Wall clock time and date at job start Tue Mar 31 2020 17:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 110.43532 * 2 1 4 4 C 1.34775 * 119.99839 * 61.08705 * 3 2 1 5 5 O 1.21587 * 120.00275 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00044 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00075 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47092 * 324.99806 * 7 6 4 9 9 C 1.53000 * 109.47023 * 204.99547 * 7 6 4 10 10 C 1.50703 * 109.46801 * 65.00116 * 9 7 6 11 11 H 1.07998 * 120.00413 * 0.02562 * 10 9 7 12 12 C 1.37878 * 119.99680 * 179.97438 * 10 9 7 13 13 N 1.31512 * 120.00285 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99651 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47312 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47105 * 120.00272 * 14 12 10 17 17 H 1.48501 * 109.47040 * 239.99861 * 14 12 10 18 18 C 1.50703 * 109.47155 * 84.99845 * 7 6 4 19 19 C 1.38233 * 119.99662 * 39.72459 * 18 7 6 20 20 C 1.38240 * 119.99763 * 179.76498 * 19 18 7 21 21 C 1.38238 * 119.99745 * 0.48587 * 20 19 18 22 22 C 1.38230 * 120.00026 * 359.79205 * 21 20 19 23 23 C 1.38231 * 120.00201 * 359.95424 * 22 21 20 24 24 C 1.54626 * 110.59964 * 237.37874 * 2 1 3 25 25 C 1.54479 * 101.76751 * 266.06453 * 24 2 1 26 26 N 1.46758 * 105.47359 * 334.58656 * 25 24 2 27 27 C 1.34420 * 111.30350 * 17.01189 * 26 25 24 28 28 O 1.21273 * 124.94550 * 179.62531 * 27 26 25 29 29 H 1.09005 * 109.47244 * 60.70103 * 1 2 3 30 30 H 1.09004 * 109.47208 * 180.69857 * 1 2 3 31 31 H 1.08997 * 109.47665 * 300.69848 * 1 2 3 32 32 H 0.96997 * 119.99856 * 241.08756 * 3 2 1 33 33 H 0.96997 * 119.99651 * 359.97438 * 6 4 3 34 34 H 1.09002 * 109.47069 * 184.99840 * 9 7 6 35 35 H 1.08991 * 109.47625 * 305.00159 * 9 7 6 36 36 H 0.96998 * 119.99928 * 179.97438 * 13 12 10 37 37 H 1.08003 * 120.00479 * 0.02562 * 19 18 7 38 38 H 1.07996 * 120.00487 * 180.25275 * 20 19 18 39 39 H 1.08003 * 119.99894 * 179.76310 * 21 20 19 40 40 H 1.08003 * 120.00063 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.00511 * 180.02562 * 23 22 21 42 42 H 1.09005 * 110.96797 * 24.18701 * 24 2 1 43 43 H 1.09002 * 110.96986 * 147.94265 * 24 2 1 44 44 H 1.08996 * 110.24615 * 215.58094 * 25 24 2 45 45 H 1.09002 * 110.31413 * 93.62577 * 25 24 2 46 46 H 0.96998 * 124.35259 * 197.03333 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0415 1.3728 0.0000 4 6 1.7479 2.2013 1.0217 5 8 1.0582 1.8095 1.9432 6 7 2.2181 3.4644 1.0215 7 6 1.8985 4.3651 2.1318 8 1 0.8906 4.1563 2.4906 9 6 1.9785 5.8154 1.6512 10 6 0.9097 6.0618 0.6177 11 1 0.2401 5.2639 0.3326 12 6 0.7861 7.3062 0.0370 13 7 1.6005 8.2782 0.3853 14 14 -0.5392 7.6117 -1.2435 15 1 -1.3193 6.3660 -1.4556 16 1 -1.4459 8.6884 -0.7704 17 1 0.0935 8.0238 -2.5222 18 6 2.8845 4.1518 3.2514 19 6 4.2204 3.9414 2.9651 20 6 5.1257 3.7507 3.9922 21 6 4.6934 3.7603 5.3052 22 6 3.3566 3.9650 5.5912 23 6 2.4522 4.1610 4.5644 24 6 2.0740 -0.7803 -1.2191 25 6 2.2820 -2.1903 -0.6233 26 7 2.4783 -1.9822 0.8161 27 6 2.0594 -0.7623 1.1947 28 8 2.1005 -0.3348 2.3288 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0125 31 1 -0.3634 0.5246 0.8836 32 1 2.5914 1.6854 -0.7353 33 1 2.7680 3.7770 0.2862 34 1 1.8283 6.4871 2.4964 35 1 2.9586 5.9989 1.2111 36 1 1.5137 9.1536 -0.0236 37 1 4.5576 3.9303 1.9391 38 1 6.1701 3.5903 3.7688 39 1 5.4000 3.6074 6.1076 40 1 3.0187 3.9721 6.6170 41 1 1.4077 4.3213 4.7878 42 1 1.3421 -0.8020 -2.0266 43 1 3.0187 -0.3585 -1.5622 44 1 3.1640 -2.6582 -1.0606 45 1 1.4017 -2.8088 -0.7985 46 1 2.8613 -2.6402 1.4170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893778769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:47 Heat of formation + Delta-G solvation = -61.216004 kcal Electronic energy + Delta-G solvation = -29218.196225 eV Core-core repulsion = 25299.544017 eV Total energy + Delta-G solvation = -3918.652208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99728 -40.72184 -39.61239 -37.55016 -36.82421 -35.38693 -34.68582 -32.90116 -31.74566 -31.18638 -30.41520 -29.50672 -26.79245 -26.11176 -23.78977 -23.44526 -23.02235 -22.53727 -21.20788 -20.44580 -19.26825 -18.63624 -18.21391 -17.69631 -17.18117 -16.99508 -16.58555 -16.42339 -16.11866 -15.59448 -15.33062 -15.15929 -14.85638 -14.79619 -14.49416 -14.31455 -14.19799 -14.03038 -13.65707 -13.49747 -13.41307 -13.15506 -13.11878 -12.91379 -12.83373 -12.59749 -12.45290 -12.12584 -12.02542 -11.87683 -11.56772 -11.28207 -11.22948 -10.77515 -10.56387 -9.99502 -9.99287 -9.76720 -9.66404 -9.49267 -8.18026 -6.28043 0.52251 0.56037 1.39334 1.42140 1.47736 1.54068 1.98343 2.32296 2.41853 2.56591 2.96117 3.15120 3.32424 3.43660 3.63023 3.95386 4.02561 4.03486 4.07026 4.19266 4.29770 4.42400 4.48530 4.65687 4.66186 4.70936 4.75828 4.80004 4.81296 5.02120 5.07524 5.13212 5.19270 5.27792 5.35064 5.45328 5.57997 5.60367 5.61929 5.66996 5.79953 5.92295 5.97605 6.07920 6.17111 6.18328 6.23696 6.84220 7.27665 7.37211 7.41015 7.86831 8.93139 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008763 B = 0.004787 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.313159 B = 5847.435559 C = 8363.314002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 N -0.725 5.725 4 C 0.695 3.305 5 O -0.603 6.603 6 N -0.715 5.715 7 C 0.223 3.777 8 H 0.051 0.949 9 C 0.039 3.961 10 C -0.524 4.524 11 H 0.052 0.948 12 C 0.010 3.990 13 N -0.927 5.927 14 Si 0.960 3.040 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.095 4.095 19 C -0.120 4.120 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.124 4.124 25 C 0.103 3.897 26 N -0.729 5.729 27 C 0.491 3.509 28 O -0.552 6.552 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.412 0.588 33 H 0.402 0.598 34 H 0.002 0.998 35 H 0.012 0.988 36 H 0.264 0.736 37 H 0.119 0.881 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 -21.366 -5.741 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 N -0.384 5.384 4 C 0.395 3.605 5 O -0.481 6.481 6 N -0.369 5.369 7 C 0.117 3.883 8 H 0.069 0.931 9 C 0.002 3.998 10 C -0.562 4.562 11 H 0.071 0.929 12 C -0.189 4.189 13 N -0.568 5.568 14 Si 0.785 3.215 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.096 4.096 19 C -0.138 4.138 20 C -0.145 4.145 21 C -0.150 4.150 22 C -0.143 4.143 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.020 4.020 26 N -0.386 5.386 27 C 0.275 3.725 28 O -0.427 6.427 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.250 0.750 33 H 0.237 0.763 34 H 0.020 0.980 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.124 0.876 44 H 0.132 0.868 45 H 0.114 0.886 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 5.731 -21.232 -4.421 22.432 hybrid contribution -0.277 0.812 -0.559 1.024 sum 5.454 -20.420 -4.980 21.714 Atomic orbital electron populations 1.22021 0.92270 1.03376 1.03057 1.20970 0.95606 0.81051 0.95639 1.44855 1.57991 1.11205 1.24338 1.16198 0.80420 0.81060 0.82803 1.90916 1.43642 1.75913 1.37593 1.44882 1.56354 1.10274 1.25357 1.19491 0.94725 0.90216 0.83877 0.93118 1.19127 0.96704 0.88719 0.95250 1.21387 1.16047 0.96461 1.22336 0.92932 1.25797 0.98169 0.95850 0.99037 1.70088 1.39284 1.03029 1.44349 0.85480 0.79048 0.78006 0.78950 1.19337 1.20960 1.19849 1.20543 0.95644 0.98337 0.95100 1.21026 0.92563 1.00330 0.99891 1.21428 1.00194 0.99964 0.92876 1.21443 0.95906 1.00408 0.97216 1.21369 0.93831 0.99817 0.99315 1.21165 0.99993 1.01176 0.93037 1.23090 1.04387 0.93525 0.95210 1.22364 1.04810 0.96895 0.77981 1.46269 1.63904 1.16017 1.12387 1.21661 0.77215 0.83608 0.90056 1.90838 1.55470 1.72435 1.23955 0.89780 0.89475 0.94432 0.75020 0.76337 0.97979 0.96932 0.92752 0.86276 0.83642 0.83099 0.83974 0.87248 0.85271 0.87629 0.86785 0.88594 0.74715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 8.47 71.98 0.61 -3.11 16 2 C 0.16 3.72 0.89 3.60 0.00 3.73 16 3 N -0.72 -20.40 5.15 -438.05 -2.25 -22.65 16 4 C 0.70 27.83 7.80 179.06 1.40 29.23 16 5 O -0.60 -29.71 11.87 18.03 0.21 -29.50 16 6 N -0.71 -28.74 4.02 -461.41 -1.86 -30.59 16 7 C 0.22 10.38 2.12 44.25 0.09 10.47 16 8 H 0.05 2.67 7.44 -2.39 -0.02 2.65 16 9 C 0.04 2.08 4.50 29.85 0.13 2.21 16 10 C -0.52 -29.19 8.84 25.60 0.23 -28.96 16 11 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 12 C 0.01 0.55 5.46 84.66 0.46 1.01 16 13 N -0.93 -54.85 13.29 21.45 0.28 -54.57 16 14 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 C -0.09 -4.09 4.91 -19.87 -0.10 -4.19 16 19 C -0.12 -4.55 9.33 22.27 0.21 -4.34 16 20 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 21 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 22 C -0.13 -4.24 10.05 22.27 0.22 -4.01 16 23 C -0.14 -5.55 9.67 22.27 0.22 -5.34 16 24 C -0.12 -1.20 6.32 31.65 0.20 -1.00 16 25 C 0.10 0.76 7.78 86.83 0.68 1.44 16 26 N -0.73 -12.77 6.24 -459.82 -2.87 -15.64 16 27 C 0.49 14.59 7.27 87.90 0.64 15.23 16 28 O -0.55 -24.05 15.26 19.01 0.29 -23.76 16 29 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.04 1.35 6.31 -2.39 -0.02 1.34 16 32 H 0.41 8.54 8.37 -92.71 -0.78 7.77 16 33 H 0.40 14.37 8.62 -92.71 -0.80 13.57 16 34 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.12 4.22 7.71 -2.91 -0.02 4.20 16 38 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 41 H 0.11 4.50 8.04 -2.91 -0.02 4.48 16 42 H 0.13 0.58 7.91 -2.38 -0.02 0.56 16 43 H 0.11 0.74 7.88 -2.39 -0.02 0.73 16 44 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.41 6.24 8.96 -92.71 -0.83 5.41 16 Total: -1.00 -87.67 380.48 -0.11 -87.78 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -1.38 Total: 38.33 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.44 Total: 4.77 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -6.70 Total: -123.46 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: 0.50 Total: -53.26 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -87.67 -0.11 -87.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893778769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.568 kcal (2) G-P(sol) polarization free energy of solvation -87.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds