Wall clock time and date at job start Tue Mar 31 2020 17:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 119.99950 * 2 1 4 4 C 1.52996 * 109.47479 * 270.00281 * 3 2 1 5 5 H 1.09002 * 115.55113 * 29.27776 * 4 3 2 6 6 C 1.53005 * 117.49789 * 243.60815 * 4 3 2 7 7 C 1.53003 * 60.03247 * 252.49550 * 6 4 3 8 8 C 1.53004 * 117.49446 * 107.50145 * 7 6 4 9 9 C 1.53000 * 117.49967 * 252.52215 * 7 6 4 10 10 C 1.34777 * 119.99920 * 180.02562 * 2 1 3 11 11 O 1.21358 * 120.00132 * 177.06423 * 10 2 1 12 12 C 1.49372 * 119.99932 * 357.07315 * 10 2 1 13 13 O 1.21349 * 119.99999 * 5.63494 * 12 10 2 14 14 N 1.34777 * 119.99722 * 185.63463 * 12 10 2 15 15 C 1.39111 * 120.00111 * 174.49477 * 14 12 10 16 16 C 1.39713 * 119.57706 * 340.71839 * 15 14 12 17 17 C 1.38647 * 119.49286 * 179.78926 * 16 15 14 18 18 C 1.38349 * 118.67147 * 0.47479 * 17 16 15 19 19 C 1.40592 * 119.13643 * 359.74829 * 18 17 16 20 20 C 1.41333 * 119.78563 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00301 * 5.29335 * 20 19 18 22 22 C 1.40031 * 120.00112 * 185.28645 * 20 19 18 23 23 N 1.30740 * 119.99690 * 5.26336 * 22 20 19 24 24 Si 1.86797 * 120.00169 * 185.26499 * 22 20 19 25 25 H 1.48507 * 109.47100 * 94.99979 * 24 22 20 26 26 H 1.48498 * 109.47074 * 214.99745 * 24 22 20 27 27 H 1.48501 * 109.47130 * 334.99915 * 24 22 20 28 28 N 1.31936 * 119.58311 * 160.98744 * 15 14 12 29 29 H 1.09001 * 109.47360 * 95.80558 * 1 2 3 30 30 H 1.09000 * 109.47308 * 215.80405 * 1 2 3 31 31 H 1.08993 * 109.46956 * 335.80297 * 1 2 3 32 32 H 1.09006 * 109.47090 * 149.99969 * 3 2 1 33 33 H 1.08997 * 109.47283 * 30.00475 * 3 2 1 34 34 H 1.09000 * 117.50292 * 0.02562 * 6 4 3 35 35 H 1.09004 * 117.49787 * 144.99475 * 6 4 3 36 36 H 1.09001 * 109.46850 * 111.39121 * 8 7 6 37 37 H 1.08999 * 109.46808 * 231.39090 * 8 7 6 38 38 H 1.09001 * 109.46833 * 351.39230 * 8 7 6 39 39 H 1.08994 * 109.47334 * 8.60600 * 9 7 6 40 40 H 1.08996 * 109.46869 * 128.61102 * 9 7 6 41 41 H 1.09000 * 109.47015 * 248.61214 * 9 7 6 42 42 H 0.97002 * 120.00369 * 354.49796 * 14 12 10 43 43 H 1.08000 * 120.25001 * 359.97438 * 16 15 14 44 44 H 1.08003 * 120.66620 * 180.21972 * 17 16 15 45 45 H 1.08003 * 120.43027 * 179.77276 * 18 17 16 46 46 H 0.96998 * 120.00005 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4424 5 1 1.7099 1.3863 -2.1716 6 6 3.9074 1.7991 -1.9074 7 6 3.1054 3.0781 -1.6583 8 6 3.4534 3.8992 -0.4150 9 6 2.6656 3.8856 -2.8811 10 6 2.1389 -1.1672 -0.0005 11 8 3.3513 -1.1679 -0.0543 12 6 1.3934 -2.4600 0.0650 13 8 0.1810 -2.4644 0.0154 14 7 2.0675 -3.6215 0.1790 15 6 1.3735 -4.8141 0.3552 16 6 0.0535 -4.7829 0.8121 17 6 -0.6380 -5.9723 0.9828 18 6 0.0092 -7.1626 0.7025 19 6 1.3399 -7.1281 0.2503 20 6 2.0140 -8.3358 -0.0406 21 1 1.4823 -9.2749 0.0021 22 6 3.3713 -8.3148 -0.3844 23 7 4.0404 -7.1926 -0.3364 24 14 4.2259 -9.8899 -0.9114 25 1 4.2165 -9.9862 -2.3934 26 1 5.6289 -9.8785 -0.4251 27 1 3.5116 -11.0573 -0.3350 28 7 1.9717 -5.9606 0.0937 29 1 -0.3634 -0.1040 -1.0224 30 1 -0.3634 -0.8334 0.6012 31 1 -0.3633 0.9373 0.4212 32 1 3.1499 1.1383 0.5139 33 1 1.6084 2.0283 0.5139 34 1 4.6830 1.5424 -1.1858 35 1 4.1221 1.5333 -2.9425 36 1 3.9086 4.8421 -0.7182 37 1 2.5454 4.1002 0.1535 38 1 4.1542 3.3402 0.2051 39 1 2.8789 3.3184 -3.7870 40 1 1.5956 4.0839 -2.8199 41 1 3.2092 4.8301 -2.9075 42 1 3.0367 -3.6258 0.1384 43 1 -0.4254 -3.8392 1.0278 44 1 -1.6602 -5.9701 1.3317 45 1 -0.5014 -8.1059 0.8291 46 1 4.9807 -7.1780 -0.5742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890391054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:07 Heat of formation + Delta-G solvation = 11.443925 kcal Electronic energy + Delta-G solvation = -27913.391596 eV Core-core repulsion = 23997.890160 eV Total energy + Delta-G solvation = -3915.501437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82554 -39.34140 -38.42098 -37.55802 -35.80501 -34.24243 -33.28204 -30.49932 -30.21427 -29.39992 -28.22105 -27.37346 -26.82632 -25.60695 -23.97332 -21.79287 -21.60634 -20.73091 -19.60270 -18.97933 -17.78085 -17.56712 -16.87480 -16.12210 -16.02327 -15.53489 -14.95037 -14.83082 -14.71391 -14.53121 -14.22245 -13.95181 -13.71980 -13.51748 -13.07372 -13.00310 -12.93506 -12.69242 -12.59232 -12.34120 -12.29867 -12.13337 -12.06858 -11.65704 -11.38769 -11.33943 -11.20697 -11.04435 -10.71388 -10.60485 -10.11648 -10.02170 -9.93756 -9.87356 -9.26416 -8.92308 -8.72540 -8.12389 -7.76274 -7.22607 -6.47892 -4.55322 1.51126 2.42172 2.71314 2.93001 3.08389 3.11458 3.19526 3.43490 3.54183 3.73499 3.93025 4.40215 4.48285 4.58701 4.65529 4.73430 4.79403 5.07415 5.16889 5.25191 5.27468 5.33447 5.49950 5.61984 5.63569 5.64754 5.68175 5.73729 5.83100 5.83171 5.91136 6.03880 6.07351 6.08149 6.28801 6.35868 6.64054 6.69040 6.73225 7.01169 7.09618 7.33124 7.38350 7.62517 7.77416 7.91235 8.01667 8.20549 8.41722 8.64636 8.88492 9.95885 10.26963 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.002587 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.462650 B =10819.609842 C =12037.466552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.588 5.588 3 C 0.146 3.854 4 C -0.163 4.163 5 H 0.105 0.895 6 C -0.160 4.160 7 C -0.127 4.127 8 C -0.117 4.117 9 C -0.114 4.114 10 C 0.511 3.489 11 O -0.514 6.514 12 C 0.505 3.495 13 O -0.499 6.499 14 N -0.612 5.612 15 C 0.353 3.647 16 C -0.311 4.311 17 C -0.049 4.049 18 C -0.284 4.284 19 C 0.279 3.721 20 C -0.433 4.433 21 H 0.087 0.913 22 C 0.071 3.929 23 N -0.720 5.720 24 Si 0.909 3.091 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.261 1.261 28 N -0.504 5.504 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.419 0.581 43 H 0.130 0.870 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 19.207 -0.810 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.322 5.322 3 C 0.024 3.976 4 C -0.183 4.183 5 H 0.123 0.877 6 C -0.197 4.197 7 C -0.128 4.128 8 C -0.174 4.174 9 C -0.171 4.171 10 C 0.293 3.707 11 O -0.388 6.388 12 C 0.286 3.714 13 O -0.375 6.375 14 N -0.257 5.257 15 C 0.118 3.882 16 C -0.336 4.336 17 C -0.073 4.073 18 C -0.306 4.306 19 C 0.152 3.848 20 C -0.465 4.465 21 H 0.105 0.895 22 C -0.155 4.155 23 N -0.341 5.341 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.185 1.185 28 N -0.222 5.222 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.257 0.743 43 H 0.147 0.853 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.732 19.303 -1.168 19.352 hybrid contribution -0.004 -0.694 -0.175 0.716 sum -0.736 18.608 -1.343 18.671 Atomic orbital electron populations 1.22435 0.77522 1.04101 1.03601 1.47637 1.08208 1.04865 1.71480 1.21139 0.97890 0.83755 0.94816 1.22875 0.97295 0.99894 0.98189 0.87662 1.23292 0.94137 0.99750 1.02476 1.21634 1.04322 0.88989 0.97805 1.21362 1.01242 0.99334 0.95464 1.21345 1.01066 0.99300 0.95405 1.20164 0.87465 0.85089 0.77949 1.90760 1.13352 1.87108 1.47630 1.19861 0.87619 0.84923 0.79003 1.90583 1.13266 1.86071 1.47547 1.42908 1.11812 1.04391 1.66587 1.18416 0.88928 0.85849 0.94983 1.21516 0.95928 0.99140 1.17024 1.20800 0.97530 0.92546 0.96432 1.21752 0.97889 0.96836 1.14168 1.18182 0.88178 0.90098 0.88305 1.19592 0.94240 0.92892 1.39730 0.89498 1.26054 0.97923 0.97424 0.94056 1.70062 1.08567 1.26373 1.29137 0.86297 0.78796 0.82052 0.79577 1.19473 1.20134 1.18493 1.67987 1.36307 0.95599 1.22332 0.92281 0.87228 0.91791 0.89478 0.89714 0.88362 0.88996 0.92095 0.92204 0.92204 0.92497 0.92292 0.92130 0.74318 0.85271 0.88114 0.88033 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 9.58 59.85 0.57 1.30 16 2 N -0.59 -7.52 2.87 -182.12 -0.52 -8.04 16 3 C 0.15 1.52 4.79 -4.05 -0.02 1.50 16 4 C -0.16 -1.65 5.73 -90.58 -0.52 -2.17 16 5 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 6 C -0.16 -1.64 9.46 -26.73 -0.25 -1.89 16 7 C -0.13 -1.06 2.70 -154.46 -0.42 -1.48 16 8 C -0.12 -0.82 8.86 37.16 0.33 -0.49 16 9 C -0.11 -0.83 9.85 37.16 0.37 -0.46 16 10 C 0.51 8.32 7.73 -11.62 -0.09 8.23 16 11 O -0.51 -9.24 16.09 5.49 0.09 -9.15 16 12 C 0.51 9.45 7.61 -11.62 -0.09 9.36 16 13 O -0.50 -9.55 9.96 5.50 0.05 -9.49 16 14 N -0.61 -13.02 5.40 -11.83 -0.06 -13.08 16 15 C 0.35 8.73 7.50 -155.09 -1.16 7.57 16 16 C -0.31 -7.32 8.82 -38.88 -0.34 -7.67 16 17 C -0.05 -1.11 10.15 -39.39 -0.40 -1.51 16 18 C -0.28 -6.97 9.83 -38.65 -0.38 -7.35 16 19 C 0.28 7.61 6.53 -85.00 -0.56 7.05 16 20 C -0.43 -11.46 9.13 -37.73 -0.34 -11.80 16 21 H 0.09 2.14 7.85 -52.48 -0.41 1.73 16 22 C 0.07 1.78 5.48 -17.34 -0.10 1.69 16 23 N -0.72 -18.92 11.51 55.55 0.64 -18.28 16 24 Si 0.91 18.49 29.56 -169.99 -5.03 13.47 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 28 N -0.50 -13.80 7.95 -10.28 -0.08 -13.88 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.11 1.43 5.38 -51.93 -0.28 1.15 16 31 H 0.06 0.52 7.83 -51.93 -0.41 0.11 16 32 H 0.09 0.99 7.20 -51.93 -0.37 0.61 16 33 H 0.08 0.68 7.49 -51.93 -0.39 0.29 16 34 H 0.10 1.07 7.94 -51.93 -0.41 0.65 16 35 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 36 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 37 H 0.06 0.37 7.84 -51.93 -0.41 -0.04 16 38 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 39 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 42 H 0.42 8.75 8.30 -40.82 -0.34 8.41 16 43 H 0.13 2.88 5.36 -52.49 -0.28 2.60 16 44 H 0.10 1.96 8.06 -52.48 -0.42 1.53 16 45 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 46 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -30.10 382.15 -9.16 -39.26 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.61 Total: 11.57 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -3.40 Total: 1.88 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.03 Total: -53.29 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.14 Total: -18.65 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.10 -9.16 -39.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890391054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.703 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds