Wall clock time and date at job start Tue Mar 31 2020 17:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00017 * 2 1 4 4 C 1.53001 * 109.47048 * 269.99413 * 3 2 1 5 5 H 1.08994 * 115.55100 * 330.67135 * 4 3 2 6 6 C 1.53001 * 117.49625 * 116.37659 * 4 3 2 7 7 C 1.52997 * 117.49799 * 184.99688 * 4 3 2 8 8 C 1.52999 * 117.50118 * 0.02562 * 7 4 3 9 9 C 1.53003 * 117.49848 * 145.02191 * 7 4 3 10 10 C 1.34783 * 120.00214 * 179.97438 * 2 1 3 11 11 O 1.21353 * 119.99922 * 174.34279 * 10 2 1 12 12 C 1.49361 * 119.99693 * 354.34010 * 10 2 1 13 13 O 1.21359 * 120.00195 * 354.28045 * 12 10 2 14 14 N 1.34781 * 119.99728 * 174.28181 * 12 10 2 15 15 C 1.39119 * 119.99661 * 183.78073 * 14 12 10 16 16 C 1.39707 * 119.57431 * 174.69612 * 15 14 12 17 17 C 1.38647 * 119.49466 * 179.97438 * 16 15 14 18 18 C 1.38351 * 118.67142 * 0.02562 * 17 16 15 19 19 C 1.40600 * 119.13177 * 0.02562 * 18 17 16 20 20 C 1.41340 * 119.78068 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00071 * 0.02562 * 20 19 18 22 22 C 1.40027 * 119.99468 * 180.02562 * 20 19 18 23 23 N 1.30741 * 120.00193 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99997 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47219 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47371 * 120.00034 * 24 22 20 27 27 H 1.48498 * 109.47334 * 240.00125 * 24 22 20 28 28 N 1.31931 * 119.57920 * 354.69742 * 15 14 12 29 29 H 1.08996 * 109.47344 * 265.18365 * 1 2 3 30 30 H 1.09004 * 109.46852 * 25.19372 * 1 2 3 31 31 H 1.09002 * 109.46366 * 145.18871 * 1 2 3 32 32 H 1.09000 * 109.47007 * 29.99449 * 3 2 1 33 33 H 1.09007 * 109.47290 * 149.99528 * 3 2 1 34 34 H 1.09003 * 117.49928 * 214.97773 * 6 4 3 35 35 H 1.09004 * 117.50121 * 0.02562 * 6 4 3 36 36 H 1.09005 * 109.47083 * 59.99758 * 8 7 4 37 37 H 1.08997 * 109.47391 * 180.02562 * 8 7 4 38 38 H 1.09007 * 109.47217 * 299.99772 * 8 7 4 39 39 H 1.09006 * 109.46970 * 59.99879 * 9 7 4 40 40 H 1.09003 * 109.47232 * 179.97438 * 9 7 4 41 41 H 1.08998 * 109.46748 * 300.00367 * 9 7 4 42 42 H 0.97001 * 119.99948 * 3.77493 * 14 12 10 43 43 H 1.08002 * 120.25270 * 359.97438 * 16 15 14 44 44 H 1.08005 * 120.66951 * 179.97438 * 17 16 15 45 45 H 1.07994 * 120.43733 * 180.02562 * 18 17 16 46 46 H 0.97012 * 120.00168 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.5440 0.9052 -2.1714 6 6 1.8016 3.0145 -1.9077 7 6 3.3101 2.9590 -1.6579 8 6 3.8473 3.6702 -0.4143 9 6 4.2299 2.9821 -2.8803 10 6 2.1389 -1.1672 0.0005 11 8 3.3480 -1.1698 -0.1031 12 6 1.3976 -2.4575 0.1287 13 8 0.2019 -2.4523 0.3363 14 7 2.0566 -3.6276 0.0137 15 6 1.3547 -4.8281 0.0545 16 6 2.0293 -6.0294 -0.1764 17 6 1.3283 -7.2249 -0.1350 18 6 -0.0281 -7.1900 0.1354 19 6 -0.6499 -5.9488 0.3580 20 6 -2.0350 -5.8971 0.6348 21 1 -2.6120 -6.8091 0.6752 22 6 -2.6589 -4.6633 0.8567 23 7 -1.9603 -3.5593 0.8082 24 14 -4.4896 -4.5948 1.2218 25 1 -5.0467 -5.9714 1.2198 26 1 -4.7059 -3.9747 2.5536 27 1 -5.1719 -3.7838 0.1816 28 7 0.0605 -4.8174 0.3106 29 1 -0.3634 -0.0863 1.0240 30 1 -0.3633 0.9300 -0.4375 31 1 -0.3632 -0.8438 -0.5867 32 1 1.6083 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 1.4645 3.0674 -2.9429 35 1 1.1919 3.5581 -1.1859 36 1 4.4754 2.9840 0.1538 37 1 4.4359 4.5362 -0.7169 38 1 3.0129 3.9974 0.2061 39 1 3.6323 2.8832 -3.7866 40 1 4.7757 3.9253 -2.9066 41 1 4.9365 2.1545 -2.8189 42 1 3.0202 -3.6326 -0.0974 43 1 3.0889 -6.0270 -0.3857 44 1 1.8308 -8.1646 -0.3110 45 1 -0.6018 -8.1041 0.1750 46 1 -2.3925 -2.7046 0.9623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890391053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:03 Heat of formation + Delta-G solvation = 5.317156 kcal Electronic energy + Delta-G solvation = -28567.836862 eV Core-core repulsion = 24652.069749 eV Total energy + Delta-G solvation = -3915.767113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87136 -40.47434 -39.53812 -38.78619 -36.90674 -35.77395 -34.81540 -32.26216 -31.11256 -30.85251 -28.93746 -28.17517 -27.90104 -27.33906 -25.12271 -23.47912 -22.82194 -21.97488 -20.65246 -19.71568 -19.57489 -18.44990 -18.23473 -17.52029 -17.07067 -16.51192 -16.43062 -16.28482 -15.82821 -15.64385 -15.30740 -14.96038 -14.80147 -14.67712 -14.45730 -14.06703 -13.88237 -13.83315 -13.75774 -13.31761 -13.27862 -13.06159 -12.87850 -12.82557 -12.73725 -12.54644 -12.43981 -12.35281 -12.26125 -12.00572 -11.72970 -11.56688 -10.90394 -10.79875 -10.63687 -10.34305 -9.92865 -9.80627 -9.15331 -8.89963 -8.07319 -6.41133 0.38555 1.03201 1.27575 1.35470 1.44612 1.55138 1.57718 2.29147 2.35651 2.48873 2.78431 2.99363 3.38398 3.66440 3.81737 3.85517 4.02401 4.17643 4.18792 4.33106 4.35082 4.50620 4.58154 4.67242 4.72944 4.78183 4.81948 4.83153 4.92669 4.94478 4.96680 5.03125 5.04857 5.07165 5.09034 5.19185 5.28978 5.30397 5.41821 5.46013 5.64331 5.73528 5.90153 5.94764 6.11747 6.27808 6.50213 6.70374 6.83438 7.05271 7.30903 8.25710 8.57207 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014674 B = 0.003267 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.683081 B = 8568.198680 C =10097.579178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.578 5.578 3 C 0.148 3.852 4 C -0.176 4.176 5 H 0.079 0.921 6 C -0.157 4.157 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.117 4.117 10 C 0.510 3.490 11 O -0.547 6.547 12 C 0.456 3.544 13 O -0.406 6.406 14 N -0.635 5.635 15 C 0.349 3.651 16 C -0.345 4.345 17 C -0.033 4.033 18 C -0.323 4.323 19 C 0.236 3.764 20 C -0.459 4.459 21 H 0.086 0.914 22 C 0.015 3.985 23 N -0.690 5.690 24 Si 0.976 3.024 25 H -0.259 1.259 26 H -0.270 1.270 27 H -0.269 1.269 28 N -0.504 5.504 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.422 0.578 43 H 0.127 0.873 44 H 0.138 0.862 45 H 0.108 0.892 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 15.956 -3.000 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.310 5.310 3 C 0.027 3.973 4 C -0.195 4.195 5 H 0.097 0.903 6 C -0.194 4.194 7 C -0.120 4.120 8 C -0.174 4.174 9 C -0.174 4.174 10 C 0.293 3.707 11 O -0.426 6.426 12 C 0.234 3.766 13 O -0.270 6.270 14 N -0.285 5.285 15 C 0.111 3.889 16 C -0.371 4.371 17 C -0.057 4.057 18 C -0.346 4.346 19 C 0.111 3.889 20 C -0.490 4.490 21 H 0.104 0.896 22 C -0.211 4.211 23 N -0.309 5.309 24 Si 0.797 3.203 25 H -0.183 1.183 26 H -0.195 1.195 27 H -0.194 1.194 28 N -0.224 5.224 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.260 0.740 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.126 0.874 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.815 17.089 -2.726 18.256 hybrid contribution 0.223 -1.241 -0.161 1.271 sum 6.038 15.848 -2.887 17.203 Atomic orbital electron populations 1.22113 0.76654 1.03829 1.03012 1.47752 1.08737 1.04906 1.69589 1.21275 0.97338 0.83269 0.95394 1.22696 1.07423 0.92152 0.97227 0.90267 1.23431 0.94660 0.98432 1.02856 1.21721 0.92800 0.98902 0.98546 1.21394 1.01401 0.99789 0.94835 1.21384 0.98554 1.02342 0.95123 1.20270 0.87080 0.85573 0.77800 1.90676 1.14307 1.87580 1.49996 1.20716 0.88804 0.85401 0.81681 1.91172 1.12480 1.85659 1.37692 1.43032 1.11395 1.03213 1.70863 1.18988 0.90990 0.84698 0.94226 1.20942 1.00552 0.91645 1.23915 1.21029 0.93333 0.97374 0.93993 1.21844 0.96233 0.97936 1.18544 1.18870 0.94148 0.86799 0.89065 1.19921 0.92454 0.94689 1.41910 0.89617 1.26956 1.04236 0.95156 0.94726 1.70459 1.36874 0.98281 1.25326 0.85254 0.77231 0.79403 0.78392 1.18306 1.19515 1.19358 1.68605 1.03300 1.29275 1.21178 0.92201 0.88589 0.91251 0.87255 0.90325 0.88632 0.87056 0.92651 0.90877 0.91320 0.92538 0.90596 0.93142 0.74019 0.85518 0.84426 0.87433 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.38 9.24 127.77 1.18 3.56 16 2 N -0.58 -16.74 2.87 -848.44 -2.44 -19.18 16 3 C 0.15 3.29 4.71 86.38 0.41 3.69 16 4 C -0.18 -3.70 5.73 -10.79 -0.06 -3.76 16 5 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 6 C -0.16 -2.45 9.47 30.59 0.29 -2.16 16 7 C -0.12 -1.97 2.70 -52.18 -0.14 -2.12 16 8 C -0.12 -1.58 8.86 71.98 0.64 -0.94 16 9 C -0.12 -1.85 9.85 71.98 0.71 -1.14 16 10 C 0.51 18.30 7.72 87.24 0.67 18.98 16 11 O -0.55 -20.50 16.13 -3.26 -0.05 -20.55 16 12 C 0.46 19.42 7.66 87.24 0.67 20.09 16 13 O -0.41 -19.42 9.14 -3.27 -0.03 -19.45 16 14 N -0.64 -27.05 5.37 -309.70 -1.66 -28.71 16 15 C 0.35 17.25 7.42 133.30 0.99 18.24 16 16 C -0.35 -15.21 9.95 22.72 0.23 -14.99 16 17 C -0.03 -1.45 10.15 22.39 0.23 -1.23 16 18 C -0.32 -16.08 9.83 22.87 0.22 -15.86 16 19 C 0.24 13.35 6.55 40.20 0.26 13.62 16 20 C -0.46 -25.22 9.14 23.47 0.21 -25.01 16 21 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 22 C 0.02 0.77 5.50 85.29 0.47 1.24 16 23 N -0.69 -36.86 8.99 21.84 0.20 -36.67 16 24 Si 0.98 38.56 29.56 68.60 2.03 40.59 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 26 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 27 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 28 N -0.50 -28.35 5.73 -186.42 -1.07 -29.42 16 29 H 0.06 1.72 8.11 -2.39 -0.02 1.70 16 30 H 0.10 1.94 8.04 -2.38 -0.02 1.92 16 31 H 0.07 2.42 5.93 -2.39 -0.01 2.41 16 32 H 0.11 1.79 7.81 -2.39 -0.02 1.77 16 33 H 0.08 1.91 7.13 -2.38 -0.02 1.89 16 34 H 0.10 1.45 8.05 -2.39 -0.02 1.43 16 35 H 0.11 1.38 7.94 -2.39 -0.02 1.36 16 36 H 0.05 0.84 7.83 -2.38 -0.02 0.82 16 37 H 0.07 0.81 7.92 -2.39 -0.02 0.79 16 38 H 0.07 0.77 7.90 -2.38 -0.02 0.75 16 39 H 0.06 0.87 7.90 -2.38 -0.02 0.85 16 40 H 0.08 0.95 7.92 -2.39 -0.02 0.93 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.42 15.36 8.17 -92.71 -0.76 14.61 16 43 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 44 H 0.14 4.83 8.06 -2.91 -0.02 4.80 16 45 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 46 H 0.27 13.42 8.29 -92.70 -0.77 12.65 16 Total: -1.00 -68.12 380.84 4.19 -63.93 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.24 Total: 37.24 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.98 Total: 12.22 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.97 Total: -113.98 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.08 Total: -40.00 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -68.12 4.19 -63.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890391053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.247 kcal (2) G-P(sol) polarization free energy of solvation -68.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds