 -4.8174 0.3106 29 1 -0.3634 -0.0863 1.0240 30 1 -0.3633 0.9300 -0.4375 31 1 -0.3632 -0.8438 -0.5867 32 1 1.6083 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 1.4645 3.0674 -2.9429 35 1 1.1919 3.5581 -1.1859 36 1 4.4754 2.9840 0.1538 37 1 4.4359 4.5362 -0.7169 38 1 3.0129 3.9974 0.2061 39 1 3.6323 2.8832 -3.7866 40 1 4.7757 3.9253 -2.9066 41 1 4.9365 2.1545 -2.8189 42 1 3.0202 -3.6326 -0.0974 43 1 3.0889 -6.0270 -0.3857 44 1 1.8308 -8.1646 -0.3110 45 1 -0.6018 -8.1041 0.1750 46 1 -2.3925 -2.7046 0.9623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890391053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:03 Heat of formation + Delta-G solvation = 21.528338 kcal Electronic energy + Delta-G solvation = -28567.133892 eV Core-core repulsion = 24652.069749 eV Total energy + Delta-G solvation = -3915.064144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.41601 -39.09058 -38.30681 -37.16533 -35.55611 -34.07304 -33.03141 -30.39154 -30.06042 -29.20942 -28.16358 -27.32897 -26.46437 -25.60644 -23.64394 -21.86625 -21.38452 -20.60035 -19.14719 -18.87424 -17.90190 -16.88283 -16.68652 -15.95956 -15.77976 -15.38576 -14.71750 -14.65284 -14.48476 -14.27951 -13.93000 -13.66782 -13.58407 -13.40637 -12.94890 -12.88805 -12.73977 -12.61435 -12.34734 -12.22313 -12.08712 -12.00679 -11.88508 -11.63129 -11.31123 -11.21796 -10.99829 -10.81329 -10.67850 -10.52987 -10.01843 -9.96215 -9.81467 -9.77028 -9.09767 -8.78288 -8.62063 -8.03478 -7.31239 -7.05130 -6.22911 -4.45528 1.94296 2.71321 2.81001 3.08122 3.13626 3.17009 3.22426 3.53360 3.91278 3.97505 4.01157 4.46162 4.54012 4.64010 4.85980 4.86254 4.92994 5.12292 5.30572 5.40045 5.41903 5.51023 5.58424 5.61345 5.68737 5.71388 5.75549 5.92542 5.93070 5.96806 6.03628 6.06538 6.13686 6.24183 6.44038 6.54777 6.58636 6.76538 6.79437 7.15943 7.24536 7.46138 7.52852 7.76117 7.86481 8.04575 8.17432 8.37665 8.63524 8.94051 9.02124 10.14155 10.40409 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014674 B = 0.003267 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.683081 B = 8568.198680 C =10097.579178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.589 5.589 3 C 0.147 3.853 4 C -0.156 4.156 5 H 0.106 0.894 6 C -0.172 4.172 7 C -0.123 4.123 8 C -0.117 4.117 9 C -0.115 4.115 10 C 0.506 3.494 11 O -0.534 6.534 12 C 0.465 3.535 13 O -0.381 6.381 14 N -0.639 5.639 15 C 0.369 3.631 16 C -0.349 4.349 17 C -0.036 4.036 18 C -0.301 4.301 19 C 0.271 3.729 20 C -0.423 4.423 21 H 0.083 0.917 22 C 0.060 3.940 23 N -0.662 5.662 24 Si 0.897 3.103 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.275 1.275 28 N -0.474 5.474 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.411 0.589 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 14.238 -2.949 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.323 5.323 3 C 0.025 3.975 4 C -0.175 4.175 5 H 0.124 0.876 6 C -0.209 4.209 7 C -0.124 4.124 8 C -0.174 4.174 9 C -0.172 4.172 10 C 0.289 3.711 11 O -0.411 6.411 12 C 0.242 3.758 13 O -0.244 6.244 14 N -0.288 5.288 15 C 0.131 3.869 16 C -0.375 4.375 17 C -0.060 4.060 18 C -0.324 4.324 19 C 0.146 3.854 20 C -0.454 4.454 21 H 0.101 0.899 22 C -0.169 4.169 23 N -0.281 5.281 24 Si 0.722 3.278 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.200 1.200 28 N -0.193 5.193 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.246 0.754 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.638 15.345 -2.664 16.564 hybrid contribution 0.137 -0.721 -0.125 0.744 sum 5.775 14.625 -2.789 15.969 Atomic orbital electron populations 1.22201 0.77197 1.03292 1.03578 1.47671 1.08324 1.04792 1.71473 1.21058 0.97572 0.84390 0.94490 1.22881 1.04354 0.91807 0.98443 0.87576 1.23349 0.94635 1.00610 1.02275 1.21571 0.92340 1.00652 0.97830 1.21361 1.00928 0.99663 0.95457 1.21351 0.98669 1.01926 0.95254 1.20859 0.87471 0.85752 0.77012 1.90685 1.14154 1.87521 1.48709 1.20110 0.88758 0.84450 0.82474 1.91166 1.11326 1.85032 1.36914 1.43026 1.10920 1.03769 1.71049 1.18548 0.91158 0.82911 0.94289 1.20517 0.98975 0.92244 1.25725 1.20584 0.94069 0.95668 0.95712 1.21652 0.94864 0.98355 1.17517 1.18378 0.93222 0.85612 0.88191 1.19614 0.92005 0.93713 1.40074 0.89853 1.26153 0.99566 0.95944 0.95192 1.70326 1.34932 0.97831 1.25008 0.86438 0.83408 0.79432 0.78551 1.18624 1.20055 1.20031 1.68646 1.01894 1.28753 1.20031 0.91782 0.92229 0.88165 0.90199 0.89472 0.88930 0.88779 0.91925 0.92157 0.92415 0.92568 0.92201 0.92043 0.75389 0.88768 0.88399 0.88409 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 9.24 59.85 0.55 1.67 16 2 N -0.59 -8.67 2.87 -182.11 -0.52 -9.20 16 3 C 0.15 1.75 4.71 -4.04 -0.02 1.73 16 4 C -0.16 -1.73 5.73 -90.62 -0.52 -2.25 16 5 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 6 C -0.17 -1.56 9.47 -26.73 -0.25 -1.82 16 7 C -0.12 -1.14 2.70 -154.51 -0.42 -1.56 16 8 C -0.12 -0.94 8.86 37.16 0.33 -0.61 16 9 C -0.11 -0.99 9.85 37.16 0.37 -0.62 16 10 C 0.51 8.96 7.72 -11.62 -0.09 8.87 16 11 O -0.53 -9.95 16.13 5.49 0.09 -9.86 16 12 C 0.47 9.63 7.66 -11.63 -0.09 9.54 16 13 O -0.38 -8.78 9.14 5.49 0.05 -8.73 16 14 N -0.64 -13.37 5.37 -11.83 -0.06 -13.44 16 15 C 0.37 8.99 7.42 -155.09 -1.15 7.84 16 16 C -0.35 -7.86 9.95 -38.88 -0.39 -8.25 16 17 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 18 C -0.30 -7.42 9.83 -38.65 -0.38 -7.80 16 19 C 0.27 7.41 6.55 -84.99 -0.56 6.86 16 20 C -0.42 -11.25 9.14 -37.73 -0.34 -11.60 16 21 H 0.08 2.09 7.85 -52.49 -0.41 1.67 16 22 C 0.06 1.51 5.50 -17.35 -0.10 1.41 16 23 N -0.66 -17.12 8.99 55.55 0.50 -16.62 16 24 Si 0.90 18.43 29.56 -169.99 -5.02 13.41 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 28 N -0.47 -12.92 5.73 -10.27 -0.06 -12.98 16 29 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 31 H 0.10 1.70 5.93 -51.93 -0.31 1.39 16 32 H 0.08 0.78 7.81 -51.93 -0.41 0.37 16 33 H 0.09 1.11 7.13 -51.92 -0.37 0.74 16 34 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 36 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 37 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 38 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 39 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 40 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.41 7.44 8.17 -40.82 -0.33 7.11 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 45 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 46 H 0.27 6.42 8.29 -40.81 -0.34 6.08 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -30.36 380.84 -9.54 -39.90 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.80 Total: 9.58 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -3.45 Total: 2.20 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.15 Total: -52.24 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.14 Total: -18.59 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.36 -9.54 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890391053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.433 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds