Wall clock time and date at job start Tue Mar 31 2020 17:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 110.43480 * 2 1 4 4 C 1.34780 * 120.00121 * 61.09350 * 3 2 1 5 5 O 1.21586 * 119.99576 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00188 * 179.97438 * 4 3 2 7 7 C 1.46494 * 119.99994 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.47345 * 34.99720 * 7 6 4 9 9 C 1.52998 * 109.47146 * 154.99770 * 7 6 4 10 10 C 1.50696 * 109.47188 * 295.00356 * 9 7 6 11 11 H 1.07995 * 120.00332 * 359.97438 * 10 9 7 12 12 C 1.37880 * 119.99983 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00210 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46845 * 269.99914 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99403 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00010 * 14 12 10 18 18 C 1.50706 * 109.47349 * 274.99762 * 7 6 4 19 19 C 1.38240 * 119.99610 * 319.72948 * 18 7 6 20 20 C 1.38232 * 119.99630 * 179.74369 * 19 18 7 21 21 C 1.38240 * 119.99977 * 0.52379 * 20 19 18 22 22 C 1.38238 * 120.00062 * 359.75499 * 21 20 19 23 23 C 1.38225 * 119.99981 * 140.00070 * 18 7 6 24 24 C 1.54631 * 110.59595 * 237.38135 * 2 1 3 25 25 C 1.54479 * 101.76643 * 266.06389 * 24 2 1 26 26 N 1.46769 * 105.47277 * 334.58638 * 25 24 2 27 27 C 1.34418 * 111.29831 * 17.01791 * 26 25 24 28 28 O 1.21289 * 124.93954 * 179.62764 * 27 26 25 29 29 H 1.08996 * 109.47033 * 60.69714 * 1 2 3 30 30 H 1.08997 * 109.47143 * 180.70090 * 1 2 3 31 31 H 1.09007 * 109.46702 * 300.70117 * 1 2 3 32 32 H 0.96998 * 119.99900 * 241.08410 * 3 2 1 33 33 H 0.97005 * 119.99644 * 359.97438 * 6 4 3 34 34 H 1.09004 * 109.47223 * 174.99697 * 9 7 6 35 35 H 1.09010 * 109.47071 * 55.00049 * 9 7 6 36 36 H 0.97000 * 119.99462 * 359.97438 * 13 12 10 37 37 H 1.08000 * 119.99951 * 359.97438 * 19 18 7 38 38 H 1.08000 * 120.00451 * 180.29723 * 20 19 18 39 39 H 1.07998 * 120.00380 * 179.76654 * 21 20 19 40 40 H 1.07995 * 119.99894 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.00372 * 0.02562 * 23 18 7 42 42 H 1.08999 * 110.96812 * 24.18686 * 24 2 1 43 43 H 1.09004 * 110.96474 * 147.94570 * 24 2 1 44 44 H 1.08991 * 110.24904 * 215.58511 * 25 24 2 45 45 H 1.08997 * 110.31650 * 93.62126 * 25 24 2 46 46 H 0.96997 * 124.34794 * 197.03160 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0415 1.3728 0.0000 4 6 1.7481 2.2013 1.0218 5 8 1.0585 1.8094 1.9433 6 7 2.2191 3.4641 1.0221 7 6 1.8997 4.3647 2.1324 8 1 1.8580 3.7959 3.0613 9 6 2.9804 5.4421 2.2422 10 6 4.2928 4.8012 2.6136 11 1 4.3502 3.7324 2.7573 12 6 5.4200 5.5795 2.7708 13 7 5.3500 6.8811 2.5963 14 14 7.0466 4.7851 3.2318 15 1 7.1740 4.7402 4.7107 16 1 7.0944 3.4037 2.6888 17 1 8.1645 5.5797 2.6626 18 6 0.5641 5.0166 1.8823 19 6 0.2295 5.4406 0.6098 20 6 -0.9977 6.0337 0.3794 21 6 -1.8858 6.2127 1.4235 22 6 -1.5489 5.7938 2.6970 23 6 -0.3239 5.1956 2.9263 24 6 2.0740 -0.7803 -1.2192 25 6 2.2820 -2.1903 -0.6235 26 7 2.4783 -1.9822 0.8160 27 6 2.0594 -0.7624 1.1946 28 8 2.1006 -0.3348 2.3289 29 1 -0.3633 0.5030 -0.8961 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 2.5914 1.6854 -0.7353 33 1 2.7696 3.7765 0.2870 34 1 2.6981 6.1631 3.0095 35 1 3.0834 5.9524 1.2845 36 1 4.5054 7.2935 2.3566 37 1 0.9253 5.3051 -0.2050 38 1 -1.2611 6.3607 -0.6157 39 1 -2.8431 6.6795 1.2442 40 1 -2.2429 5.9333 3.5126 41 1 -0.0606 4.8686 3.9214 42 1 1.3421 -0.8019 -2.0266 43 1 3.0187 -0.3585 -1.5623 44 1 3.1639 -2.6582 -1.0607 45 1 1.4016 -2.8087 -0.7985 46 1 2.8614 -2.6403 1.4169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893778759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:44 Heat of formation + Delta-G solvation = -37.938157 kcal Electronic energy + Delta-G solvation = -29201.144230 eV Core-core repulsion = 25283.501426 eV Total energy + Delta-G solvation = -3917.642804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93888 -39.40513 -38.33220 -36.42758 -35.40769 -34.16375 -32.88735 -31.56595 -30.51631 -30.04994 -28.79934 -28.25906 -25.41327 -24.40468 -22.31018 -22.22249 -22.03549 -21.35443 -19.80397 -19.33011 -18.01678 -17.31487 -16.76737 -16.42323 -16.21598 -16.05250 -15.01904 -14.99658 -14.40576 -14.18892 -14.01823 -13.77414 -13.74675 -13.55008 -13.35711 -13.06622 -12.98881 -12.69044 -12.49258 -12.39082 -12.23919 -11.98721 -11.98051 -11.61015 -11.27167 -11.16773 -10.73559 -10.66131 -10.56918 -10.14379 -9.99985 -9.98336 -9.33500 -9.15218 -8.75301 -8.66220 -8.51798 -8.34883 -8.20249 -8.14752 -6.36055 -4.05724 1.78565 1.80984 2.60112 3.12330 3.33817 3.45659 3.47575 3.64098 3.83273 4.09928 4.21120 4.29591 4.54583 4.56894 4.68066 4.79737 5.15876 5.17533 5.26733 5.28336 5.38046 5.39713 5.41140 5.54471 5.56970 5.58671 5.71676 5.91880 5.95069 6.16018 6.28648 6.36423 6.42196 6.56230 6.61180 6.84503 6.84729 6.86247 6.97839 7.00287 7.08259 7.22921 7.36759 7.41622 7.60905 8.16262 8.38482 8.49180 8.59163 8.88064 9.26238 9.65103 11.04109 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.005129 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.305179 B = 5457.664275 C = 8224.225690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.170 3.830 3 N -0.740 5.740 4 C 0.701 3.299 5 O -0.561 6.561 6 N -0.717 5.717 7 C 0.212 3.788 8 H 0.087 0.913 9 C 0.011 3.989 10 C -0.595 4.595 11 H 0.052 0.948 12 C 0.017 3.983 13 N -0.913 5.913 14 Si 1.069 2.931 15 H -0.288 1.288 16 H -0.290 1.290 17 H -0.285 1.285 18 C -0.071 4.071 19 C -0.107 4.107 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.107 4.107 24 C -0.138 4.138 25 C 0.107 3.893 26 N -0.743 5.743 27 C 0.504 3.496 28 O -0.476 6.476 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.396 0.604 33 H 0.393 0.607 34 H 0.024 0.976 35 H 0.014 0.986 36 H 0.269 0.731 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 -14.052 -12.374 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.078 3.922 3 N -0.398 5.398 4 C 0.401 3.599 5 O -0.436 6.436 6 N -0.370 5.370 7 C 0.106 3.894 8 H 0.105 0.895 9 C -0.027 4.027 10 C -0.633 4.633 11 H 0.071 0.929 12 C -0.187 4.187 13 N -0.549 5.549 14 Si 0.898 3.102 15 H -0.214 1.214 16 H -0.216 1.216 17 H -0.211 1.211 18 C -0.073 4.073 19 C -0.125 4.125 20 C -0.144 4.144 21 C -0.154 4.154 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.176 4.176 25 C -0.018 4.018 26 N -0.403 5.403 27 C 0.287 3.713 28 O -0.345 6.345 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.226 0.774 34 H 0.042 0.958 35 H 0.032 0.968 36 H 0.079 0.921 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -9.422 -13.725 -10.591 19.731 hybrid contribution -0.836 -0.400 -0.874 1.274 sum -10.258 -14.125 -11.465 20.885 Atomic orbital electron populations 1.22059 0.91778 1.02404 1.04675 1.20617 0.95689 0.82021 0.93871 1.44979 1.58459 1.10914 1.25485 1.15972 0.80817 0.80895 0.82263 1.90932 1.42140 1.75240 1.35324 1.45032 1.55364 1.10498 1.26104 1.19873 0.89952 0.90531 0.89005 0.89471 1.19507 0.93007 0.93102 0.97052 1.21998 0.94152 0.95572 1.51577 0.92922 1.25776 1.02881 0.95405 0.94591 1.70766 1.29550 1.10238 1.44387 0.83533 0.75265 0.74672 0.76730 1.21446 1.21619 1.21108 1.20642 0.96654 0.96609 0.93369 1.20879 0.96332 0.98573 0.96753 1.21026 0.94523 1.00291 0.98576 1.20986 0.99396 1.01668 0.93308 1.21044 0.96766 0.99454 0.96807 1.21034 0.93516 0.98917 0.99104 1.22970 1.03082 0.94549 0.96989 1.21949 1.02040 0.96912 0.80895 1.46227 1.66085 1.17688 1.10254 1.21111 0.77684 0.82121 0.90421 1.90890 1.52110 1.70372 1.21173 0.91514 0.91953 0.89278 0.76967 0.77360 0.95781 0.96803 0.92092 0.86743 0.86823 0.86869 0.86621 0.86216 0.88326 0.89183 0.90166 0.90999 0.75335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.47 37.16 0.31 -1.51 16 2 C 0.17 2.11 0.89 -131.83 -0.12 1.99 16 3 N -0.74 -10.58 5.15 -52.43 -0.27 -10.85 16 4 C 0.70 13.49 7.80 -86.92 -0.68 12.81 16 5 O -0.56 -12.95 11.87 -17.74 -0.21 -13.16 16 6 N -0.72 -13.82 4.05 -59.81 -0.24 -14.07 16 7 C 0.21 4.60 2.11 -69.08 -0.15 4.46 16 8 H 0.09 2.16 7.44 -51.93 -0.39 1.77 16 9 C 0.01 0.26 3.80 -27.89 -0.11 0.16 16 10 C -0.59 -16.60 8.84 -34.44 -0.30 -16.90 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 13 N -0.91 -27.51 13.65 55.43 0.76 -26.75 16 14 Si 1.07 25.74 29.90 -169.99 -5.08 20.65 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.07 -1.38 4.91 -104.62 -0.51 -1.90 16 19 C -0.11 -1.85 9.32 -39.58 -0.37 -2.22 16 20 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 21 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 22 C -0.12 -1.93 10.05 -39.58 -0.40 -2.32 16 23 C -0.11 -1.97 9.67 -39.59 -0.38 -2.35 16 24 C -0.14 -0.97 6.32 -25.10 -0.16 -1.13 16 25 C 0.11 0.68 7.78 -3.12 -0.02 0.65 16 26 N -0.74 -7.79 6.24 -59.20 -0.37 -8.16 16 27 C 0.50 7.88 7.27 -10.86 -0.08 7.80 16 28 O -0.48 -10.35 15.26 -17.48 -0.27 -10.62 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.48 6.31 -51.93 -0.33 1.15 16 32 H 0.40 4.43 8.37 -40.82 -0.34 4.09 16 33 H 0.39 6.88 8.62 -40.82 -0.35 6.53 16 34 H 0.02 0.64 8.01 -51.93 -0.42 0.23 16 35 H 0.01 0.35 8.01 -51.92 -0.42 -0.07 16 36 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 37 H 0.11 1.85 7.73 -52.49 -0.41 1.44 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.12 2.16 8.04 -52.49 -0.42 1.74 16 42 H 0.10 0.46 7.90 -51.93 -0.41 0.05 16 43 H 0.09 0.57 7.88 -51.93 -0.41 0.16 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.41 3.74 8.96 -40.82 -0.37 3.38 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -37.95 379.20 -10.53 -48.48 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -6.71 Total: 13.51 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -3.86 Total: -4.75 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.12 Total: -59.83 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.48 Total: -23.78 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.95 -10.53 -48.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893778759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.544 kcal (2) G-P(sol) polarization free energy of solvation -37.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds