Wall clock time and date at job start Tue Mar 31 2020 17:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 110.43480 * 2 1 4 4 C 1.34780 * 120.00121 * 61.09350 * 3 2 1 5 5 O 1.21586 * 119.99576 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00188 * 179.97438 * 4 3 2 7 7 C 1.46494 * 119.99994 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.47345 * 34.99720 * 7 6 4 9 9 C 1.52998 * 109.47146 * 154.99770 * 7 6 4 10 10 C 1.50696 * 109.47188 * 295.00356 * 9 7 6 11 11 H 1.07995 * 120.00332 * 359.97438 * 10 9 7 12 12 C 1.37880 * 119.99983 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00210 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46845 * 269.99914 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99403 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00010 * 14 12 10 18 18 C 1.50706 * 109.47349 * 274.99762 * 7 6 4 19 19 C 1.38240 * 119.99610 * 319.72948 * 18 7 6 20 20 C 1.38232 * 119.99630 * 179.74369 * 19 18 7 21 21 C 1.38240 * 119.99977 * 0.52379 * 20 19 18 22 22 C 1.38238 * 120.00062 * 359.75499 * 21 20 19 23 23 C 1.38225 * 119.99981 * 140.00070 * 18 7 6 24 24 C 1.54631 * 110.59595 * 237.38135 * 2 1 3 25 25 C 1.54479 * 101.76643 * 266.06389 * 24 2 1 26 26 N 1.46769 * 105.47277 * 334.58638 * 25 24 2 27 27 C 1.34418 * 111.29831 * 17.01791 * 26 25 24 28 28 O 1.21289 * 124.93954 * 179.62764 * 27 26 25 29 29 H 1.08996 * 109.47033 * 60.69714 * 1 2 3 30 30 H 1.08997 * 109.47143 * 180.70090 * 1 2 3 31 31 H 1.09007 * 109.46702 * 300.70117 * 1 2 3 32 32 H 0.96998 * 119.99900 * 241.08410 * 3 2 1 33 33 H 0.97005 * 119.99644 * 359.97438 * 6 4 3 34 34 H 1.09004 * 109.47223 * 174.99697 * 9 7 6 35 35 H 1.09010 * 109.47071 * 55.00049 * 9 7 6 36 36 H 0.97000 * 119.99462 * 359.97438 * 13 12 10 37 37 H 1.08000 * 119.99951 * 359.97438 * 19 18 7 38 38 H 1.08000 * 120.00451 * 180.29723 * 20 19 18 39 39 H 1.07998 * 120.00380 * 179.76654 * 21 20 19 40 40 H 1.07995 * 119.99894 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.00372 * 0.02562 * 23 18 7 42 42 H 1.08999 * 110.96812 * 24.18686 * 24 2 1 43 43 H 1.09004 * 110.96474 * 147.94570 * 24 2 1 44 44 H 1.08991 * 110.24904 * 215.58511 * 25 24 2 45 45 H 1.08997 * 110.31650 * 93.62126 * 25 24 2 46 46 H 0.96997 * 124.34794 * 197.03160 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0415 1.3728 0.0000 4 6 1.7481 2.2013 1.0218 5 8 1.0585 1.8094 1.9433 6 7 2.2191 3.4641 1.0221 7 6 1.8997 4.3647 2.1324 8 1 1.8580 3.7959 3.0613 9 6 2.9804 5.4421 2.2422 10 6 4.2928 4.8012 2.6136 11 1 4.3502 3.7324 2.7573 12 6 5.4200 5.5795 2.7708 13 7 5.3500 6.8811 2.5963 14 14 7.0466 4.7851 3.2318 15 1 7.1740 4.7402 4.7107 16 1 7.0944 3.4037 2.6888 17 1 8.1645 5.5797 2.6626 18 6 0.5641 5.0166 1.8823 19 6 0.2295 5.4406 0.6098 20 6 -0.9977 6.0337 0.3794 21 6 -1.8858 6.2127 1.4235 22 6 -1.5489 5.7938 2.6970 23 6 -0.3239 5.1956 2.9263 24 6 2.0740 -0.7803 -1.2192 25 6 2.2820 -2.1903 -0.6235 26 7 2.4783 -1.9822 0.8160 27 6 2.0594 -0.7624 1.1946 28 8 2.1006 -0.3348 2.3289 29 1 -0.3633 0.5030 -0.8961 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 2.5914 1.6854 -0.7353 33 1 2.7696 3.7765 0.2870 34 1 2.6981 6.1631 3.0095 35 1 3.0834 5.9524 1.2845 36 1 4.5054 7.2935 2.3566 37 1 0.9253 5.3051 -0.2050 38 1 -1.2611 6.3607 -0.6157 39 1 -2.8431 6.6795 1.2442 40 1 -2.2429 5.9333 3.5126 41 1 -0.0606 4.8686 3.9214 42 1 1.3421 -0.8019 -2.0266 43 1 3.0187 -0.3585 -1.5623 44 1 3.1639 -2.6582 -1.0607 45 1 1.4016 -2.8087 -0.7985 46 1 2.8614 -2.6403 1.4169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893778759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:43 Heat of formation + Delta-G solvation = -66.288025 kcal Electronic energy + Delta-G solvation = -29202.373573 eV Core-core repulsion = 25283.501426 eV Total energy + Delta-G solvation = -3918.872147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04586 -40.80047 -39.67230 -37.60687 -37.01015 -35.45997 -34.92560 -32.92910 -31.79232 -31.23134 -30.17657 -29.52294 -26.59212 -26.07969 -24.01933 -23.51417 -23.05671 -22.61129 -21.32784 -20.51823 -19.43954 -18.90734 -18.25745 -17.83097 -17.33932 -17.03258 -16.43660 -16.36394 -15.74297 -15.67270 -15.39098 -15.24325 -15.06568 -14.85878 -14.82663 -14.32777 -14.27036 -14.05911 -13.77716 -13.51180 -13.36032 -13.20249 -13.15692 -13.12460 -12.87383 -12.55880 -12.23133 -12.05478 -12.04481 -11.95674 -11.79182 -11.29307 -10.84905 -10.82033 -10.57958 -10.04445 -10.03123 -9.81846 -9.73663 -9.56050 -8.69214 -6.39159 0.45995 0.51064 1.41739 1.47756 1.55105 1.74593 1.92662 2.28545 2.49964 2.51552 2.90266 3.13177 3.28329 3.37144 3.59179 3.92730 3.94336 3.97748 4.04807 4.15964 4.27260 4.31991 4.42794 4.54973 4.64841 4.69084 4.69612 4.71217 4.78775 4.99152 5.00390 5.05210 5.10657 5.13300 5.22912 5.27441 5.53340 5.56791 5.58497 5.59967 5.83859 5.92462 5.94946 6.03608 6.11258 6.13361 6.17275 6.56314 7.20683 7.32781 7.38696 7.79854 8.71388 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.005129 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.305179 B = 5457.664275 C = 8224.225690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.159 3.841 3 N -0.724 5.724 4 C 0.695 3.305 5 O -0.602 6.602 6 N -0.715 5.715 7 C 0.229 3.771 8 H 0.041 0.959 9 C 0.024 3.976 10 C -0.602 4.602 11 H 0.035 0.965 12 C -0.028 4.028 13 N -0.932 5.932 14 Si 1.114 2.886 15 H -0.280 1.280 16 H -0.278 1.278 17 H -0.274 1.274 18 C -0.098 4.098 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.136 4.136 24 C -0.123 4.123 25 C 0.101 3.899 26 N -0.730 5.730 27 C 0.486 3.514 28 O -0.558 6.558 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.412 0.588 33 H 0.401 0.599 34 H -0.002 1.002 35 H 0.013 0.987 36 H 0.258 0.742 37 H 0.121 0.879 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.103 0.897 42 H 0.136 0.864 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.159 -15.333 -16.088 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.068 3.932 3 N -0.383 5.383 4 C 0.395 3.605 5 O -0.480 6.480 6 N -0.369 5.369 7 C 0.123 3.877 8 H 0.059 0.941 9 C -0.014 4.014 10 C -0.640 4.640 11 H 0.053 0.947 12 C -0.226 4.226 13 N -0.569 5.569 14 Si 0.936 3.064 15 H -0.206 1.206 16 H -0.204 1.204 17 H -0.199 1.199 18 C -0.099 4.099 19 C -0.135 4.135 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.155 4.155 24 C -0.161 4.161 25 C -0.022 4.022 26 N -0.387 5.387 27 C 0.270 3.730 28 O -0.433 6.433 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.250 0.750 33 H 0.236 0.764 34 H 0.016 0.984 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.139 0.861 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.160 0.840 41 H 0.121 0.879 42 H 0.154 0.846 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.118 0.882 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.227 -15.068 -14.410 23.223 hybrid contribution -0.674 -0.079 0.262 0.727 sum -10.901 -15.148 -14.148 23.419 Atomic orbital electron populations 1.21992 0.91609 1.03477 1.03185 1.21004 0.95999 0.80850 0.95334 1.44855 1.57891 1.11206 1.24349 1.16195 0.80475 0.80942 0.82859 1.90916 1.43913 1.75887 1.37287 1.44841 1.55781 1.10708 1.25531 1.19287 0.90842 0.89380 0.88241 0.94062 1.19282 0.93016 0.93312 0.95766 1.22189 0.95681 0.94756 1.51340 0.94690 1.27137 1.06323 0.95255 0.93921 1.70884 1.29033 1.10996 1.45985 0.82956 0.71923 0.74517 0.76989 1.20618 1.20364 1.19877 1.20453 0.95774 0.98596 0.95097 1.21032 0.97816 0.98978 0.95707 1.21456 0.93209 0.98659 1.00550 1.21484 1.00696 1.00039 0.92244 1.21369 0.95729 0.98330 0.98660 1.21139 0.95281 1.00703 0.98399 1.23104 1.04423 0.93349 0.95222 1.22397 1.04889 0.97090 0.77791 1.46314 1.63810 1.16021 1.12549 1.21840 0.77255 0.83705 0.90231 1.90847 1.55698 1.72489 1.24315 0.89143 0.89505 0.94529 0.75013 0.76420 0.98368 0.96916 0.93242 0.86052 0.83147 0.82798 0.83970 0.87878 0.84628 0.87934 0.86966 0.88218 0.74825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.47 71.98 0.61 -2.75 16 2 C 0.16 3.76 0.89 3.60 0.00 3.77 16 3 N -0.72 -20.64 5.15 -438.04 -2.25 -22.90 16 4 C 0.70 28.29 7.80 179.05 1.40 29.68 16 5 O -0.60 -30.14 11.87 18.03 0.21 -29.93 16 6 N -0.71 -29.24 4.05 -461.41 -1.87 -31.10 16 7 C 0.23 10.80 2.11 44.25 0.09 10.90 16 8 H 0.04 2.29 7.44 -2.39 -0.02 2.27 16 9 C 0.02 1.26 3.80 29.85 0.11 1.37 16 10 C -0.60 -35.25 8.84 25.60 0.23 -35.03 16 11 H 0.03 2.14 7.74 -2.91 -0.02 2.12 16 12 C -0.03 -1.64 5.46 84.65 0.46 -1.17 16 13 N -0.93 -57.51 13.65 21.45 0.29 -57.21 16 14 Si 1.11 52.50 29.90 68.60 2.05 54.55 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 C -0.10 -4.02 4.91 -19.87 -0.10 -4.12 16 19 C -0.12 -4.03 9.32 22.27 0.21 -3.82 16 20 C -0.12 -3.36 10.05 22.27 0.22 -3.13 16 21 C -0.13 -3.35 10.05 22.27 0.22 -3.12 16 22 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 23 C -0.14 -5.34 9.67 22.27 0.22 -5.12 16 24 C -0.12 -1.20 6.32 31.65 0.20 -1.00 16 25 C 0.10 0.83 7.78 86.83 0.68 1.51 16 26 N -0.73 -14.22 6.24 -459.81 -2.87 -17.09 16 27 C 0.49 15.45 7.27 87.90 0.64 16.09 16 28 O -0.56 -26.09 15.26 18.96 0.29 -25.80 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.04 1.26 6.31 -2.38 -0.02 1.25 16 32 H 0.41 8.69 8.37 -92.71 -0.78 7.91 16 33 H 0.40 14.62 8.62 -92.70 -0.80 13.82 16 34 H 0.00 -0.11 8.01 -2.38 -0.02 -0.13 16 35 H 0.01 0.67 8.01 -2.38 -0.02 0.65 16 36 H 0.26 16.05 7.22 -92.71 -0.67 15.38 16 37 H 0.12 3.88 7.73 -2.91 -0.02 3.86 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.10 4.19 8.04 -2.91 -0.02 4.17 16 42 H 0.14 0.42 7.90 -2.39 -0.02 0.40 16 43 H 0.10 0.81 7.88 -2.38 -0.02 0.79 16 44 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.41 7.19 8.96 -92.71 -0.83 6.36 16 Total: -1.00 -92.53 379.20 -0.01 -92.53 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -1.28 Total: 36.46 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 5.42 Total: 0.48 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -6.70 Total: -128.30 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: 0.50 Total: -55.73 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 2.05 Total: 54.55 kcal Total: -92.53 -0.01 -92.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893778759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.243 kcal (2) G-P(sol) polarization free energy of solvation -92.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds