Wall clock time and date at job start Tue Mar 31 2020 17:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 110.43532 * 2 1 4 4 C 1.34775 * 119.99839 * 61.08705 * 3 2 1 5 5 O 1.21587 * 120.00275 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00044 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00075 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47092 * 324.99806 * 7 6 4 9 9 C 1.53000 * 109.47023 * 204.99547 * 7 6 4 10 10 C 1.50703 * 109.46801 * 65.00116 * 9 7 6 11 11 H 1.07998 * 120.00413 * 0.02562 * 10 9 7 12 12 C 1.37878 * 119.99680 * 179.97438 * 10 9 7 13 13 N 1.31512 * 120.00285 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99651 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47312 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47105 * 120.00272 * 14 12 10 17 17 H 1.48501 * 109.47040 * 239.99861 * 14 12 10 18 18 C 1.50703 * 109.47155 * 84.99845 * 7 6 4 19 19 C 1.38233 * 119.99662 * 39.72459 * 18 7 6 20 20 C 1.38240 * 119.99763 * 179.76498 * 19 18 7 21 21 C 1.38238 * 119.99745 * 0.48587 * 20 19 18 22 22 C 1.38230 * 120.00026 * 359.79205 * 21 20 19 23 23 C 1.38231 * 120.00201 * 359.95424 * 22 21 20 24 24 C 1.54626 * 110.59964 * 237.37874 * 2 1 3 25 25 C 1.54479 * 101.76751 * 266.06453 * 24 2 1 26 26 N 1.46758 * 105.47359 * 334.58656 * 25 24 2 27 27 C 1.34420 * 111.30350 * 17.01189 * 26 25 24 28 28 O 1.21273 * 124.94550 * 179.62531 * 27 26 25 29 29 H 1.09005 * 109.47244 * 60.70103 * 1 2 3 30 30 H 1.09004 * 109.47208 * 180.69857 * 1 2 3 31 31 H 1.08997 * 109.47665 * 300.69848 * 1 2 3 32 32 H 0.96997 * 119.99856 * 241.08756 * 3 2 1 33 33 H 0.96997 * 119.99651 * 359.97438 * 6 4 3 34 34 H 1.09002 * 109.47069 * 184.99840 * 9 7 6 35 35 H 1.08991 * 109.47625 * 305.00159 * 9 7 6 36 36 H 0.96998 * 119.99928 * 179.97438 * 13 12 10 37 37 H 1.08003 * 120.00479 * 0.02562 * 19 18 7 38 38 H 1.07996 * 120.00487 * 180.25275 * 20 19 18 39 39 H 1.08003 * 119.99894 * 179.76310 * 21 20 19 40 40 H 1.08003 * 120.00063 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.00511 * 180.02562 * 23 22 21 42 42 H 1.09005 * 110.96797 * 24.18701 * 24 2 1 43 43 H 1.09002 * 110.96986 * 147.94265 * 24 2 1 44 44 H 1.08996 * 110.24615 * 215.58094 * 25 24 2 45 45 H 1.09002 * 110.31413 * 93.62577 * 25 24 2 46 46 H 0.96998 * 124.35259 * 197.03333 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0415 1.3728 0.0000 4 6 1.7479 2.2013 1.0217 5 8 1.0582 1.8095 1.9432 6 7 2.2181 3.4644 1.0215 7 6 1.8985 4.3651 2.1318 8 1 0.8906 4.1563 2.4906 9 6 1.9785 5.8154 1.6512 10 6 0.9097 6.0618 0.6177 11 1 0.2401 5.2639 0.3326 12 6 0.7861 7.3062 0.0370 13 7 1.6005 8.2782 0.3853 14 14 -0.5392 7.6117 -1.2435 15 1 -1.3193 6.3660 -1.4556 16 1 -1.4459 8.6884 -0.7704 17 1 0.0935 8.0238 -2.5222 18 6 2.8845 4.1518 3.2514 19 6 4.2204 3.9414 2.9651 20 6 5.1257 3.7507 3.9922 21 6 4.6934 3.7603 5.3052 22 6 3.3566 3.9650 5.5912 23 6 2.4522 4.1610 4.5644 24 6 2.0740 -0.7803 -1.2191 25 6 2.2820 -2.1903 -0.6233 26 7 2.4783 -1.9822 0.8161 27 6 2.0594 -0.7623 1.1947 28 8 2.1005 -0.3348 2.3288 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0125 31 1 -0.3634 0.5246 0.8836 32 1 2.5914 1.6854 -0.7353 33 1 2.7680 3.7770 0.2862 34 1 1.8283 6.4871 2.4964 35 1 2.9586 5.9989 1.2111 36 1 1.5137 9.1536 -0.0236 37 1 4.5576 3.9303 1.9391 38 1 6.1701 3.5903 3.7688 39 1 5.4000 3.6074 6.1076 40 1 3.0187 3.9721 6.6170 41 1 1.4077 4.3213 4.7878 42 1 1.3421 -0.8020 -2.0266 43 1 3.0187 -0.3585 -1.5622 44 1 3.1640 -2.6582 -1.0606 45 1 1.4017 -2.8088 -0.7985 46 1 2.8613 -2.6402 1.4170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893778769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:48 Heat of formation + Delta-G solvation = -34.419009 kcal Electronic energy + Delta-G solvation = -29217.034220 eV Core-core repulsion = 25299.544017 eV Total energy + Delta-G solvation = -3917.490203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92657 -39.30717 -38.23944 -36.43441 -35.27377 -34.10486 -32.68253 -31.51911 -30.38248 -29.97041 -28.82264 -28.45347 -25.44058 -24.68425 -22.21355 -22.16802 -21.87210 -21.26787 -19.63849 -19.29093 -17.94311 -17.23867 -16.69571 -16.22566 -16.09481 -15.91252 -15.09164 -14.72170 -14.52323 -14.31207 -14.13185 -13.98593 -13.70011 -13.45716 -13.23152 -12.89087 -12.73289 -12.62306 -12.40285 -12.36591 -12.16599 -12.01631 -11.92165 -11.43632 -11.24018 -11.05605 -10.83583 -10.64670 -10.52316 -10.35025 -9.95917 -9.68934 -9.30537 -9.20290 -9.16869 -8.63431 -8.44078 -8.35853 -8.16744 -8.02167 -6.04441 -4.06987 1.93700 1.96166 2.60763 3.12559 3.28000 3.34803 3.36740 3.41103 3.88286 4.12790 4.29705 4.35549 4.43978 4.59008 4.69948 4.86119 5.16872 5.18548 5.32380 5.39420 5.41246 5.43432 5.51134 5.58834 5.62391 5.69158 5.79844 6.05643 6.08727 6.28133 6.36379 6.50394 6.56266 6.61213 6.71645 6.85476 6.95401 6.98577 7.00021 7.12155 7.24962 7.39455 7.56240 7.59535 7.78666 7.93417 8.32642 8.36671 8.65983 8.99457 9.31955 9.57444 11.06270 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008763 B = 0.004787 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.313159 B = 5847.435559 C = 8363.314002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.170 3.830 3 N -0.740 5.740 4 C 0.700 3.300 5 O -0.562 6.562 6 N -0.718 5.718 7 C 0.205 3.795 8 H 0.085 0.915 9 C 0.023 3.977 10 C -0.515 4.515 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.068 4.068 19 C -0.105 4.105 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.106 4.106 24 C -0.138 4.138 25 C 0.107 3.893 26 N -0.743 5.743 27 C 0.505 3.495 28 O -0.477 6.477 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.396 0.604 33 H 0.393 0.607 34 H 0.034 0.966 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -19.141 -3.470 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.078 3.922 3 N -0.399 5.399 4 C 0.400 3.600 5 O -0.437 6.437 6 N -0.371 5.371 7 C 0.100 3.900 8 H 0.103 0.897 9 C -0.014 4.014 10 C -0.553 4.553 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.069 4.069 19 C -0.123 4.123 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.141 4.141 23 C -0.125 4.125 24 C -0.176 4.176 25 C -0.018 4.018 26 N -0.403 5.403 27 C 0.288 3.712 28 O -0.346 6.346 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.227 0.773 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.341 -18.936 -2.054 19.535 hybrid contribution 0.120 0.218 -1.302 1.326 sum 4.460 -18.719 -3.356 19.533 Atomic orbital electron populations 1.22079 0.91712 1.02351 1.04976 1.20610 0.95807 0.82047 0.93695 1.44988 1.58564 1.10885 1.25460 1.15992 0.80841 0.80988 0.82202 1.90932 1.41913 1.75225 1.35636 1.45094 1.56099 1.10206 1.25681 1.20062 0.95685 0.91669 0.82573 0.89672 1.19402 0.97905 0.87152 0.96979 1.21188 1.15767 0.96385 1.21948 0.92304 1.24991 0.96040 0.96198 0.97014 1.69974 1.37629 1.02547 1.43075 0.86554 0.81947 0.78242 0.81359 1.19779 1.21053 1.21139 1.20589 0.94960 0.96059 0.95289 1.20846 0.92959 0.99845 0.98687 1.21000 0.98924 1.01433 0.93106 1.20950 0.95782 1.02429 0.96271 1.21009 0.93527 1.00914 0.98659 1.20993 0.99564 0.99592 0.92309 1.22969 1.03077 0.94435 0.97112 1.21953 1.02017 0.97003 0.80834 1.46235 1.66101 1.17682 1.10273 1.21131 0.77576 0.82100 0.90436 1.90879 1.52157 1.70462 1.21145 0.91289 0.92037 0.89173 0.76976 0.77308 0.94761 0.95826 0.93017 0.86859 0.87006 0.87030 0.86760 0.86287 0.88251 0.89267 0.90237 0.90983 0.75442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.47 37.16 0.31 -1.63 16 2 C 0.17 2.10 0.89 -131.83 -0.12 1.98 16 3 N -0.74 -10.48 5.15 -52.43 -0.27 -10.75 16 4 C 0.70 13.33 7.80 -86.92 -0.68 12.65 16 5 O -0.56 -12.86 11.87 -17.74 -0.21 -13.07 16 6 N -0.72 -13.66 4.02 -59.81 -0.24 -13.90 16 7 C 0.21 4.42 2.12 -69.08 -0.15 4.27 16 8 H 0.09 2.02 7.44 -51.93 -0.39 1.64 16 9 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 10 C -0.51 -13.77 8.84 -34.44 -0.30 -14.07 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 14 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.07 -1.37 4.91 -104.62 -0.51 -1.89 16 19 C -0.11 -1.95 9.33 -39.58 -0.37 -2.32 16 20 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 21 C -0.14 -2.19 10.05 -39.58 -0.40 -2.59 16 22 C -0.12 -2.09 10.05 -39.59 -0.40 -2.48 16 23 C -0.11 -2.05 9.67 -39.59 -0.38 -2.43 16 24 C -0.14 -0.96 6.32 -25.10 -0.16 -1.12 16 25 C 0.11 0.64 7.78 -3.13 -0.02 0.62 16 26 N -0.74 -7.29 6.24 -59.21 -0.37 -7.66 16 27 C 0.51 7.52 7.27 -10.86 -0.08 7.44 16 28 O -0.48 -9.86 15.26 -17.46 -0.27 -10.13 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.54 6.31 -51.93 -0.33 1.22 16 32 H 0.40 4.36 8.37 -40.82 -0.34 4.02 16 33 H 0.39 6.77 8.62 -40.82 -0.35 6.41 16 34 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.11 1.97 7.71 -52.48 -0.40 1.56 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.12 2.21 8.04 -52.48 -0.42 1.79 16 42 H 0.10 0.50 7.91 -51.93 -0.41 0.09 16 43 H 0.09 0.53 7.88 -51.93 -0.41 0.12 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.41 3.42 8.96 -40.82 -0.37 3.05 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -36.68 380.48 -10.55 -47.23 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.77 Total: 13.65 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.88 Total: -2.10 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.14 Total: -57.39 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.48 Total: -23.21 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.68 -10.55 -47.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893778769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.809 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds