Wall clock time and date at job start Tue Mar 31 2020 17:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 119.99950 * 2 1 4 4 C 1.52996 * 109.47479 * 270.00281 * 3 2 1 5 5 H 1.09002 * 115.55113 * 29.27776 * 4 3 2 6 6 C 1.53005 * 117.49789 * 243.60815 * 4 3 2 7 7 C 1.53003 * 60.03247 * 252.49550 * 6 4 3 8 8 C 1.53004 * 117.49446 * 107.50145 * 7 6 4 9 9 C 1.53000 * 117.49967 * 252.52215 * 7 6 4 10 10 C 1.34777 * 119.99920 * 180.02562 * 2 1 3 11 11 O 1.21358 * 120.00132 * 177.06423 * 10 2 1 12 12 C 1.49372 * 119.99932 * 357.07315 * 10 2 1 13 13 O 1.21349 * 119.99999 * 5.63494 * 12 10 2 14 14 N 1.34777 * 119.99722 * 185.63463 * 12 10 2 15 15 C 1.39111 * 120.00111 * 174.49477 * 14 12 10 16 16 C 1.39713 * 119.57706 * 340.71839 * 15 14 12 17 17 C 1.38647 * 119.49286 * 179.78926 * 16 15 14 18 18 C 1.38349 * 118.67147 * 0.47479 * 17 16 15 19 19 C 1.40592 * 119.13643 * 359.74829 * 18 17 16 20 20 C 1.41333 * 119.78563 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00301 * 5.29335 * 20 19 18 22 22 C 1.40031 * 120.00112 * 185.28645 * 20 19 18 23 23 N 1.30740 * 119.99690 * 5.26336 * 22 20 19 24 24 Si 1.86797 * 120.00169 * 185.26499 * 22 20 19 25 25 H 1.48507 * 109.47100 * 94.99979 * 24 22 20 26 26 H 1.48498 * 109.47074 * 214.99745 * 24 22 20 27 27 H 1.48501 * 109.47130 * 334.99915 * 24 22 20 28 28 N 1.31936 * 119.58311 * 160.98744 * 15 14 12 29 29 H 1.09001 * 109.47360 * 95.80558 * 1 2 3 30 30 H 1.09000 * 109.47308 * 215.80405 * 1 2 3 31 31 H 1.08993 * 109.46956 * 335.80297 * 1 2 3 32 32 H 1.09006 * 109.47090 * 149.99969 * 3 2 1 33 33 H 1.08997 * 109.47283 * 30.00475 * 3 2 1 34 34 H 1.09000 * 117.50292 * 0.02562 * 6 4 3 35 35 H 1.09004 * 117.49787 * 144.99475 * 6 4 3 36 36 H 1.09001 * 109.46850 * 111.39121 * 8 7 6 37 37 H 1.08999 * 109.46808 * 231.39090 * 8 7 6 38 38 H 1.09001 * 109.46833 * 351.39230 * 8 7 6 39 39 H 1.08994 * 109.47334 * 8.60600 * 9 7 6 40 40 H 1.08996 * 109.46869 * 128.61102 * 9 7 6 41 41 H 1.09000 * 109.47015 * 248.61214 * 9 7 6 42 42 H 0.97002 * 120.00369 * 354.49796 * 14 12 10 43 43 H 1.08000 * 120.25001 * 359.97438 * 16 15 14 44 44 H 1.08003 * 120.66620 * 180.21972 * 17 16 15 45 45 H 1.08003 * 120.43027 * 179.77276 * 18 17 16 46 46 H 0.96998 * 120.00005 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4424 5 1 1.7099 1.3863 -2.1716 6 6 3.9074 1.7991 -1.9074 7 6 3.1054 3.0781 -1.6583 8 6 3.4534 3.8992 -0.4150 9 6 2.6656 3.8856 -2.8811 10 6 2.1389 -1.1672 -0.0005 11 8 3.3513 -1.1679 -0.0543 12 6 1.3934 -2.4600 0.0650 13 8 0.1810 -2.4644 0.0154 14 7 2.0675 -3.6215 0.1790 15 6 1.3735 -4.8141 0.3552 16 6 0.0535 -4.7829 0.8121 17 6 -0.6380 -5.9723 0.9828 18 6 0.0092 -7.1626 0.7025 19 6 1.3399 -7.1281 0.2503 20 6 2.0140 -8.3358 -0.0406 21 1 1.4823 -9.2749 0.0021 22 6 3.3713 -8.3148 -0.3844 23 7 4.0404 -7.1926 -0.3364 24 14 4.2259 -9.8899 -0.9114 25 1 4.2165 -9.9862 -2.3934 26 1 5.6289 -9.8785 -0.4251 27 1 3.5116 -11.0573 -0.3350 28 7 1.9717 -5.9606 0.0937 29 1 -0.3634 -0.1040 -1.0224 30 1 -0.3634 -0.8334 0.6012 31 1 -0.3633 0.9373 0.4212 32 1 3.1499 1.1383 0.5139 33 1 1.6084 2.0283 0.5139 34 1 4.6830 1.5424 -1.1858 35 1 4.1221 1.5333 -2.9425 36 1 3.9086 4.8421 -0.7182 37 1 2.5454 4.1002 0.1535 38 1 4.1542 3.3402 0.2051 39 1 2.8789 3.3184 -3.7870 40 1 1.5956 4.0839 -2.8199 41 1 3.2092 4.8301 -2.9075 42 1 3.0367 -3.6258 0.1384 43 1 -0.4254 -3.8392 1.0278 44 1 -1.6602 -5.9701 1.3317 45 1 -0.5014 -8.1059 0.8291 46 1 4.9807 -7.1780 -0.5742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890391054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:06 Heat of formation + Delta-G solvation = -5.188582 kcal Electronic energy + Delta-G solvation = -27914.112836 eV Core-core repulsion = 23997.890160 eV Total energy + Delta-G solvation = -3916.222676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.24303 -40.66432 -39.62745 -39.07460 -37.05566 -35.86290 -35.08656 -32.39425 -31.32021 -30.89638 -28.92664 -28.12918 -28.05423 -27.36868 -25.36671 -23.58799 -23.01846 -21.97692 -21.03255 -19.69660 -19.43546 -19.12292 -18.27880 -17.67613 -17.39297 -16.81928 -16.50729 -16.38448 -16.00754 -15.74377 -15.45506 -15.18337 -14.95641 -14.71316 -14.42571 -14.17609 -14.08223 -13.85360 -13.84243 -13.64353 -13.26794 -13.06920 -12.96728 -12.86195 -12.78302 -12.65035 -12.57776 -12.45471 -12.17432 -12.01232 -11.83367 -11.66446 -11.06604 -10.76174 -10.64417 -10.34291 -10.04423 -9.82873 -9.68954 -9.09730 -8.35355 -6.53315 0.03850 0.90832 1.11320 1.16149 1.41438 1.53365 1.56252 2.03925 2.22476 2.33224 2.75842 2.84193 3.15797 3.64485 3.78012 3.87563 3.88122 4.17869 4.22823 4.29389 4.32533 4.48776 4.49110 4.53240 4.70254 4.79138 4.81204 4.83049 4.84977 4.87400 4.92038 5.04471 5.06189 5.08156 5.10866 5.18625 5.21590 5.28560 5.34300 5.48025 5.53641 5.57450 5.80190 5.88793 5.98720 6.19270 6.28447 6.59164 6.72501 6.80924 6.96019 8.04256 8.41987 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.002587 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.462650 B =10819.609842 C =12037.466552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.573 5.573 3 C 0.145 3.855 4 C -0.171 4.171 5 H 0.098 0.902 6 C -0.180 4.180 7 C -0.104 4.104 8 C -0.119 4.119 9 C -0.115 4.115 10 C 0.513 3.487 11 O -0.537 6.537 12 C 0.506 3.494 13 O -0.501 6.501 14 N -0.620 5.620 15 C 0.339 3.661 16 C -0.316 4.316 17 C -0.045 4.045 18 C -0.300 4.300 19 C 0.244 3.756 20 C -0.464 4.464 21 H 0.095 0.905 22 C 0.025 3.975 23 N -0.757 5.757 24 Si 0.989 3.011 25 H -0.267 1.267 26 H -0.269 1.269 27 H -0.252 1.252 28 N -0.536 5.536 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.417 0.583 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.118 0.882 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 20.819 -0.691 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.305 5.305 3 C 0.024 3.976 4 C -0.190 4.190 5 H 0.116 0.884 6 C -0.217 4.217 7 C -0.105 4.105 8 C -0.176 4.176 9 C -0.172 4.172 10 C 0.294 3.706 11 O -0.415 6.415 12 C 0.288 3.712 13 O -0.377 6.377 14 N -0.266 5.266 15 C 0.105 3.895 16 C -0.341 4.341 17 C -0.069 4.069 18 C -0.322 4.322 19 C 0.118 3.882 20 C -0.496 4.496 21 H 0.114 0.886 22 C -0.197 4.197 23 N -0.379 5.379 24 Si 0.809 3.191 25 H -0.192 1.192 26 H -0.194 1.194 27 H -0.175 1.175 28 N -0.256 5.256 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.254 0.746 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.136 0.864 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.750 20.979 -1.042 21.078 hybrid contribution 0.191 -1.028 -0.201 1.064 sum -1.558 19.952 -1.244 20.051 Atomic orbital electron populations 1.22522 0.76122 1.05540 1.03630 1.47767 1.09134 1.04477 1.69156 1.21378 0.97889 0.82976 0.95372 1.22828 0.96742 1.01778 0.97680 0.88352 1.23300 0.94234 1.02310 1.01899 1.21746 1.01681 0.88235 0.98791 1.21422 1.01950 0.99441 0.94762 1.21388 1.01831 0.99534 0.94482 1.19718 0.87015 0.85093 0.78735 1.90757 1.14075 1.87232 1.49417 1.20383 0.87724 0.85173 0.77919 1.90569 1.13514 1.86359 1.47244 1.42972 1.11721 1.04336 1.67530 1.18790 0.89767 0.86303 0.94658 1.21800 0.95599 1.00107 1.16578 1.21219 0.99076 0.91583 0.95035 1.21959 0.97327 0.98328 1.14604 1.18710 0.89684 0.90664 0.89164 1.19980 0.95431 0.93175 1.40987 0.88650 1.27002 0.98167 1.01053 0.93478 1.70165 1.09119 1.28754 1.29868 0.85097 0.77581 0.77460 0.78964 1.19164 1.19373 1.17489 1.67973 1.37450 0.96436 1.23728 0.92150 0.89086 0.87729 0.90489 0.86208 0.89461 0.89616 0.90926 0.90724 0.92711 0.93117 0.91361 0.90821 0.74555 0.83990 0.84286 0.86433 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 9.58 127.77 1.22 2.47 16 2 N -0.57 -13.82 2.87 -848.47 -2.44 -16.26 16 3 C 0.14 2.72 4.79 86.38 0.41 3.13 16 4 C -0.17 -3.22 5.73 -10.77 -0.06 -3.28 16 5 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 6 C -0.18 -3.67 9.46 30.60 0.29 -3.38 16 7 C -0.10 -1.54 2.70 -52.15 -0.14 -1.68 16 8 C -0.12 -1.34 8.86 71.98 0.64 -0.70 16 9 C -0.12 -1.41 9.85 71.98 0.71 -0.70 16 10 C 0.51 16.71 7.73 87.24 0.67 17.39 16 11 O -0.54 -19.77 16.09 -3.27 -0.05 -19.82 16 12 C 0.51 19.15 7.61 87.24 0.66 19.82 16 13 O -0.50 -19.04 9.96 -3.25 -0.03 -19.07 16 14 N -0.62 -27.30 5.40 -309.70 -1.67 -28.97 16 15 C 0.34 17.25 7.50 133.30 1.00 18.25 16 16 C -0.32 -14.86 8.82 22.72 0.20 -14.66 16 17 C -0.04 -2.01 10.15 22.39 0.23 -1.79 16 18 C -0.30 -14.81 9.83 22.87 0.22 -14.59 16 19 C 0.24 13.71 6.53 40.20 0.26 13.97 16 20 C -0.46 -25.16 9.13 23.47 0.21 -24.94 16 21 H 0.10 4.78 7.85 -2.91 -0.02 4.75 16 22 C 0.02 1.27 5.48 85.29 0.47 1.74 16 23 N -0.76 -41.04 11.51 21.84 0.25 -40.79 16 24 Si 0.99 38.27 29.56 68.60 2.03 40.29 16 25 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 26 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 28 N -0.54 -30.46 7.95 -186.43 -1.48 -31.95 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 2.22 5.38 -2.42 -0.01 2.21 16 31 H 0.10 1.26 7.83 -2.39 -0.02 1.24 16 32 H 0.08 1.66 7.20 -2.38 -0.02 1.64 16 33 H 0.12 1.44 7.49 -2.39 -0.02 1.42 16 34 H 0.09 1.95 7.94 -2.39 -0.02 1.93 16 35 H 0.09 1.80 8.05 -2.38 -0.02 1.78 16 36 H 0.07 0.68 7.92 -2.39 -0.02 0.66 16 37 H 0.07 0.65 7.84 -2.39 -0.02 0.63 16 38 H 0.05 0.69 7.90 -2.39 -0.02 0.67 16 39 H 0.05 0.69 7.90 -2.39 -0.02 0.67 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.73 7.92 -2.39 -0.02 0.71 16 42 H 0.42 18.38 8.30 -92.71 -0.77 17.61 16 43 H 0.14 6.23 5.36 -3.01 -0.02 6.21 16 44 H 0.14 5.06 8.06 -2.91 -0.02 5.03 16 45 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 46 H 0.28 13.74 8.29 -92.71 -0.77 12.98 16 Total: -1.00 -67.33 382.15 3.85 -63.48 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: 0.24 Total: 42.06 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 7.01 Total: 11.03 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -5.34 Total: -117.97 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.08 Total: -38.89 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.29 kcal Total: -67.33 3.85 -63.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890391054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.292 kcal (2) G-P(sol) polarization free energy of solvation -67.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds